Rmu_sc0001639.1_g000003

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001639.1
OG0000466
Physical Location & Seq
Forward (+)
9761 .. 11201
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001639.1_g000003.1.cds

Sequence Viewer

Length: 1359 bp
atggcctcacgctcccaactagcatgtgccgcatcaattccttcgtcagctcctcgttggaagtatgatgtgtttttaagttttaggggtaaagatactcgcaagggtattacattcgaattatacaatcgactgcaaaataggagtggaattaaaacattcatggatgaccaagaccttgaagtaggggatgttatttctcctactctccttacggcaattgaagaatcaaggtttgcaattgtagttctctcactaaactatgcttcttctccatggtgtttggtggaacttacaaagatatgtcaatgcatgaaagacaataatagaattctgccacttttttatcacgtcgatccctctgatgtacgatatcagaagaggagttttgaggaggctttcacgaagcatgaaatctctgggcgacacagagaagaggtgcagcaatggagagatgctttgaagaaagtggccaatttctctggttggtatacacagaattataaaactgaaagagaacttgttgcagccattgtggaatctatgtgcagtaaaatacaacctagtgaaattgagtttacaatgcccaagggagattttgaagcatatgaagcaacaacacaagccatggataaggttatgaaggcgctacaagatgatgaggtcactgtcgtaggagtctatggaatgggaggtatcggaaagacgaccatggtggaacatgtcggtgcacaagcctgcaatactgggctttttgatcatgttattatggccgttgtatcccaaagccctgacttcagaaaaattcaaggcacattggcagatctgttggaattgaaattagagggggagacagaagttggaagagcttgtagattacagaaggagataattagtagaaataagatccttataatcttggacgacatttgggagatgatagacttgtcaagaataggaattcctagctatgaccagctccaaagacgcaattccaaagtccttctcaccacaaggagattcaatgtttgtcattccatggagagccagtcaagcatccctctcaatatcttatcagaagaagattcttggaaattgtttgtgaagaaagcaagaaagtcctttgaaaattcgactaatttctatgatattgcaaggaaggtagcaagagaatgtgctggtctaccagttgcgttgatagcagttgcgagggcacttggagataaagatttggatgaatggaaggaagcagctcgacgactgaaggcttcccaacctgtccaccctgaagatgggagagttgtgttgaaatgtataaaattaagctatgattacttgagatctgacagaggattatga

Protein Analysis

452

Amino Acids

51.42

Weight (kDa)

