RchiOBHm_Chr6g0244841

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000466
Physical Location & Seq
Forward (+)
823509 .. 824742
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21942

Sequence Viewer

Length: 687 bp
ATGGAGTCAACCCCTTCTCGTCGTCGACGGAAGTACGATGTGTTTTTAAGTTTCAGAGGGCCAGATACGCGAAAGGGGATTACCTCCGAGCTGTATCAGAGACTAGAACGGAGAGGAATTGAAACCTTTATGGATGACCCGGATCTTCAGGTAGGAGATTCCATTAGCCCTAAACTTTTGGCTGCAATTGAGGAGTCAAGATTTGCCGTTGTTATTCTTTCACCCAACTACGCTTCTTCGCCATGGTGCTTGGAAGAACTCGTCAAGATTATTCAGTGCATGAAAGAGACAGGGCTACGAGTCATGCCCGTGTTCTACAACGTGGAGCCTTGCGAAGTGCGGCACCAAATGGGAAGTTTTGAGCTCAAAAGGAAACCCCGACCCCAAGTGGACGTGGAAGTAAGGGAATATGAAGAAGCTTATGGCAAGACTGAGGATACATTAAAGGCGTGGAGAGCTGCTTTGACAGAGGTAGCCAATCTTTCTGGGTGGGATTCAAAGAAGTTTAGTACTGATAGAGAACTTGTTGAGGCAATTGTTTGGAAAATTGAGAGTAAGGTGGTGTATAAATCTTCAAGTGTTGACAAGGGCTTCGTAGGAATGGATTCCCGTCTTGATGATTTATTACGTGAGTACATATATCCAGAGTTGGATGAGGTACGTATTATAGGGATACATGGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

228

Amino Acids

26.4

Weight (kDa)

