Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016164.1

Orthogroup ID

OG0000466

Physical Location & Seq

Genomic Coordinates Reverse (-)

47658 .. 48305

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016164.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggtgcaatggttcggtgtcatagcctgtcttaagtggatatggaagaattggttcattattgtggtgattgtgacatggaacgtaatagccagtcttgggtggatatggaagagtaggttcagttacatggttgaaaccccacagtcaatatcagaggataatcaagaaccggttgacgtcgatgcctttgcatctcttccttcatcatcagctgaatcatcagctcctaggtggaagcatgatgtatttttgagtttccggggtgtagacactcgcagaggtattacgttcgaaatatacgatcgactgcaaaacaggagaggaatcaaaacattcatggatgaccaagaccttcaagtaggggatgttatttctcccactctcctaatggcaattaaagaatcaaggtttgcaattattgctctctctccaaactatgcctcttccacttggtgtttggaggaacttagaaacatttgtgaatgcatgaaagaagacaacaatagaattctgccacttttttataatgtggatcctagtgatgtacgaaatcagaagaggagttttggagatgctttcactaagcatgaaaaatctgggaaacacaaatcagaaaaggtgcagcactgtggagagatgctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

215

Amino Acids

24.92

Weight (kDa)

6.43

Isoelectric Point (pI)

