Rroxscaffold_3G00235100

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000466
Physical Location & Seq
Reverse (-)
21887030 .. 21892852
5823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00235100.1

Sequence Viewer

Length: 1275 bp
ATGAAAACTTGCAATCCCAATACCCAACATCCCTTCTCCGTCCCACCATCAAATTCCTCCAACCTCCATGATCGGACCTTTCGGGTTAATTTGACCGGCGATTCGGTTATGAAGCTCGGGGACAGCGTCGGCGAGAAGCTTAAGGAGTTTATGGGGATTGGGATTAGAGGGACAGATGTGAAAAGCTGTGGATTGATGGGGGCTGTTACATGTGTCGGTTTCATGGTGATCATCAAGTGGATATGGTATACAATGAAGCAGGGTCAAAATACGCTACAAGAGGATAATCCAGGATTAGTCGATGATGCCACTATGAAATCTTCATCAACAGGTCGGTCGAAGTATGATGTGTTTTTGAGTTTCAGGGGTCCTGACACTCGCAAAGGTATCACATCTGAATTATATTATCAACTGCAAAATCAAGGAATTCAAACATTCATGGATGACAAAGACCTTGAAGTAGGGGATAGTATTTCTCCTGAACTCCAAGAAGCAATTAAAGATTCAAGTTTCGCTATCATTGTTCTCTCGCAAAAGTATGCTGTTTCAACATGGTGTTTAGAGGAACTCACCAAGATTTGTGAATGTATGGAAGACAACAAAAAAATTTTGCCACTTTTTTATTATGTCGAGCCTACTGATGTACGATATCAGAAGAAGAGTTTCAAAGATGCTTTCACTGATCATATAAACTCTGGGCGATACAAATCAAAGACCATTCTGCAGTGGAGAGATGCTTTAAGCAAAGTGGCCAGTTTCACCGGGTGGACAACACAAGAATTTAGACTGTGGCCGGGAGACATCCAAATTGTACCCGGAGATGAGGAGTGGAAGTATGATGTGTTTTTGAGTTTCAGTGGTACTGACCGAGGTATCACAGATGAACTATACGATCGACTGCAAAGGAGGGGAATTAAAATGTTCAAGGATGATGGAGATCGTTTAGTAGGGCAAGTTATTTCTCACACTCTTACGGAAGCAATTGAAGAATCAAGGTTTTCAATCGTTGTACTGTCGCAAAATTATGCTCGTTCTTCTTGGTGTTTGGAGGAACTTAGAACGATCTGTGAGTGCATGGAAGACAAGAAGAGAATTCTGCCACTTTTTTATAATGTCCATCCTGCTGATGTACGATATCAGAGGGGGAGTTTCAATGATGCTTTCACTATGCATGCAAATTCTGGGCGAGATGGATCAGAGAAGGTGAAGCAATGGAGACATGCTCTACACAAAGTGGCCAATGTGTCAGGGTGGCATACAATGAATTATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

424

Amino Acids

48.6

Weight (kDa)

