Rroxscaffold_6G00408180

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000466
Physical Location & Seq
Reverse (-)
30661875 .. 30662426
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00408180.1

Sequence Viewer

Length: 552 bp
ATGGTTGAAAAGCCTGAGCCAATATCAGACAATAATCAAGAAATGGTTGACGTCGATGACTATGCATCTCTTCCTTCATCATCAGCTCCTAGCTGGAAGCATGATGTGTTTTTGAGTTTCAGAGGTTTAGACACTCGCAAAGGAATTGCATTTGAATTATACGATCGACTGCAAAACAGGAGAGGAATCAAAACATTCATGGATGACCAAGACCTTCAAGTAGGGGATGTTATTTCTCCAACACTCCTAACGGCAATTAAAGAATCAAGGTTTGCAATTATTGTTCTCTCTCAAAACTATGCCTCTTCCAATTGGTGTTTGGAGGAACTTAGAAACATTTGTGAATGCATGGAAGAAGACAACAATAGAATTCTGCCACTTTTTTATAATGTGGATCCTAGTGATGTACGAAATCAGAAGAGGAGTTTCGGAGATGCTTTCACTAAACTTGAAAAATCTGGGAAACACAAATCAGAAAAGGTGCAGCAGTGGAGAGATGCTTTAAAAAAAGTGGCAAATTTATCTGGATGGCATACACAGAATTATAAGTAA

Protein Analysis

183

Amino Acids

21.15

Weight (kDa)