61.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica	MD12G1125500.v1.1
prunus_persica	Prupe.2G112700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata	RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora	Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa	Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha	Rh1DG060500 Rh6BG033900
rosa_wichuraiana	Rw0G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AatII	GACGTC	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	270
AclWI	GGATC	2 cut(s)	530, 543
AcsI	RAATTY	1 cut(s)	510
AcyI	GRCGYC	1 cut(s)	180
AdeI	CACNNNGTG	1 cut(s)	456
AfaI	GTAC	1 cut(s)	549
AfiI	CCNNNNNNNGG	1 cut(s)	99
AflII	CTTAAG	1 cut(s)	32
AgeI	ACCGGT	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	137, 359
AluBI	AGCT	2 cut(s)	215, 227
AluI	AGCT	2 cut(s)	215, 227
AlwI	GGATC	2 cut(s)	530, 543
ApeKI	GCWGC	1 cut(s)	625
ApoI	RAATTY	1 cut(s)	510
AsiGI	ACCGGT	1 cut(s)	172
Asp700I	GAANNNNTTC	1 cut(s)	53
AspA2I	CCTAGG	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	79
AsuII	TTCGAA	1 cut(s)	294
AvrII	CCTAGG	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	637
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BcnI	CCSGG	1 cut(s)	263
BfaI	CTAG	2 cut(s)	231, 540
BfrI	CTTAAG	1 cut(s)	32
BisI	GCNGC	1 cut(s)	626
BlnI	CCTAGG	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	627
Bme1390I	CCNGG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	4 cut(s)	175, 203, 565, 630
BpiI	GAAGAC	1 cut(s)	504
Bpu14I	TTCGAA	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	230, 262
BsaWI	WCCGGW	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	230, 262
BseGI	GGATG	2 cut(s)	349, 373
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	577
BseXI	GCAGC	1 cut(s)	637
BsgI	GTGCAG	1 cut(s)	644
Bsh1285I	CGRYCG	1 cut(s)	307
BshTI	ACCGGT	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	173, 262
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	491
Bsp119I	TTCGAA	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	304, 535
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	2 cut(s)	530, 543
BspT104I	TTCGAA	1 cut(s)	294
BspTI	CTTAAG	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	230, 262
BssMI	GATC	2 cut(s)	304, 535
BssNI	GRCGYC	1 cut(s)	180
BssT1I	CCWWGG	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	147, 632
Bst6I	CTCTTC	4 cut(s)	107, 204, 451, 554
BstACI	GRCGYC	1 cut(s)	180
BstAFI	CTTAAG	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstBI	TTCGAA	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	470, 585
BstF5I	GGATG	2 cut(s)	349, 373
BstKTI	GATC	2 cut(s)	307, 538
BstMBI	GATC	2 cut(s)	304, 535
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	637
BstV2I	GAAGAC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	349, 373
BtsIMutI	CAGTG	1 cut(s)	628
Cfr10I	RCCGGY	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	548
CspAI	ACCGGT	1 cut(s)	172
CviAII	CATG	6 cut(s)	78, 130, 242, 340, 490, 590
CviJI	RGCY	4 cut(s)	26, 92, 215, 227
CviKI_1	RGCY	4 cut(s)	26, 92, 215, 227
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	2 cut(s)	470, 585
DpnI	GATC	2 cut(s)	306, 537
DpnII	GATC	2 cut(s)	304, 535
DraIII	CACNNNGTG	1 cut(s)	456
Eam1104I	CTCTTC	4 cut(s)	107, 204, 451, 554
EarI	CTCTTC	4 cut(s)	107, 204, 451, 554
Eco130I	CCWWGG	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	491
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	6 cut(s)	81, 133, 245, 343, 493, 593
FatI	CATG	6 cut(s)	77, 129, 241, 339, 489, 589
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	626
FokI	GGATG	2 cut(s)	356, 380
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	2 cut(s)	231, 540
GluI	GCNGC	1 cut(s)	626
HapII	CCGG	2 cut(s)	173, 262
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	6 cut(s)	81, 133, 245, 343, 493, 593
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	3 cut(s)	218, 327, 404
HpaII	CCGG	2 cut(s)	173, 262
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	178, 271
Hpy188I	TCNGA	3 cut(s)	157, 558, 616
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	2 cut(s)	178, 271
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	213, 365
HpyCH4III	ACNGT	2 cut(s)	147, 632
HpyCH4IV	ACGT	3 cut(s)	84, 180, 290
HpyCH4V	TGCA	6 cut(s)	7, 194, 313, 416, 489, 625
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	470, 585
HpySE526I	ACGT	3 cut(s)	84, 180, 290
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	6 cut(s)	81, 133, 245, 343, 493, 593
Kzo9I	GATC	2 cut(s)	304, 535
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	6 cut(s)	40, 106, 186, 275, 304, 585
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	4 cut(s)	175, 203, 565, 630
MaeI	CTAG	2 cut(s)	231, 540
MaeII	ACGT	3 cut(s)	84, 180, 290
MaeIII	GTNAC	2 cut(s)	73, 125
MalI	GATC	2 cut(s)	306, 537
MboI	GATC	2 cut(s)	304, 535
MboII	GAAGA	6 cut(s)	58, 124, 191, 438, 509, 571
MflI	RGATCY	1 cut(s)	535
MluCI	AATT	4 cut(s)	49, 396, 417, 510
MnlI	CCTC	6 cut(s)	151, 275, 317, 454, 457, 555
Mph1103I	ATGCAT	1 cut(s)	491
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	3 cut(s)	33, 399, 646
MslI	CAYNNNNRTG	1 cut(s)	62
MspA1I	CMGCKG	1 cut(s)	215
MspCI	CTTAAG	1 cut(s)	32
MspI	CCGG	2 cut(s)	173, 262
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	491
MwoI	GCNNNNNNNGC	1 cut(s)	422
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	2 cut(s)	304, 535
NlaIII	CATG	6 cut(s)	81, 133, 245, 343, 493, 593
NlaIV	GGNNCC	1 cut(s)	537
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	491
NspV	TTCGAA	1 cut(s)	294
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	1 cut(s)	491
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	218, 327, 404
PinAI	ACCGGT	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	627
Ple19I	CGATCG	1 cut(s)	307
PsiI	TTATAA	1 cut(s)	528
PspN4I	GGNNCC	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	535
PvuI	CGATCG	1 cut(s)	307
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	33, 399, 646
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	2 cut(s)	304, 535
ScrFI	CCNGG	1 cut(s)	263
SfaNI	GCATC	4 cut(s)	175, 203, 565, 630
SfuI	TTCGAA	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	4 cut(s)	49, 396, 417, 510
SspMI	CTAG	2 cut(s)	231, 540
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	147, 632
TaiI	ACGT	3 cut(s)	87, 183, 293
TaqI	TCGA	3 cut(s)	183, 294, 307
TasI	AATT	4 cut(s)	49, 396, 417, 510
TfiI	GAWTC	3 cut(s)	218, 327, 404
Tru1I	TTAA	3 cut(s)	33, 399, 646
Tru9I	TTAA	3 cut(s)	33, 399, 646
TscAI	CASTG	1 cut(s)	635
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	625
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	5 cut(s)	46, 195, 328, 506, 606
TspRI	CASTG	1 cut(s)	635
Vha464I	CTTAAG	1 cut(s)	32
XapI	RAATTY	1 cut(s)	510
XcmI	CCANNNNNNNNNTGG	2 cut(s)	388, 457
XmaJI	CCTAGG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	2 cut(s)	231, 540
ZraI	GACGTC	1 cut(s)	181
Zsp2I	ATGCAT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.