Rmu_sc0040474.1_g000001

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040474.1
OG0000466
Physical Location & Seq
Reverse (-)
114 .. 683
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040474.1_g000001.1.cds

Sequence Viewer

Length: 570 bp
ctggtcgacgtcgttgaaaccccagagccaatatcagaggataatcaagaactggttgacgtcgatgtctctgcatctcttccttcatcattagctaaatcatcagctcctaggtggaagcatgatgtgttttttagcttcaggggtgcagacactcgtaagggtattacctcctttttatacgatcgactgcaaaacagaggaatcaaaacattcatggatgaccaggaccttcaagtaggggatgttatttctcccactctcctaacggcaattaaagaatcaaggtttgcagttattgttctctctcaaaactatgcctcttccacttggtgtttggaggaacttagaaacatttgtgaatgcatggaagaagacaaaaatagaattctgccacttttttattatgtggatcctactgatgtacgacatcagaagaggagtttcggagatgctttctctaagcatgaaaaatttgggcgacacagatcagagaagctgcagcagtggagatatgctttaacaaaagtggcaaatttctccgggtggcatacactgaattataagtaa

Protein Analysis

189

Amino Acids

21.87

Weight (kDa)

6.24

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AasI GACNNNNNNGTC 1 cut(s) 65
AatII GACGTC 2 cut(s) 12, 63
AccI GTMKAC 1 cut(s) 6
AclWI GGATC 2 cut(s) 407, 420
AcsI RAATTY 3 cut(s) 387, 473, 535
AcuI CTGAAG 1 cut(s) 124
AcyI GRCGYC 2 cut(s) 9, 60
AdeI CACNNNGTG 1 cut(s) 333
AfaI GTAC 1 cut(s) 426
AgsI TTSAA 2 cut(s) 17, 236
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 4 cut(s) 95, 107, 138, 499
AluI AGCT 4 cut(s) 95, 107, 138, 499
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 407, 420
ApeKI GCWGC 2 cut(s) 499, 502
ApoI RAATTY 3 cut(s) 387, 473, 535
AspA2I CCTAGG 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 544
AvaII GGWCC 1 cut(s) 229
AvrII CCTAGG 1 cut(s) 110
BamHI GGATCC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 381
BbvI GCAGC 2 cut(s) 486, 514
BceAI ACGGC 1 cut(s) 285
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 1 cut(s) 227
BcnI CCSGG 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 500
BisI GCNGC 2 cut(s) 500, 503
BlnI CCTAGG 1 cut(s) 110
BlsI GCNGC 2 cut(s) 501, 504
Bme1390I CCNGG 2 cut(s) 227, 544
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 2 cut(s) 227, 544
BmsI GCATC 2 cut(s) 83, 442
BpiI GAAGAC 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 544
BsaHI GRCGYC 2 cut(s) 9, 60
BsaJI CCNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 226, 250
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 454
BseXI GCAGC 2 cut(s) 486, 514
BsgI GTGCAG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 1 cut(s) 543
BsmAI GTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 368
Bsp143I GATC 3 cut(s) 184, 412, 488
BspLI GGNNCC 1 cut(s) 414
BspMAI CTGCAG 1 cut(s) 504
BspPI GGATC 2 cut(s) 407, 420
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 3 cut(s) 184, 412, 488
BssNI GRCGYC 2 cut(s) 9, 60
BssT1I CCWWGG 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 227
Bst6I CTCTTC 3 cut(s) 84, 328, 431
BstACI GRCGYC 2 cut(s) 9, 60
BstDEI CTNAG 2 cut(s) 347, 462
BstF5I GGATG 2 cut(s) 226, 250
BstKTI GATC 3 cut(s) 187, 415, 491
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 184, 412, 488
BstMCI CGRYCG 1 cut(s) 187
BstNI CCWGG 1 cut(s) 227
BstSCI CCNGG 2 cut(s) 225, 542
BstSFI CTRYAG 1 cut(s) 500
BstV1I GCAGC 2 cut(s) 486, 514
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtsCI GGATG 2 cut(s) 226, 250
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 2 cut(s) 512, 554
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 425
CviAII CATG 4 cut(s) 122, 217, 367, 467
CviJI RGCY 5 cut(s) 28, 95, 107, 138, 499
CviKI_1 RGCY 5 cut(s) 28, 95, 107, 138, 499
