Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000466

Physical Location & Seq

Genomic Coordinates Reverse (-)

30908033 .. 30908803

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024016

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGGATGATTATTGTGATTAGTGTGGTAATGGTGCAATGGTTCGGTGTCATAGCCAGTCTTAAGTGGATATGCAAGAATTGGTTCATTATTGTGGTAATTGTGACATGGAACGTAATAGCCAGTGTTGGGTGGATATGGAACAGTAGGTTCAGTTACATGGTTGAAAGCCCAGAGCCAACATCAGAGGATAATCAAGAACTGGTTGACGTCGTTGAAATCCCAGAGCCAATATCAGAGGATAATCAAGAACCGGTTGACGTCGATGTCTCTGCATCTCTTCGTTCATCATCAGCTGAATCATCAGCTCCTAGGTGGAAGCATGATGTGTTTTTGAGCTTCAGGGGTGCAGACACTCGTAAGGGTATTACCTCCTTTTTATACGATCGACTGCAAAACAGAGGAATCAAAACATTCATGGATGACCAGGACCTTCAAGTTGGAGATGTTATTTCTCCCACTCTCCTAACGGCAATTAAAGAATCAAGGTTTGCAGTTATTGTTCTCTCTCAAAACTATGCCTCTTCCACTTGGTGTTTGGAGGAACTTAGAAACATTTGTGAATGCATGGAAGAAGACAACAATAGAATTCTGCCACTTTTTTATTATGTGGATCCTACTGATGTACGACATCAGAAGAGGAGTTTCGGAGATGCTTTCTCTAAGCATGAAAAATTTGGGCGACACAGATCAGAGAAGCTGCAGCAGTGGAGAGATGCTTTAACAAAAGTGGCAAATTTCTCCGGGTGGCATACACTGAATTATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

257

Amino Acids

29.67

Weight (kDa)

5.46

Isoelectric Point (pI)