5.49

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 193 5.8e-51 TIR domain
TIR_2 PF13676 14 - 112 7.8e-20 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 342
AccI GTMKAC 1 cut(s) 25
AccII CGCG 1 cut(s) 70
AciI CCGC 1 cut(s) 340
AclWI GGATC 1 cut(s) 150
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 4 cut(s) 35, 511, 635, 660
AgsI TTSAA 3 cut(s) 122, 498, 576
AjiI CACGTC 1 cut(s) 394
AluBI AGCT 4 cut(s) 91, 364, 419, 458
AluI AGCT 4 cut(s) 91, 364, 419, 458
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 94, 281
AlwI GGATC 1 cut(s) 150
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 182, 458
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
Asp700I GAANNNNTTC 1 cut(s) 604
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 213
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 169, 445
BceAI ACGGC 1 cut(s) 191
BciVI GTATCC 2 cut(s) 430, 666
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 94, 281
BfaI CTAG 1 cut(s) 104
BfuI GTATCC 2 cut(s) 430, 666
BisI GCNGC 3 cut(s) 183, 341, 459
BlsI GCNGC 3 cut(s) 184, 342, 460
BmcAI AGTACT 1 cut(s) 511
Bme1390I CCNGG 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 327, 344
BmrFI CCNGG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 140
BsaAI YACGTR 2 cut(s) 629, 662
BsaJI CCNNGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 139, 658
BseMII CTCAG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 2 cut(s) 169, 445
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 366
BsiSI CCGG 1 cut(s) 140
BsmAI GTCTC 2 cut(s) 94, 281
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 1 cut(s) 142
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 1 cut(s) 340
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 327, 344
BspPI GGATC 1 cut(s) 150
BspT107I GGYRCC 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 242
BstBAI YACGTR 2 cut(s) 629, 662
BstDEI CTNAG 1 cut(s) 432
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 139, 658
BstFNI CGCG 1 cut(s) 70
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 2 cut(s) 94, 281
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 67, 455
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 1 cut(s) 138
BstSNI TACGTA 1 cut(s) 662
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 169, 445
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuI GTATCC 2 cut(s) 430, 666
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 242
BtrI CACGTC 1 cut(s) 394
BtsCI GGATG 2 cut(s) 139, 658
BtsIMutI CAGTG 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 4 cut(s) 34, 510, 634, 659
CviAII CATG 5 cut(s) 243, 280, 304, 677, 682
CviQI GTAC 4 cut(s) 34, 510, 634, 659
DdeI CTNAG 1 cut(s) 432
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 364
Eco105I TACGTA 1 cut(s) 662
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 5 cut(s) 246, 283, 307, 680, 685
FatI CATG 5 cut(s) 242, 279, 303, 676, 681
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 3 cut(s) 183, 341, 459
FokI GGATG 2 cut(s) 146, 665
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 3 cut(s) 183, 341, 459
FspBI CTAG 1 cut(s) 104
GluI GCNGC 3 cut(s) 183, 341, 459
HaeIII GGCC 1 cut(s) 61
HapII CCGG 1 cut(s) 140
Hin1II CATG 5 cut(s) 246, 283, 307, 680, 685
HincII GTYRAC 3 cut(s) 9, 26, 583
HindII GTYRAC 3 cut(s) 9, 26, 583
HindIII AAGCTT 1 cut(s) 417
HinfI GANTC 6 cut(s) 5, 158, 194, 300, 494, 605
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 213
Hpy166II GTNNAC 4 cut(s) 9, 26, 391, 583
Hpy188I TCNGA 3 cut(s) 56, 88, 99
Hpy188III TCNNGA 4 cut(s) 198, 265, 614, 644
Hpy8I GTNNAC 4 cut(s) 9, 26, 391, 583
Hpy99I CGWCG 3 cut(s) 24, 27, 30
HpyAV CCTTC 1 cut(s) 24
HpyCH4IV ACGT 4 cut(s) 321, 393, 628, 661
HpyCH4V TGCA 2 cut(s) 185, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 455
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 4 cut(s) 321, 393, 628, 661
Hsp92II CATG 5 cut(s) 246, 283, 307, 680, 685
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 6 cut(s) 75, 134, 153, 276, 471, 657
Lsp1109I GCAGC 2 cut(s) 169, 445
MaeI CTAG 1 cut(s) 104
MaeII ACGT 4 cut(s) 321, 393, 628, 661
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 5 cut(s) 137, 228, 266, 425, 564
MfeI CAATTG 2 cut(s) 186, 534
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 4 cut(s) 117, 186, 534, 546
MlyI GAGTC 3 cut(s) 14, 203, 309
MmeI TCCRAC 1 cut(s) 630
MnlI CCTC 8 cut(s) 50, 94, 107, 184, 427, 463, 523, 649
MroXI GAANNNNTTC 1 cut(s) 604
MseI TTAA 2 cut(s) 47, 443
MslI CAYNNNNRTG 1 cut(s) 308
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 140
MunI CAATTG 2 cut(s) 186, 534
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 67, 455
NciI CCSGG 1 cut(s) 140
NcoI CCATGG 1 cut(s) 242
NdeII GATC 1 cut(s) 142
NlaIII CATG 5 cut(s) 246, 283, 307, 680, 685
NlaIV GGNNCC 2 cut(s) 327, 344
NspI RCATGY 1 cut(s) 685
PdmI GAANNNNTTC 1 cut(s) 604
PfeI GAWTC 3 cut(s) 158, 494, 605
PkrI GCNGC 3 cut(s) 184, 342, 460
PleI GAGTC 3 cut(s) 13, 202, 308
PpsI GAGTC 3 cut(s) 13, 202, 308
Ppu21I YACGTR 2 cut(s) 629, 662
Psp124BI GAGCTC 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 327, 344
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 4 cut(s) 35, 511, 635, 660
RsaNI GTAC 4 cut(s) 34, 510, 634, 659
RseI CAYNNNNRTG 1 cut(s) 308
SacI GAGCTC 1 cut(s) 366
SalI GTCGAC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 47, 443
SatI GCNGC 3 cut(s) 183, 341, 459
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 59
ScaI AGTACT 1 cut(s) 511
SchI GAGTC 3 cut(s) 14, 203, 309
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 1 cut(s) 366
SgrDI CGTCGACG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 308
SnaBI TACGTA 1 cut(s) 662
Sse9I AATT 4 cut(s) 117, 186, 534, 546
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 104
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 242
TaiI ACGT 4 cut(s) 324, 396, 631, 664
TaqI TCGA 1 cut(s) 25
TasI AATT 4 cut(s) 117, 186, 534, 546
TatI WGTACW 2 cut(s) 509, 633
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 3 cut(s) 158, 494, 605
Tru1I TTAA 2 cut(s) 47, 443
Tru9I TTAA 2 cut(s) 47, 443
TscAI CASTG 1 cut(s) 281
TseI GCWGC 2 cut(s) 182, 458
TspDTI ATGAA 2 cut(s) 296, 426
TspGWI ACGGA 2 cut(s) 43, 124
TspRI CASTG 1 cut(s) 281
XceI RCATGY 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 604
XspI CTAG 1 cut(s) 104
ZrmI AGTACT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.