7.52

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 504, 914
AccI GTMKAC 2 cut(s) 491, 1183
AciI CCGC 1 cut(s) 30
AclWI GGATC 2 cut(s) 350, 901
AcoI YGGCCR 2 cut(s) 471, 771
AcsI RAATTY 4 cut(s) 330, 804, 960, 1129
AcuI CTGAAG 3 cut(s) 781, 1283, 1308
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 1 cut(s) 1292
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 9 cut(s) 182, 224, 463, 602, 809, 838, 1024, 1127, 1309
AjiI CACGTC 1 cut(s) 352
AluBI AGCT 6 cut(s) 50, 869, 969, 979, 1253, 1326
AluI AGCT 6 cut(s) 50, 869, 969, 979, 1253, 1326
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 1 cut(s) 845
Alw44I GTGCAC 1 cut(s) 729
AlwI GGATC 2 cut(s) 350, 901
AoxI GGCC 3 cut(s) 3, 471, 771
ApaLI GTGCAC 1 cut(s) 729
ApeKI GCWGC 3 cut(s) 442, 527, 1250
ApoI RAATTY 4 cut(s) 330, 804, 960, 1129
AspLEI GCGC 1 cut(s) 649
AsuHPI GGTGA 1 cut(s) 1000
AsuII TTCGAA 1 cut(s) 117
BaeGI GKGCMC 2 cut(s) 733, 1216
BalI TGGCCA 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 733
BbvI GCAGC 3 cut(s) 454, 539, 1262
BccI CCATC 1 cut(s) 1286
BceAI ACGGC 2 cut(s) 231, 758
BciVI GTATCC 1 cut(s) 790
BclI TGATCA 1 cut(s) 757
BcoDI GTCTC 1 cut(s) 845
BfaI CTAG 3 cut(s) 20, 564, 966
BfoI RGCGCY 1 cut(s) 650
BfuI GTATCC 1 cut(s) 790
BglII AGATCT 2 cut(s) 823, 1340
BisI GCNGC 4 cut(s) 30, 443, 528, 1251
BlsI GCNGC 4 cut(s) 31, 444, 529, 1252
BmgBI CACGTC 1 cut(s) 352
BmrI ACTGGG 1 cut(s) 756
BmsI GCATC 3 cut(s) 41, 445, 1065
BmuI ACTGGG 1 cut(s) 756
Bpu14I TTCGAA 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 1357
BsaJI CCNNGG 5 cut(s) 275, 588, 627, 711, 1038
BsaXI ACNNNNNCTCC 2 cut(s) 1034, 1064
Bsc4I CCNNNNNNNGG 1 cut(s) 1292
Bse1I ACTGG 3 cut(s) 751, 1048, 1187
Bse3DI GCAATG 1 cut(s) 452
BseDI CCNNGG 5 cut(s) 275, 588, 627, 711, 1038
BseGI GGATG 4 cut(s) 172, 196, 1056, 1240
BseLI CCNNNNNNNGG 1 cut(s) 1292
BseMI GCAATG 1 cut(s) 452
BseNI ACTGG 3 cut(s) 751, 1048, 1187
BseRI GAGGAG 3 cut(s) 42, 397, 407
BseSI GKGCMC 2 cut(s) 733, 1216
BseXI GCAGC 3 cut(s) 454, 539, 1262
BsgI GTGCAG 2 cut(s) 461, 568
BshFI GGCC 3 cut(s) 5, 473, 773
BsiHKAI GWGCWC 1 cut(s) 733
BslI CCNNNNNNNGG 1 cut(s) 1292
BsmAI GTCTC 1 cut(s) 845
BsnI GGCC 3 cut(s) 5, 473, 773
Bsp119I TTCGAA 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 733, 1216
Bsp143I GATC 5 cut(s) 355, 757, 823, 906, 1340
Bsp19I CCATGG 4 cut(s) 275, 627, 711, 1038
BspACI CCGC 1 cut(s) 30
BspANI GGCC 3 cut(s) 5, 473, 773
BspPI GGATC 2 cut(s) 350, 901
BspQI GCTCTTC 1 cut(s) 859
BspT104I TTCGAA 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 452
BsrI ACTGG 3 cut(s) 751, 1048, 1187
BssECI CCNNGG 5 cut(s) 275, 588, 627, 711, 1038
BssMI GATC 5 cut(s) 355, 757, 823, 906, 1340
BssNAI GTATAC 1 cut(s) 492
BssT1I CCWWGG 5 cut(s) 275, 588, 627, 711, 1038
Bst1107I GTATAC 1 cut(s) 492
Bst4CI ACNGT 1 cut(s) 670
Bst6I CTCTTC 3 cut(s) 374, 429, 859
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 739
BstDSI CCRYGG 4 cut(s) 275, 627, 711, 1038
BstF5I GGATG 4 cut(s) 172, 196, 1056, 1240
BstH2I RGCGCY 1 cut(s) 650
BstHHI GCGC 1 cut(s) 649
BstKTI GATC 5 cut(s) 358, 760, 826, 909, 1343
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 5 cut(s) 355, 757, 823, 906, 1340
BstMWI GCNNNNNNNGC 4 cut(s) 29, 611, 1053, 1199
BstNSI RCATGY 2 cut(s) 27, 725
BstSLI GKGCMC 2 cut(s) 733, 1216
BstV1I GCAGC 3 cut(s) 454, 539, 1262
BstX2I RGATCY 3 cut(s) 823, 906, 1340
BstYI RGATCY 3 cut(s) 823, 906, 1340
BstZ17I GTATAC 1 cut(s) 492
BsuI GTATCC 1 cut(s) 790
BsuRI GGCC 3 cut(s) 5, 473, 773
BtgI CCRYGG 4 cut(s) 275, 627, 711, 1038
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 4 cut(s) 172, 196, 1056, 1240
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 1 cut(s) 739
CfoI GCGC 1 cut(s) 649
CseI GACGC 1 cut(s) 996
Csp6I GTAC 1 cut(s) 368
CviQI GTAC 1 cut(s) 368
DpnI GATC 5 cut(s) 357, 759, 825, 908, 1342
DpnII GATC 5 cut(s) 355, 757, 823, 906, 1340
EaeI YGGCCR 2 cut(s) 471, 771
Eam1104I CTCTTC 3 cut(s) 374, 429, 859
