Rorug05G0459600

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000466
Physical Location & Seq
Reverse (-)
63256538 .. 63257400
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0459600.1

Sequence Viewer

Length: 774 bp
ATGACCCAAGAGCCACGAACTCTGCAACTAATGGAGCTCCAAACCCCGCAACAAATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGGTACTGGTAGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Protein Analysis

257

Amino Acids

27.93

Weight (kDa)

5.03

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 48 - 109 6.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 642
AccB7I CCANNNNNTGG 1 cut(s) 467
AccIII TCCGGA 1 cut(s) 758
AciI CCGC 2 cut(s) 47, 708
AclI AACGTT 1 cut(s) 729
AclWI GGATC 7 cut(s) 195, 384, 432, 445, 465, 478, 513
AcuI CTGAAG 1 cut(s) 674
AcyI GRCGYC 1 cut(s) 639
AfaI GTAC 2 cut(s) 145, 382
AfeI AGCGCT 1 cut(s) 679
AfiI CCNNNNNNNGG 2 cut(s) 467, 629
AgsI TTSAA 1 cut(s) 605
AhlI ACTAGT 2 cut(s) 368, 497
AjnI CCWGG 2 cut(s) 146, 594
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 6 cut(s) 37, 107, 253, 464, 742, 764
AluI AGCT 6 cut(s) 37, 107, 253, 464, 742, 764
Alw21I GWGCWC 3 cut(s) 39, 630, 744
Alw26I GTCTC 1 cut(s) 251
Alw44I GTGCAC 1 cut(s) 626
AlwI GGATC 7 cut(s) 195, 384, 432, 445, 465, 478, 513
Ama87I CYCGRG 1 cut(s) 315
Aor13HI TCCGGA 1 cut(s) 758
Aor51HI AGCGCT 1 cut(s) 679
AoxI GGCC 1 cut(s) 458
ApaLI GTGCAC 1 cut(s) 626
ApeKI GCWGC 3 cut(s) 104, 347, 764
ArsI GACNNNNNNTTYG 4 cut(s) 437, 469, 470, 502
Asp700I GAANNNNTTC 1 cut(s) 370
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 3 cut(s) 411, 458, 492
AsuHPI GGTGA 1 cut(s) 584
AvaI CYCGRG 1 cut(s) 315
AvaII GGWCC 2 cut(s) 411, 492
BaeGI GKGCMC 3 cut(s) 218, 360, 630
BamHI GGATCC 2 cut(s) 437, 470
BanII GRGCYC 3 cut(s) 39, 316, 744
BauI CACGAG 1 cut(s) 236
Bbv12I GWGCWC 3 cut(s) 39, 630, 744
BbvI GCAGC 3 cut(s) 116, 334, 751
BccI CCATC 3 cut(s) 449, 506, 763
BceAI ACGGC 2 cut(s) 126, 646
BciT130I CCWGG 2 cut(s) 148, 596
BcoDI GTCTC 1 cut(s) 251
BcuI ACTAGT 2 cut(s) 368, 497
BfaI CTAG 3 cut(s) 369, 498, 772
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 681
BglII AGATCT 1 cut(s) 240
BisI GCNGC 3 cut(s) 105, 348, 765
BlpI GCTNAGC 1 cut(s) 743
BlsI GCNGC 3 cut(s) 106, 349, 766
Bme1390I CCNGG 2 cut(s) 148, 596
Bme18I GGWCC 2 cut(s) 411, 492
BmeT110I CYCGRG 1 cut(s) 315
BmgT120I GGNCC 3 cut(s) 411, 458, 492
BmiI GGNNCC 7 cut(s) 60, 299, 412, 439, 472, 493, 541
BmrFI CCNGG 2 cut(s) 148, 596
BpmI CTGGAG 4 cut(s) 147, 233, 336, 576
Bpu10I CCTNAGC 1 cut(s) 703
Bpu1102I GCTNAGC 1 cut(s) 743
BpuEI CTTGAG 2 cut(s) 167, 758
BsaHI GRCGYC 1 cut(s) 639
BsaJI CCNNGG 1 cut(s) 666
BsaWI WCCGGW 1 cut(s) 758
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 629
Bse1I ACTGG 6 cut(s) 259, 353, 388, 421, 430, 559
BseAI TCCGGA 1 cut(s) 758
BseBI CCWGG 2 cut(s) 148, 596
BseDI CCNNGG 1 cut(s) 666
BseGI GGATG 2 cut(s) 566, 755
BseLI CCNNNNNNNGG 2 cut(s) 467, 629
BseMII CTCAG 2 cut(s) 717, 757
BseNI ACTGG 6 cut(s) 259, 353, 388, 421, 430, 559
BseRI GAGGAG 3 cut(s) 98, 597, 600
BseSI GKGCMC 3 cut(s) 218, 360, 630
BseXI GCAGC 3 cut(s) 116, 334, 751
BshFI GGCC 1 cut(s) 460
BsiHKAI GWGCWC 3 cut(s) 39, 630, 744
