RchiOBHm_Chr1g0323391

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000466
Physical Location & Seq
Forward (+)
10878963 .. 10879810
848 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55330

Sequence Viewer

Length: 573 bp
ATGAATGTGAGGCCCCTTTTAGGTGGAAAGTGGAATCAAGTCCGGGCATTGACTCTGATTCAATTCCGATTAGGAGATCGATGGCGTCAACCTCTTCTCGTCGTCAATGGAAATACGATGTGTTTCTCAAATACGATGTATTCTGCACTAAATCAGAAAGGAATTCTCACCTTTATGGATGACCCAGAGCTTGAGAAAGGAAAATCCATTAGGCCTGAACTTTTAGCTGCAACTGAGGAGTCTAGGTCTGCGATTGTCATTCTCTCACCCACCTATGCTGATTCATCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCATGAAAGATATGGGCCAACAAGTCCTCCCCGTCTTCTACGGCGTGGATCCTTCTGATGTGCGGCACCAAAGGGGAAGGTTTCAGCTCAAAAGGGAAACCCAAGTAGATGTGGAAGTAAGGGAACATGAAGAAGTTTATGGGAAGAATGAGGACAGACTAAATGCGTGGAGAGCTGCTTTGACTGAGGTCGCCAATCTTTCTGGCTGGGATTCCTGGAATTATTCACCTGAATCAACTTTAATTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

190

Amino Acids

21.81

Weight (kDa)