6.53

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 114 - 261 1.3e-41 TIR domain
TIR_2 PF13676 117 - 212 1.5e-17 TIR domain
TIR PF01582 278 - 422 5.7e-41 TIR domain
TIR_2 PF13676 281 - 375 2.1e-18 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1110, 1269
AccI GTMKAC 1 cut(s) 248
AclWI GGATC 1 cut(s) 1201
AcoI YGGCCR 3 cut(s) 750, 791, 1236
AcsI RAATTY 6 cut(s) 52, 426, 606, 779, 1092, 1177
AdeI CACNNNGTG 2 cut(s) 765, 1234
AfaI GTAC 5 cut(s) 645, 813, 862, 1011, 1131
AflII CTTAAG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 9 cut(s) 431, 458, 507, 549, 667, 925, 986, 1002, 1153
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 115, 139, 186
AluI AGCT 3 cut(s) 115, 139, 186
Alw26I GTCTC 2 cut(s) 792, 1210
AlwI GGATC 1 cut(s) 1201
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 3 cut(s) 750, 791, 1236
ApoI RAATTY 6 cut(s) 52, 426, 606, 779, 1092, 1177
ArsI GACNNNNNNTTYG 2 cut(s) 85, 117
Asp700I GAANNNNTTC 1 cut(s) 662
AspS9I GGNCC 2 cut(s) 75, 368
AsuC2I CCSGG 3 cut(s) 763, 795, 816
AsuHPI GGTGA 4 cut(s) 238, 562, 751, 1216
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 2 cut(s) 75, 368
BaeI ACNNNNGTAYC 2 cut(s) 856, 889
BalI TGGCCA 2 cut(s) 752, 1238
BbsI GAAGAC 2 cut(s) 600, 1086
BccI CCATC 5 cut(s) 55, 190, 926, 1125, 1184
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 2 cut(s) 228, 682
BcnI CCSGG 3 cut(s) 763, 795, 816
BcoDI GTCTC 2 cut(s) 792, 1210
BfmI CTRYAG 1 cut(s) 722
BfrI CTTAAG 1 cut(s) 140
Bme1390I CCNGG 4 cut(s) 291, 763, 795, 816
Bme18I GGWCC 2 cut(s) 75, 368
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 75, 368
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 4 cut(s) 291, 763, 795, 816
BmsI GCATC 4 cut(s) 295, 661, 724, 1147
BpiI GAAGAC 2 cut(s) 600, 1086
BplI GAGNNNNNCTC 2 cut(s) 1207, 1239
BpuMI CCSGG 3 cut(s) 763, 795, 816
BsaBI GATNNNNATC 2 cut(s) 706, 936
BsaJI CCNNGG 1 cut(s) 868
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 753
Bse3DI GCAATG 1 cut(s) 1217
Bse8I GATNNNNATC 2 cut(s) 706, 936
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 868
BseGI GGATG 5 cut(s) 28, 448, 801, 934, 1117
BseJI GATNNNNATC 2 cut(s) 706, 936
BseMI GCAATG 1 cut(s) 1217
BseNI ACTGG 1 cut(s) 753
BseRI GAGGAG 1 cut(s) 839
Bsh1285I CGRYCG 2 cut(s) 338, 895
BshFI GGCC 3 cut(s) 752, 793, 1238
BsiEI CGRYCG 2 cut(s) 338, 895
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 4 cut(s) 96, 762, 794, 816
BslFI GGGAC 3 cut(s) 26, 134, 184
BsmAI GTCTC 2 cut(s) 792, 1210
BsmFI GGGAC 3 cut(s) 26, 134, 184
BsnI GGCC 3 cut(s) 752, 793, 1238
BsoBI CYCGRG 1 cut(s) 116
Bsp143I GATC 7 cut(s) 70, 228, 682, 892, 937, 1062, 1193
BspANI GGCC 3 cut(s) 752, 793, 1238
BspLI GGNNCC 1 cut(s) 369
BspMAI CTGCAG 1 cut(s) 726
BspPI GGATC 1 cut(s) 1201
BspTI CTTAAG 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 1217