5.68

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 33 - 182 7.9e-50 TIR domain
TIR_2 PF13676 36 - 144 5.2e-18 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 387, 546
AatII GACGTC 1 cut(s) 54
AclWI GGATC 2 cut(s) 389, 402
AcsI RAATTY 2 cut(s) 369, 517
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 408
AgsI TTSAA 4 cut(s) 8, 155, 218, 452
AluBI AGCT 2 cut(s) 86, 93
AluI AGCT 2 cut(s) 86, 93
AlwI GGATC 2 cut(s) 389, 402
ApeKI GCWGC 1 cut(s) 484
ApoI RAATTY 2 cut(s) 369, 517
BamHI GGATCC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 496
BccI CCATC 1 cut(s) 522
BceAI ACGGC 1 cut(s) 267
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BfaI CTAG 2 cut(s) 90, 399
BisI GCNGC 1 cut(s) 485
BlsI GCNGC 1 cut(s) 486
BmiI GGNNCC 1 cut(s) 396
BmsI GCATC 3 cut(s) 74, 424, 487
BpiI GAAGAC 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 51
BseGI GGATG 3 cut(s) 208, 232, 533
BseMII CTCAG 1 cut(s) 6
BseRI GAGGAG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 496
BsgI GTGCAG 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 166
BsmI GAATGC 1 cut(s) 350
Bsp143I GATC 2 cut(s) 163, 394
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 2 cut(s) 389, 402
BssMI GATC 2 cut(s) 163, 394
BssNI GRCGYC 1 cut(s) 51
Bst6I CTCTTC 3 cut(s) 75, 310, 413
BstACI GRCGYC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 15, 329
BstF5I GGATG 3 cut(s) 208, 232, 533
BstKTI GATC 2 cut(s) 166, 397
BstMBI GATC 2 cut(s) 163, 394
BstMCI CGRYCG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 496
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BtsCI GGATG 3 cut(s) 208, 232, 533
BtsI GCAGTG 1 cut(s) 494
BtsIMutI CAGTG 1 cut(s) 494
Csp6I GTAC 1 cut(s) 407
CviAII CATG 3 cut(s) 101, 199, 349
CviJI RGCY 4 cut(s) 13, 19, 86, 93
CviKI_1 RGCY 4 cut(s) 13, 19, 86, 93
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 2 cut(s) 15, 329
DpnI GATC 2 cut(s) 165, 396
DpnII GATC 2 cut(s) 163, 394
DraI TTTAAA 1 cut(s) 504
Eam1104I CTCTTC 3 cut(s) 75, 310, 413
EarI CTCTTC 3 cut(s) 75, 310, 413
EcoRI GAATTC 1 cut(s) 369
EcoT22I ATGCAT 2 cut(s) 67, 350
FaeI CATG 3 cut(s) 104, 202, 352
FaiI YATR 9 cut(s) 63, 102, 160, 200, 300, 350, 387, 534, 546
FatI CATG 3 cut(s) 100, 198, 348
Fnu4HI GCNGC 1 cut(s) 485
FokI GGATG 3 cut(s) 215, 239, 540
Fsp4HI GCNGC 1 cut(s) 485
FspBI CTAG 2 cut(s) 90, 399
GluI GCNGC 1 cut(s) 485
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 3 cut(s) 104, 202, 352
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 2 cut(s) 186, 263
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 5 cut(s) 28, 122, 417, 431, 475
Hpy188III TCNNGA 2 cut(s) 38, 525
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 84, 224
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 6 cut(s) 65, 149, 172, 275, 348, 484
HpyF3I CTNAG 2 cut(s) 15, 329
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 3 cut(s) 104, 202, 352
Kzo9I GATC 2 cut(s) 163, 394
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 5 cut(s) 27, 79, 163, 444, 510
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 3 cut(s) 74, 424, 487
MaeI CTAG 2 cut(s) 90, 399
MaeII ACGT 1 cut(s) 51
MalI GATC 2 cut(s) 165, 396
MboI GATC 2 cut(s) 163, 394
MboII GAAGA 5 cut(s) 62, 297, 365, 368, 430
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 1 cut(s) 394
MluCI AATT 8 cut(s) 144, 155, 255, 276, 310, 369, 517, 541
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 5 cut(s) 116, 176, 313, 316, 414
Mph1103I ATGCAT 2 cut(s) 67, 350
MseI TTAA 2 cut(s) 258, 503
MunI CAATTG 1 cut(s) 310
Mva1269I GAATGC 1 cut(s) 350
NdeII GATC 2 cut(s) 163, 394
NlaIII CATG 3 cut(s) 104, 202, 352
NlaIV GGNNCC 1 cut(s) 396
NsiI ATGCAT 2 cut(s) 67, 350
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 186, 263
PkrI GCNGC 1 cut(s) 486
Ple19I CGATCG 1 cut(s) 166
PsiI TTATAA 2 cut(s) 387, 546
PspN4I GGNNCC 1 cut(s) 396
PsuI RGATCY 1 cut(s) 394
PvuI CGATCG 1 cut(s) 166
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
SaqAI TTAA 2 cut(s) 258, 503
SatI GCNGC 1 cut(s) 485
Sau3AI GATC 2 cut(s) 163, 394
SetI ASST 7 cut(s) 54, 88, 95, 127, 216, 272, 483
SfaNI GCATC 3 cut(s) 74, 424, 487
Sse9I AATT 8 cut(s) 144, 155, 255, 276, 310, 369, 517, 541
SspMI CTAG 2 cut(s) 90, 399
TaiI ACGT 1 cut(s) 54
TaqI TCGA 2 cut(s) 54, 166
TasI AATT 8 cut(s) 144, 155, 255, 276, 310, 369, 517, 541
TfiI GAWTC 2 cut(s) 186, 263
Tru1I TTAA 2 cut(s) 258, 503
Tru9I TTAA 2 cut(s) 258, 503
TscAI CASTG 1 cut(s) 494
TseI GCWGC 1 cut(s) 484
TspDTI ATGAA 2 cut(s) 66, 187
TspRI CASTG 1 cut(s) 494
XapI RAATTY 2 cut(s) 369, 517
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XspI CTAG 2 cut(s) 90, 399
ZraI GACGTC 1 cut(s) 52
Zsp2I ATGCAT 2 cut(s) 67, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.