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 2 cut(s) 347, 462
DpnI GATC 3 cut(s) 186, 414, 490
DpnII GATC 3 cut(s) 184, 412, 488
DraIII CACNNNGTG 1 cut(s) 333
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 3 cut(s) 84, 328, 431
EarI CTCTTC 3 cut(s) 84, 328, 431
Eco130I CCWWGG 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 110
EcoT22I ATGCAT 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 110
FaeI CATG 4 cut(s) 125, 220, 370, 470
FatI CATG 4 cut(s) 121, 216, 366, 466
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 500, 503
FokI GGATG 2 cut(s) 233, 257
Fsp4HI GCNGC 2 cut(s) 500, 503
FspBI CTAG 1 cut(s) 111
GluI GCNGC 2 cut(s) 500, 503
HapII CCGG 1 cut(s) 543
Hin1I GRCGYC 2 cut(s) 9, 60
Hin1II CATG 4 cut(s) 125, 220, 370, 470
HincII GTYRAC 2 cut(s) 7, 58
HindII GTYRAC 2 cut(s) 7, 58
HinfI GANTC 2 cut(s) 204, 281
HpaII CCGG 1 cut(s) 543
Hpy166II GTNNAC 2 cut(s) 7, 58
Hpy188I TCNGA 4 cut(s) 37, 435, 449, 493
Hpy188III TCNNGA 1 cut(s) 47
Hpy8I GTNNAC 2 cut(s) 7, 58
Hpy99I CGWCG 3 cut(s) 11, 14, 65
HpyAV CCTTC 2 cut(s) 93, 242
HpyCH4IV ACGT 2 cut(s) 9, 60
HpyCH4V TGCA 6 cut(s) 74, 149, 193, 293, 366, 502
HpyF3I CTNAG 2 cut(s) 347, 462
HpySE526I ACGT 2 cut(s) 9, 60
Hsp92I GRCGYC 2 cut(s) 9, 60
Hsp92II CATG 4 cut(s) 125, 220, 370, 470
Kzo9I GATC 3 cut(s) 184, 412, 488
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 6 cut(s) 36, 38, 127, 212, 239, 556
Lsp1109I GCAGC 2 cut(s) 486, 514
LweI GCATC 2 cut(s) 83, 442
MaeI CTAG 1 cut(s) 111
MaeII ACGT 2 cut(s) 9, 60
MalI GATC 3 cut(s) 186, 414, 490
MboI GATC 3 cut(s) 184, 412, 488
MboII GAAGA 5 cut(s) 71, 315, 383, 386, 448
MflI RGATCY 1 cut(s) 412
MluCI AATT 5 cut(s) 273, 387, 473, 535, 559
MnlI CCTC 6 cut(s) 31, 181, 194, 331, 334, 432
Mph1103I ATGCAT 1 cut(s) 368
MseI TTAA 2 cut(s) 276, 521
MspI CCGG 1 cut(s) 543
MspR9I CCNGG 2 cut(s) 227, 544
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 1 cut(s) 227
NciI CCSGG 1 cut(s) 544
NdeII GATC 3 cut(s) 184, 412, 488
NlaIII CATG 4 cut(s) 125, 220, 370, 470
NlaIV GGNNCC 1 cut(s) 414
NsiI ATGCAT 1 cut(s) 368
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 204, 281
PkrI GCNGC 2 cut(s) 501, 504
Ple19I CGATCG 1 cut(s) 187
PpuMI RGGWCCY 1 cut(s) 229
PsiI TTATAA 1 cut(s) 564
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 225
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 414
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
PstI CTGCAG 1 cut(s) 504
PsuI RGATCY 1 cut(s) 412
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SalI GTCGAC 1 cut(s) 5
SaqAI TTAA 2 cut(s) 276, 521
SatI GCNGC 2 cut(s) 500, 503
Sau3AI GATC 3 cut(s) 184, 412, 488
Sau96I GGNCC 1 cut(s) 229
ScrFI CCNGG 2 cut(s) 227, 544
SfaNI GCATC 2 cut(s) 83, 442
SfcI CTRYAG 1 cut(s) 500
SinI GGWCC 1 cut(s) 229
Sse9I AATT 5 cut(s) 273, 387, 473, 535, 559
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 225, 542
StyI CCWWGG 1 cut(s) 110
TaiI ACGT 2 cut(s) 12, 63
TaqI TCGA 3 cut(s) 6, 63, 187
TasI AATT 5 cut(s) 273, 387, 473, 535, 559
TfiI GAWTC 2 cut(s) 204, 281
Tru1I TTAA 2 cut(s) 276, 521
Tru9I TTAA 2 cut(s) 276, 521
TscAI CASTG 2 cut(s) 512, 561
TseI GCWGC 2 cut(s) 499, 502
TspDTI ATGAA 3 cut(s) 75, 205, 483
TspRI CASTG 2 cut(s) 512, 561
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 3 cut(s) 387, 473, 535
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XmaJI CCTAGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 111
ZraI GACGTC 2 cut(s) 10, 61
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.