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 753
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 868
BssMI GATC 7 cut(s) 70, 228, 682, 892, 937, 1062, 1193
BssNAI GTATAC 1 cut(s) 249
Bst1107I GTATAC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 789, 1014
Bst6I CTCTTC 2 cut(s) 653, 1082
BstAFI CTTAAG 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 1173
BstDEI CTNAG 1 cut(s) 1055
BstF5I GGATG 5 cut(s) 28, 448, 801, 934, 1117
BstKTI GATC 7 cut(s) 73, 231, 685, 895, 940, 1065, 1196
BstMAI GTCTC 2 cut(s) 792, 1210
BstMBI GATC 7 cut(s) 70, 228, 682, 892, 937, 1062, 1193
BstMCI CGRYCG 2 cut(s) 338, 895
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 3 cut(s) 213, 1175, 1223
BstSCI CCNGG 4 cut(s) 289, 761, 793, 814
BstSFI CTRYAG 1 cut(s) 722
BstV2I GAAGAC 2 cut(s) 600, 1086
BstZ17I GTATAC 1 cut(s) 249
BsuRI GGCC 3 cut(s) 752, 793, 1238
BtsCI GGATG 5 cut(s) 28, 448, 801, 934, 1117
BtsI GCAGTG 1 cut(s) 731
BtsIMutI CAGTG 3 cut(s) 678, 731, 862
Cac8I GCNNGC 1 cut(s) 1173
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 75, 368
CseI GACGC 1 cut(s) 115
Csp6I GTAC 5 cut(s) 644, 812, 861, 1010, 1130
CviAII CATG 8 cut(s) 68, 210, 223, 439, 552, 1075, 1172, 1220
CviJI RGCY 8 cut(s) 115, 139, 186, 203, 634, 752, 793, 1238
CviKI_1 RGCY 8 cut(s) 115, 139, 186, 203, 634, 752, 793, 1238
CviQI GTAC 5 cut(s) 644, 812, 861, 1010, 1130
DdeI CTNAG 1 cut(s) 1055
DpnI GATC 7 cut(s) 72, 230, 684, 894, 939, 1064, 1195
DpnII GATC 7 cut(s) 70, 228, 682, 892, 937, 1062, 1193
DraIII CACNNNGTG 2 cut(s) 765, 1234
EaeI YGGCCR 3 cut(s) 750, 791, 1236
Eam1104I CTCTTC 2 cut(s) 653, 1082
EarI CTCTTC 2 cut(s) 653, 1082
Eco32I GATATC 2 cut(s) 650, 1136
Eco47I GGWCC 2 cut(s) 75, 368
Eco88I CYCGRG 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 368
EcoRI GAATTC 2 cut(s) 426, 1092
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 2 cut(s) 650, 1136
EcoT22I ATGCAT 1 cut(s) 1173
FaeI CATG 8 cut(s) 71, 213, 226, 442, 555, 1078, 1175, 1223
FaqI GGGAC 3 cut(s) 26, 134, 184
FatI CATG 8 cut(s) 67, 209, 222, 438, 551, 1074, 1171, 1219
FbaI TGATCA 2 cut(s) 228, 682
FblI GTMKAC 1 cut(s) 248
FokI GGATG 5 cut(s) 15, 455, 788, 941, 1104
HaeIII GGCC 3 cut(s) 752, 793, 1238
HapII CCGG 4 cut(s) 96, 762, 794, 816
HgaI GACGC 1 cut(s) 115
Hin1II CATG 8 cut(s) 71, 213, 226, 442, 555, 1078, 1175, 1223
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 3 cut(s) 101, 503, 989
HpaII CCGG 4 cut(s) 96, 762, 794, 816
HphI GGTGA 4 cut(s) 238, 562, 751, 1216
Hpy166II GTNNAC 2 cut(s) 249, 768
Hpy188I TCNGA 5 cut(s) 75, 397, 654, 1140, 1198
Hpy188III TCNNGA 2 cut(s) 371, 479
Hpy8I GTNNAC 2 cut(s) 249, 768
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 43, 1195
HpyCH4III ACNGT 2 cut(s) 789, 1014
HpyCH4V TGCA 7 cut(s) 12, 415, 724, 901, 1074, 1171, 1175
HpyF3I CTNAG 1 cut(s) 1055