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 1 cut(s) 759
BslI CCNNNNNNNGG 2 cut(s) 467, 629
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 1 cut(s) 460
BsoBI CYCGRG 1 cut(s) 315
Bsp1286I GDGCHC 6 cut(s) 39, 218, 316, 360, 630, 744
Bsp13I TCCGGA 1 cut(s) 758
Bsp143I GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
Bsp1720I GCTNAGC 1 cut(s) 743
BspACI CCGC 2 cut(s) 47, 708
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 2 cut(s) 716, 756
BspEI TCCGGA 1 cut(s) 758
BspLI GGNNCC 7 cut(s) 60, 299, 412, 439, 472, 493, 541
BspPI GGATC 7 cut(s) 195, 384, 432, 445, 465, 478, 513
BsrI ACTGG 6 cut(s) 259, 353, 388, 421, 430, 559
BssECI CCNNGG 1 cut(s) 666
BssMI GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
BssNI GRCGYC 1 cut(s) 639
BssSI CACGAG 1 cut(s) 236
Bst2BI CACGAG 1 cut(s) 236
Bst2UI CCWGG 2 cut(s) 148, 596
Bst4CI ACNGT 1 cut(s) 719
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 1 cut(s) 639
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 703, 743
BstEII GGTNACC 2 cut(s) 647, 710
BstF5I GGATG 2 cut(s) 566, 755
BstH2I RGCGCY 1 cut(s) 681
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 9 cut(s) 190, 243, 392, 400, 440, 473, 521, 529, 592
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
BstNI CCWGG 2 cut(s) 148, 596
BstPI GGTNACC 2 cut(s) 647, 710
BstSCI CCNGG 2 cut(s) 146, 594
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 3 cut(s) 218, 360, 630
BstV1I GCAGC 3 cut(s) 116, 334, 751
BstX2I RGATCY 6 cut(s) 187, 240, 389, 437, 470, 518
BstXI CCANNNNNNTGG 1 cut(s) 107
BstYI RGATCY 6 cut(s) 187, 240, 389, 437, 470, 518
BsuRI GGCC 1 cut(s) 460
BtsCI GGATG 2 cut(s) 566, 755
BtsIMutI CAGTG 3 cut(s) 360, 414, 724
Cac8I GCNNGC 1 cut(s) 462
CfoI GCGC 1 cut(s) 680
Cfr13I GGNCC 3 cut(s) 411, 458, 492
CsiI ACCWGGT 1 cut(s) 146
Csp6I GTAC 2 cut(s) 144, 381
CviAII CATG 2 cut(s) 124, 361
CviQI GTAC 2 cut(s) 144, 381
DdeI CTNAG 2 cut(s) 703, 743
DpnI GATC 9 cut(s) 189, 242, 391, 399, 439, 472, 520, 528, 591
DpnII GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Ecl136II GAGCTC 2 cut(s) 37, 742
Eco24I GRGCYC 3 cut(s) 39, 316, 744
Eco47I GGWCC 2 cut(s) 411, 492
Eco47III AGCGCT 1 cut(s) 679
Eco53kI GAGCTC 2 cut(s) 37, 742
Eco57I CTGAAG 1 cut(s) 674
Eco88I CYCGRG 1 cut(s) 315
Eco91I GGTNACC 2 cut(s) 647, 710
EcoICRI GAGCTC 2 cut(s) 37, 742
EcoO65I GGTNACC 2 cut(s) 647, 710
EcoRII CCWGG 2 cut(s) 146, 594
EcoT38I GRGCYC 3 cut(s) 39, 316, 744
FaeI CATG 2 cut(s) 127, 364
FaiI YATR 5 cut(s) 125, 198, 264, 270, 362
FatI CATG 2 cut(s) 123, 360
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 105, 348, 765
FokI GGATG 2 cut(s) 553, 742
FriOI GRGCYC 3 cut(s) 39, 316, 744
Fsp4HI GCNGC 3 cut(s) 105, 348, 765
FspBI CTAG 3 cut(s) 369, 498, 772
GlaI GCGC 1 cut(s) 679
GluI GCNGC 3 cut(s) 105, 348, 765
GsuI CTGGAG 4 cut(s) 147, 233, 336, 576
HaeII RGCGCY 1 cut(s) 681
HaeIII GGCC 1 cut(s) 460
HapII CCGG 1 cut(s) 759
HhaI GCGC 1 cut(s) 680
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 2 cut(s) 127, 364
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HinfI GANTC 3 cut(s) 154, 177, 232
HpaII CCGG 1 cut(s) 759
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 3 cut(s) 414, 495, 628