EarI CTCTTC 3 cut(s) 374, 429, 859
Eco130I CCWWGG 5 cut(s) 275, 588, 627, 711, 1038
Eco32I GATATC 1 cut(s) 374
Eco57I CTGAAG 3 cut(s) 781, 1283, 1308
EcoRI GAATTC 2 cut(s) 330, 960
EcoRV GATATC 1 cut(s) 374
EcoT14I CCWWGG 5 cut(s) 275, 588, 627, 711, 1038
EcoT22I ATGCAT 1 cut(s) 314
ErhI CCWWGG 5 cut(s) 275, 588, 627, 711, 1038
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 1 cut(s) 757
FblI GTMKAC 2 cut(s) 491, 1183
Fnu4HI GCNGC 4 cut(s) 30, 443, 528, 1251
FokI GGATG 4 cut(s) 179, 203, 1043, 1247
Fsp4HI GCNGC 4 cut(s) 30, 443, 528, 1251
FspBI CTAG 3 cut(s) 20, 564, 966
GlaI GCGC 1 cut(s) 648
GluI GCNGC 4 cut(s) 30, 443, 528, 1251
HaeII RGCGCY 1 cut(s) 650
HaeIII GGCC 3 cut(s) 5, 473, 773
HgaI GACGC 1 cut(s) 996
HhaI GCGC 1 cut(s) 649
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HinfI GANTC 5 cut(s) 227, 539, 678, 1020, 1085
HphI GGTGA 1 cut(s) 1000
Hpy166II GTNNAC 5 cut(s) 492, 579, 731, 1184, 1282
Hpy188I TCNGA 6 cut(s) 364, 378, 701, 800, 1078, 1345
Hpy188III TCNNGA 2 cut(s) 403, 951
Hpy8I GTNNAC 5 cut(s) 492, 579, 731, 1184, 1282
Hpy99I CGWCG 2 cut(s) 356, 1260
HpyAV CCTTC 7 cut(s) 51, 637, 877, 1013, 1153, 1237, 1258
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 9 cut(s) 136, 239, 312, 442, 527, 549, 731, 741, 1154
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 611, 1053, 1199
HpySE526I ACGT 1 cut(s) 351
HspAI GCGC 1 cut(s) 647
Ksp22I TGATCA 1 cut(s) 757
Kzo9I GATC 5 cut(s) 355, 757, 823, 906, 1340
LguI GCTCTTC 1 cut(s) 859
LmnI GCTCC 3 cut(s) 17, 55, 984
Lsp1109I GCAGC 3 cut(s) 454, 539, 1262
LweI GCATC 3 cut(s) 41, 445, 1065
MaeI CTAG 3 cut(s) 20, 564, 966
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 664
MalI GATC 5 cut(s) 357, 759, 825, 908, 1342
MboI GATC 5 cut(s) 355, 757, 823, 906, 1340
MfeI CAATTG 2 cut(s) 219, 240
MflI RGATCY 3 cut(s) 823, 906, 1340
MhlI GDGCHC 2 cut(s) 733, 1216
MlsI TGGCCA 1 cut(s) 473
MluNI TGGCCA 1 cut(s) 473
MlyI GAGTC 1 cut(s) 687
MmeI TCCRAC 3 cut(s) 38, 810, 841
Mox20I TGGCCA 1 cut(s) 473
Mph1103I ATGCAT 1 cut(s) 314
MscI TGGCCA 1 cut(s) 473
MseI TTAA 3 cut(s) 77, 153, 1322
MslI CAYNNNNRTG 1 cut(s) 726
Msp20I TGGCCA 1 cut(s) 473
MunI CAATTG 2 cut(s) 219, 240
MwoI GCNNNNNNNGC 4 cut(s) 29, 611, 1053, 1199
NcoI CCATGG 4 cut(s) 275, 627, 711, 1038
NdeI CATATG 1 cut(s) 607
NdeII GATC 5 cut(s) 355, 757, 823, 906, 1340
NmuCI GTSAC 1 cut(s) 664
NsiI ATGCAT 1 cut(s) 314
NspI RCATGY 2 cut(s) 27, 725
NspV TTCGAA 1 cut(s) 117
PciI ACATGT 1 cut(s) 721
PciSI GCTCTTC 1 cut(s) 859
PfeI GAWTC 4 cut(s) 227, 539, 1020, 1085
PkrI GCNGC 4 cut(s) 31, 444, 529, 1252
PleI GAGTC 1 cut(s) 686
PpsI GAGTC 1 cut(s) 686
PscI ACATGT 1 cut(s) 721
PsiI TTATAA 2 cut(s) 504, 914
PsuI RGATCY 3 cut(s) 823, 906, 1340
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 726
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 3 cut(s) 77, 153, 1322
SatI GCNGC 4 cut(s) 30, 443, 528, 1251
Sau3AI GATC 5 cut(s) 355, 757, 823, 906, 1340
SchI GAGTC 1 cut(s) 687
SduI GDGCHC 2 cut(s) 733, 1216
SfaNI GCATC 3 cut(s) 41, 445, 1065
SfuI TTCGAA 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 726
SmlI CTYRAG 1 cut(s) 1336
SmoI CTYRAG 1 cut(s) 1336
SsiI CCGC 1 cut(s) 30
SspMI CTAG 3 cut(s) 20, 564, 966
StyI CCWWGG 5 cut(s) 275, 588, 627, 711, 1038
TaaI ACNGT 1 cut(s) 670
TaiI ACGT 1 cut(s) 354
TaqI TCGA 5 cut(s) 117, 130, 354, 1133, 1255
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 4 cut(s) 227, 539, 1020, 1085
Tru1I TTAA 3 cut(s) 77, 153, 1322
Tru9I TTAA 3 cut(s) 77, 153, 1322
TscAI CASTG 1 cut(s) 673
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 3 cut(s) 442, 527, 1250
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 6 cut(s) 151, 329, 426, 624, 656, 1251
TspRI CASTG 1 cut(s) 673
VneI GTGCAC 1 cut(s) 729
XapI RAATTY 4 cut(s) 330, 804, 960, 1129
XceI RCATGY 2 cut(s) 27, 725
XcmI CCANNNNNNNNNTGG 1 cut(s) 1289
XmiI GTMKAC 2 cut(s) 491, 1183
XspI CTAG 3 cut(s) 20, 564, 966
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.