5.33

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 41 - 190 1.3e-40 TIR domain
TIR_2 PF13676 46 - 134 2.5e-11 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 387
AciI CCGC 1 cut(s) 385
AclWI GGATC 2 cut(s) 365, 378
AcsI RAATTY 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 85
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 2 cut(s) 62, 320
AjnI CCWGG 1 cut(s) 536
AluBI AGCT 4 cut(s) 190, 227, 409, 497
AluI AGCT 4 cut(s) 190, 227, 409, 497
AlwI GGATC 2 cut(s) 365, 378
AoxI GGCC 3 cut(s) 11, 212, 337
ApeKI GCWGC 2 cut(s) 227, 497
ApoI RAATTY 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 12, 337
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 3 cut(s) 160, 258, 540
BamHI GGATCC 1 cut(s) 370
BanI GGYRCC 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 349
BbvI GCAGC 2 cut(s) 214, 484
BccI CCATC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 379
BciT130I CCWGG 1 cut(s) 538
BcnI CCSGG 1 cut(s) 44
BfaI CTAG 1 cut(s) 243
BisI GCNGC 3 cut(s) 228, 386, 498
BlsI GCNGC 3 cut(s) 229, 387, 499
Bme1390I CCNGG 2 cut(s) 44, 538
BmgT120I GGNCC 2 cut(s) 12, 337
BmiI GGNNCC 3 cut(s) 14, 372, 389
BmrFI CCNGG 2 cut(s) 44, 538
BoxI GACNNNNGTC 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 85
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 333, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 538
BseCI ATCGAT 1 cut(s) 79
BseGI GGATG 2 cut(s) 184, 304
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 225, 498
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 214, 484
BseYI CCCAGC 1 cut(s) 528
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 3 cut(s) 13, 214, 339
BshNI GGYRCC 1 cut(s) 387
BshVI ATCGAT 1 cut(s) 79
BsiSI CCGG 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 20
BsnI GGCC 3 cut(s) 13, 214, 339
Bsp143I GATC 2 cut(s) 76, 370
BspACI CCGC 1 cut(s) 385
BspANI GGCC 3 cut(s) 13, 214, 339
BspCNI CTCAG 2 cut(s) 226, 499
BspDI ATCGAT 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 14, 372, 389
BspPI GGATC 2 cut(s) 365, 378
BspT107I GGYRCC 1 cut(s) 387
BssMI GATC 2 cut(s) 76, 370
BssNI GRCGYC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 538
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 234, 507
BstF5I GGATG 2 cut(s) 184, 304
BstKTI GATC 2 cut(s) 79, 373
BstMBI GATC 2 cut(s) 76, 370
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 538
BstPAI GACNNNNGTC 1 cut(s) 509
BstSCI CCNGG 2 cut(s) 42, 536
BstV1I GCAGC 2 cut(s) 214, 484
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 79
BsuRI GGCC 3 cut(s) 13, 214, 339
BsuTUI ATCGAT 1 cut(s) 79
BtsCI GGATG 2 cut(s) 184, 304
Cfr13I GGNCC 2 cut(s) 12, 337
ClaI ATCGAT 1 cut(s) 79
CseI GACGC 1 cut(s) 74
CviAII CATG 3 cut(s) 288, 325, 449
CviJI RGCY 8 cut(s) 13, 190, 214, 227, 339, 409, 497, 528
CviKI_1 RGCY 8 cut(s) 13, 190, 214, 227, 339, 409, 497, 528
DdeI CTNAG 2 cut(s) 234, 507
DpnI GATC 2 cut(s) 78, 372
DpnII GATC 2 cut(s) 76, 370
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco147I AGGCCT 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 536
EcoT22I ATGCAT 1 cut(s) 326
FaeI CATG 3 cut(s) 291, 328, 452
FaiI YATR 7 cut(s) 176, 276, 289, 326, 335, 450, 462
FatI CATG 3 cut(s) 287, 324, 448
Fnu4HI GCNGC 3 cut(s) 228, 386, 498
FokI GGATG 2 cut(s) 191, 311
Fsp4HI GCNGC 3 cut(s) 228, 386, 498
FspBI CTAG 1 cut(s) 243
GluI GCNGC 3 cut(s) 228, 386, 498
GsaI CCCAGC 1 cut(s) 532
HaeIII GGCC 3 cut(s) 13, 214, 339
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 85
Hin1II CATG 3 cut(s) 291, 328, 452
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HinfI GANTC 7 cut(s) 34, 52, 58, 239, 281, 533, 554
HpaII CCGG 1 cut(s) 43
HphI GGTGA 3 cut(s) 160, 258, 540
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 4 cut(s) 57, 68, 156, 379
Hpy188III TCNNGA 1 cut(s) 310
Hpy8I GTNNAC 1 cut(s) 89
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 2 cut(s) 384, 393
HpyCH4V TGCA 3 cut(s) 146, 230, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 2 cut(s) 234, 507
Hsp92I GRCGYC 1 cut(s) 85
Hsp92II CATG 3 cut(s) 291, 328, 452
Kzo9I GATC 2 cut(s) 76, 370
LpnPI CCDG 8 cut(s) 56, 198, 228, 510, 514, 523, 550, 564
Lsp1109I GCAGC 2 cut(s) 214, 484
MaeI CTAG 1 cut(s) 243
MalI GATC 2 cut(s) 78, 372
MboI GATC 2 cut(s) 76, 370
MboII GAAGA 4 cut(s) 86, 349, 464, 478
MflI RGATCY 1 cut(s) 370
MluCI AATT 4 cut(s) 62, 162, 541, 564
MlyI GAGTC 2 cut(s) 46, 248
MnlI CCTC 6 cut(s) 3, 102, 229, 359, 466, 502
Mph1103I ATGCAT 1 cut(s) 326
MseI TTAA 2 cut(s) 563, 571
MslI CAYNNNNRTG 2 cut(s) 173, 289
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 44, 538
MvaI CCWGG 1 cut(s) 538
MwoI GCNNNNNNNGC 1 cut(s) 494
NciI CCSGG 1 cut(s) 44
NdeII GATC 2 cut(s) 76, 370
NlaIII CATG 3 cut(s) 291, 328, 452
NlaIV GGNNCC 3 cut(s) 14, 372, 389
NsiI ATGCAT 1 cut(s) 326
PceI AGGCCT 1 cut(s) 214
PfeI GAWTC 5 cut(s) 34, 58, 281, 533, 554
PfoI TCCNGGA 1 cut(s) 536
PkrI GCNGC 3 cut(s) 229, 387, 499
PleI GAGTC 2 cut(s) 46, 247
PpsI GAGTC 2 cut(s) 46, 247
PshAI GACNNNNGTC 1 cut(s) 509
Psp6I CCWGG 1 cut(s) 536
PspFI CCCAGC 1 cut(s) 528
PspGI CCWGG 1 cut(s) 536
PspN4I GGNNCC 3 cut(s) 14, 372, 389
PspPI GGNCC 2 cut(s) 12, 337
PsuI RGATCY 1 cut(s) 370
RseI CAYNNNNRTG 2 cut(s) 173, 289
SaqAI TTAA 2 cut(s) 563, 571
SatI GCNGC 3 cut(s) 228, 386, 498
Sau3AI GATC 2 cut(s) 76, 370
Sau96I GGNCC 2 cut(s) 12, 337
SchI GAGTC 2 cut(s) 46, 248
ScrFI CCNGG 2 cut(s) 44, 538
SmiMI CAYNNNNRTG 2 cut(s) 173, 289
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 4 cut(s) 62, 162, 541, 564
SseBI AGGCCT 1 cut(s) 214
SsiI CCGC 1 cut(s) 385
SspMI CTAG 1 cut(s) 243
StuI AGGCCT 1 cut(s) 214
StyD4I CCNGG 2 cut(s) 42, 536
TaqI TCGA 1 cut(s) 79
TasI AATT 4 cut(s) 62, 162, 541, 564
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 5 cut(s) 34, 58, 281, 533, 554
Tru1I TTAA 2 cut(s) 563, 571
Tru9I TTAA 2 cut(s) 563, 571
TseI GCWGC 2 cut(s) 227, 497
TspDTI ATGAA 5 cut(s) 17, 273, 315, 341, 465
XapI RAATTY 1 cut(s) 162
XspI CTAG 1 cut(s) 243
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.