Hsp92II CATG 8 cut(s) 71, 213, 226, 442, 555, 1078, 1175, 1223
Ksp22I TGATCA 2 cut(s) 228, 682
Kzo9I GATC 7 cut(s) 70, 228, 682, 892, 937, 1062, 1193
LweI GCATC 4 cut(s) 295, 661, 724, 1147
MaeIII GTNAC 1 cut(s) 205
MalI GATC 7 cut(s) 72, 230, 684, 894, 939, 1064, 1195
MboI GATC 7 cut(s) 70, 228, 682, 892, 937, 1062, 1193
MboII GAAGA 8 cut(s) 312, 605, 667, 670, 998, 1026, 1091, 1099
MfeI CAATTG 1 cut(s) 981
MlsI TGGCCA 2 cut(s) 752, 1238
MluNI TGGCCA 2 cut(s) 752, 1238
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 2 cut(s) 752, 1238
Mph1103I ATGCAT 1 cut(s) 1173
MroXI GAANNNNTTC 1 cut(s) 662
MscI TGGCCA 2 cut(s) 752, 1238
MseI TTAA 5 cut(s) 87, 141, 498, 740, 915
Msp20I TGGCCA 2 cut(s) 752, 1238
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 4 cut(s) 96, 762, 794, 816
MspR9I CCNGG 4 cut(s) 291, 763, 795, 816
MunI CAATTG 1 cut(s) 981
MvaI CCWGG 1 cut(s) 291
NciI CCSGG 3 cut(s) 763, 795, 816
NdeII GATC 7 cut(s) 70, 228, 682, 892, 937, 1062, 1193
NlaIII CATG 8 cut(s) 71, 213, 226, 442, 555, 1078, 1175, 1223
NlaIV GGNNCC 1 cut(s) 369
NsiI ATGCAT 1 cut(s) 1173
NspI RCATGY 3 cut(s) 213, 1175, 1223
PaeI GCATGC 1 cut(s) 1175
PciI ACATGT 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 662
PfeI GAWTC 3 cut(s) 101, 503, 989
PflFI GACNNNGTC 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 289
Ple19I CGATCG 1 cut(s) 895
PpuMI RGGWCCY 1 cut(s) 368
PscI ACATGT 1 cut(s) 209
PsiI TTATAA 2 cut(s) 1110, 1269
Psp5II RGGWCCY 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 2 cut(s) 75, 368
PspPPI RGGWCCY 1 cut(s) 368
PstI CTGCAG 1 cut(s) 726
PsyI GACNNNGTC 1 cut(s) 125
PvuI CGATCG 1 cut(s) 895
RsaI GTAC 5 cut(s) 645, 813, 862, 1011, 1131
RsaNI GTAC 5 cut(s) 644, 812, 861, 1010, 1130
SaqAI TTAA 5 cut(s) 87, 141, 498, 740, 915
Sau3AI GATC 7 cut(s) 70, 228, 682, 892, 937, 1062, 1193
Sau96I GGNCC 2 cut(s) 75, 368
ScrFI CCNGG 4 cut(s) 291, 763, 795, 816
SfaNI GCATC 4 cut(s) 295, 661, 724, 1147
SfcI CTRYAG 1 cut(s) 722
SinI GGWCC 2 cut(s) 75, 368
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SphI GCATGC 1 cut(s) 1175
StyD4I CCNGG 4 cut(s) 289, 761, 793, 814
TaaI ACNGT 2 cut(s) 789, 1014
TaqI TCGA 4 cut(s) 300, 338, 630, 895
TaqII GACCGA 2 cut(s) 324, 882
TatI WGTACW 1 cut(s) 1009
TfiI GAWTC 3 cut(s) 101, 503, 989
Tru1I TTAA 5 cut(s) 87, 141, 498, 740, 915
Tru9I TTAA 5 cut(s) 87, 141, 498, 740, 915
TscAI CASTG 3 cut(s) 685, 731, 862
TspDTI ATGAA 8 cut(s) 17, 125, 211, 269, 312, 329, 427, 897
TspGWI ACGGA 2 cut(s) 28, 989
TspRI CASTG 3 cut(s) 685, 731, 862
Tth111I GACNNNGTC 1 cut(s) 125
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 75, 368
XapI RAATTY 6 cut(s) 52, 426, 606, 779, 1092, 1177
XceI RCATGY 3 cut(s) 213, 1175, 1223
XmiI GTMKAC 1 cut(s) 248
XmnI GAANNNNTTC 1 cut(s) 662
Zsp2I ATGCAT 1 cut(s) 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.