54.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	107 - 254	4.2e-49	TIR domain
TIR_2	PF13676	110 - 220	1.4e-18	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica	MD12G1125500.v1.1
prunus_persica	Prupe.2G112700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata	RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora	Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa	Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha	Rh1DG060500 Rh6BG033900
rosa_wichuraiana	Rw0G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	765
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	2 cut(s)	213, 264
AclWI	GGATC	2 cut(s)	608, 621
AcsI	RAATTY	3 cut(s)	588, 674, 736
AcuI	CTGAAG	1 cut(s)	325
AcyI	GRCGYC	2 cut(s)	210, 261
AdeI	CACNNNGTG	1 cut(s)	534
AfaI	GTAC	1 cut(s)	627
AfiI	CCNNNNNNNGG	1 cut(s)	129
AflII	CTTAAG	1 cut(s)	62
AgeI	ACCGGT	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	167, 218, 437
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	4 cut(s)	296, 308, 339, 700
AluI	AGCT	4 cut(s)	296, 308, 339, 700
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	608, 621
ApeKI	GCWGC	2 cut(s)	700, 703
ApoI	RAATTY	3 cut(s)	588, 674, 736
AsiGI	ACCGGT	1 cut(s)	253
Asp700I	GAANNNNTTC	1 cut(s)	83
AspA2I	CCTAGG	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	430
AsuC2I	CCSGG	1 cut(s)	745
AvaII	GGWCC	1 cut(s)	430
AvrII	CCTAGG	1 cut(s)	311
BamHI	GGATCC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	687, 715
BceAI	ACGGC	1 cut(s)	486
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	745
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	701
BfrI	CTTAAG	1 cut(s)	62
BisI	GCNGC	2 cut(s)	701, 704
BlnI	CCTAGG	1 cut(s)	311
BlsI	GCNGC	2 cut(s)	702, 705
Bme1390I	CCNGG	2 cut(s)	428, 745
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	2 cut(s)	428, 745
BmsI	GCATC	3 cut(s)	284, 643, 706
BpiI	GAAGAC	1 cut(s)	582
BpuMI	CCSGG	1 cut(s)	745
BsaHI	GRCGYC	2 cut(s)	210, 261
BsaJI	CCNNGG	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	3 cut(s)	57, 123, 207
Bse3DI	GCAATG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	2 cut(s)	12, 427
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMI	GCAATG	1 cut(s)	44
BseNI	ACTGG	3 cut(s)	57, 123, 207
BseRI	GAGGAG	1 cut(s)	655
BseXI	GCAGC	2 cut(s)	687, 715
BsgI	GTGCAG	1 cut(s)	369
Bsh1285I	CGRYCG	1 cut(s)	388
BshTI	ACCGGT	1 cut(s)	253
BsiEI	CGRYCG	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	254, 744
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	274
BsmI	GAATGC	1 cut(s)	569
Bsp143I	GATC	3 cut(s)	385, 613, 689
BspLI	GGNNCC	1 cut(s)	615
BspMAI	CTGCAG	1 cut(s)	705
BspPI	GGATC	2 cut(s)	608, 621
BspTI	CTTAAG	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	3 cut(s)	57, 123, 207
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	3 cut(s)	385, 613, 689
BssNI	GRCGYC	2 cut(s)	210, 261
BssT1I	CCWWGG	1 cut(s)	311
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	3 cut(s)	285, 529, 632
BstACI	GRCGYC	2 cut(s)	210, 261
BstAFI	CTTAAG	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	548, 663
BstF5I	GGATG	2 cut(s)	12, 427
BstKTI	GATC	3 cut(s)	388, 616, 692
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	3 cut(s)	385, 613, 689
BstMCI	CGRYCG	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	2 cut(s)	426, 743
BstSFI	CTRYAG	1 cut(s)	701
BstV1I	GCAGC	2 cut(s)	687, 715
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BtsCI	GGATG	2 cut(s)	12, 427
BtsI	GCAGTG	1 cut(s)	713
BtsIMutI	CAGTG	3 cut(s)	130, 713, 755
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	626
CspAI	ACCGGT	1 cut(s)	253
CviAII	CATG	6 cut(s)	108, 160, 323, 418, 568, 668
CviJI	RGCY	9 cut(s)	56, 122, 171, 178, 229, 296, 308, 339, 700
CviKI_1	RGCY	9 cut(s)	56, 122, 171, 178, 229, 296, 308, 339, 700
CviQI	GTAC	1 cut(s)	626
DdeI	CTNAG	2 cut(s)	548, 663
DpnI	GATC	3 cut(s)	387, 615, 691
DpnII	GATC	3 cut(s)	385, 613, 689
DraIII	CACNNNGTG	1 cut(s)	534
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	3 cut(s)	285, 529, 632
EarI	CTCTTC	3 cut(s)	285, 529, 632
Eco130I	CCWWGG	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	569
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	6 cut(s)	111, 163, 326, 421, 571, 671
FatI	CATG	6 cut(s)	107, 159, 322, 417, 567, 667
Fnu4HI	GCNGC	2 cut(s)	701, 704
FokI	GGATG	2 cut(s)	19, 434
Fsp4HI	GCNGC	2 cut(s)	701, 704
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	701, 704
HapII	CCGG	2 cut(s)	254, 744
Hin1I	GRCGYC	2 cut(s)	210, 261
Hin1II	CATG	6 cut(s)	111, 163, 326, 421, 571, 671
HincII	GTYRAC	2 cut(s)	208, 259
HindII	GTYRAC	2 cut(s)	208, 259
HinfI	GANTC	3 cut(s)	299, 405, 482
HpaII	CCGG	2 cut(s)	254, 744
Hpy166II	GTNNAC	2 cut(s)	208, 259
Hpy188I	TCNGA	5 cut(s)	187, 238, 636, 650, 694
Hpy188III	TCNNGA	2 cut(s)	197, 248
Hpy8I	GTNNAC	2 cut(s)	208, 259
Hpy99I	CGWCG	2 cut(s)	215, 266
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	3 cut(s)	114, 210, 261
HpyCH4V	TGCA	8 cut(s)	37, 75, 275, 350, 394, 494, 567, 703
HpyF3I	CTNAG	2 cut(s)	548, 663
HpySE526I	ACGT	3 cut(s)	114, 210, 261
Hsp92I	GRCGYC	2 cut(s)	210, 261
Hsp92II	CATG	6 cut(s)	111, 163, 326, 421, 571, 671
Kzo9I	GATC	3 cut(s)	385, 613, 689
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	2 cut(s)	687, 715
LweI	GCATC	3 cut(s)	284, 643, 706
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	3 cut(s)	114, 210, 261
MaeIII	GTNAC	2 cut(s)	103, 155
MalI	GATC	3 cut(s)	387, 615, 691
MboI	GATC	3 cut(s)	385, 613, 689
MboII	GAAGA	5 cut(s)	272, 516, 584, 587, 649
MflI	RGATCY	1 cut(s)	613
MluCI	AATT	7 cut(s)	79, 99, 474, 588, 674, 736, 760
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	7 cut(s)	181, 232, 382, 395, 532, 535, 633
Mph1103I	ATGCAT	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	3 cut(s)	63, 477, 722
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	62
MspI	CCGG	2 cut(s)	254, 744
MspR9I	CCNGG	2 cut(s)	428, 745
Mva1269I	GAATGC	1 cut(s)	569
MvaI	CCWGG	1 cut(s)	428
NciI	CCSGG	1 cut(s)	745
NdeII	GATC	3 cut(s)	385, 613, 689
NlaIII	CATG	6 cut(s)	111, 163, 326, 421, 571, 671
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	1 cut(s)	103
NsiI	ATGCAT	1 cut(s)	569
PctI	GAATGC	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	299, 405, 482
PinAI	ACCGGT	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	702, 705
Ple19I	CGATCG	1 cut(s)	388
PpuMI	RGGWCCY	1 cut(s)	430
PsiI	TTATAA	1 cut(s)	765
Psp5II	RGGWCCY	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	1 cut(s)	430
PspPPI	RGGWCCY	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	705
PsuI	RGATCY	1 cut(s)	613
PvuI	CGATCG	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	627
RsaNI	GTAC	1 cut(s)	626
RseI	CAYNNNNRTG	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	63, 477, 722
SatI	GCNGC	2 cut(s)	701, 704
Sau3AI	GATC	3 cut(s)	385, 613, 689
Sau96I	GGNCC	1 cut(s)	430
ScrFI	CCNGG	2 cut(s)	428, 745
SfaNI	GCATC	3 cut(s)	284, 643, 706
SfcI	CTRYAG	1 cut(s)	701
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
Sse9I	AATT	7 cut(s)	79, 99, 474, 588, 674, 736, 760
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	426, 743
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	3 cut(s)	117, 213, 264
TaqI	TCGA	2 cut(s)	264, 388
TasI	AATT	7 cut(s)	79, 99, 474, 588, 674, 736, 760
TfiI	GAWTC	3 cut(s)	299, 405, 482
Tru1I	TTAA	3 cut(s)	63, 477, 722
Tru9I	TTAA	3 cut(s)	63, 477, 722
TscAI	CASTG	3 cut(s)	130, 713, 762
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	700, 703
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	4 cut(s)	76, 276, 406, 684
TspRI	CASTG	3 cut(s)	130, 713, 762
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	3 cut(s)	588, 674, 736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmaJI	CCTAGG	1 cut(s)	311
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	312
ZraI	GACGTC	2 cut(s)	211, 262
Zsp2I	ATGCAT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.