Hpy188I TCNGA 1 cut(s) 667
Hpy188III TCNNGA 6 cut(s) 164, 236, 301, 317, 737, 759
Hpy8I GTNNAC 3 cut(s) 414, 495, 628
HpyAV CCTTC 2 cut(s) 649, 665
HpyCH4III ACNGT 1 cut(s) 719
HpyCH4IV ACGT 3 cut(s) 306, 639, 729
HpyCH4V TGCA 3 cut(s) 25, 574, 628
HpyF3I CTNAG 2 cut(s) 703, 743
HpySE526I ACGT 3 cut(s) 306, 639, 729
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 2 cut(s) 127, 364
HspAI GCGC 1 cut(s) 678
Kpn2I TCCGGA 1 cut(s) 758
Kzo9I GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
LmnI GCTCC 4 cut(s) 34, 42, 355, 761
Lsp1109I GCAGC 3 cut(s) 116, 334, 751
MabI ACCWGGT 1 cut(s) 146
MaeI CTAG 3 cut(s) 369, 498, 772
MaeII ACGT 3 cut(s) 306, 639, 729
MaeIII GTNAC 3 cut(s) 647, 686, 710
MalI GATC 9 cut(s) 189, 242, 391, 399, 439, 472, 520, 528, 591
MboI GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
MboII GAAGA 1 cut(s) 602
MflI RGATCY 6 cut(s) 187, 240, 389, 437, 470, 518
MhlI GDGCHC 6 cut(s) 39, 218, 316, 360, 630, 744
MluCI AATT 3 cut(s) 403, 451, 484
MroI TCCGGA 1 cut(s) 758
MroXI GAANNNNTTC 1 cut(s) 370
MseI TTAA 1 cut(s) 210
MspA1I CMGCKG 3 cut(s) 107, 253, 464
MspI CCGG 1 cut(s) 759
MspR9I CCNGG 2 cut(s) 148, 596
MvaI CCWGG 2 cut(s) 148, 596
NdeII GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
NlaIII CATG 2 cut(s) 127, 364
NlaIV GGNNCC 7 cut(s) 60, 299, 412, 439, 472, 493, 541
PaeR7I CTCGAG 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PdmI GAANNNNTTC 1 cut(s) 370
PfeI GAWTC 3 cut(s) 154, 177, 232
PflMI CCANNNNNTGG 1 cut(s) 467
PkrI GCNGC 3 cut(s) 106, 349, 766
Psp124BI GAGCTC 2 cut(s) 39, 744
Psp1406I AACGTT 1 cut(s) 729
Psp6I CCWGG 2 cut(s) 146, 594
PspEI GGTNACC 2 cut(s) 647, 710
PspGI CCWGG 2 cut(s) 146, 594
PspN4I GGNNCC 7 cut(s) 60, 299, 412, 439, 472, 493, 541
PspPI GGNCC 3 cut(s) 411, 458, 492
PsuI RGATCY 6 cut(s) 187, 240, 389, 437, 470, 518
PvuII CAGCTG 3 cut(s) 107, 253, 464
RsaI GTAC 2 cut(s) 145, 382
RsaNI GTAC 2 cut(s) 144, 381
SacI GAGCTC 2 cut(s) 39, 744
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 105, 348, 765
Sau3AI GATC 9 cut(s) 187, 240, 389, 397, 437, 470, 518, 526, 589
Sau96I GGNCC 3 cut(s) 411, 458, 492
ScrFI CCNGG 2 cut(s) 148, 596
SduI GDGCHC 6 cut(s) 39, 218, 316, 360, 630, 744
SexAI ACCWGGT 1 cut(s) 146
SfcI CTRYAG 1 cut(s) 222
Sfr274I CTCGAG 1 cut(s) 315
SinI GGWCC 2 cut(s) 411, 492
SlaI CTCGAG 1 cut(s) 315
SmlI CTYRAG 3 cut(s) 182, 315, 737
SmoI CTYRAG 3 cut(s) 182, 315, 737
SpeI ACTAGT 2 cut(s) 368, 497
Sse9I AATT 3 cut(s) 403, 451, 484
SsiI CCGC 2 cut(s) 47, 708
SspMI CTAG 3 cut(s) 369, 498, 772
SstI GAGCTC 2 cut(s) 39, 744
StyD4I CCNGG 2 cut(s) 146, 594
TaaI ACNGT 1 cut(s) 719
TaiI ACGT 3 cut(s) 309, 642, 732
TaqI TCGA 2 cut(s) 316, 444
TasI AATT 3 cut(s) 403, 451, 484
TfiI GAWTC 3 cut(s) 154, 177, 232
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 3 cut(s) 360, 421, 724
TseI GCWGC 3 cut(s) 104, 347, 764
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 3 cut(s) 360, 421, 724
Van91I CCANNNNNTGG 1 cut(s) 467
VneI GTGCAC 1 cut(s) 626
VpaK11BI GGWCC 2 cut(s) 411, 492
XhoI CTCGAG 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 370
XspI CTAG 3 cut(s) 369, 498, 772
ZraI GACGTC 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.