Rmu_co8162460.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8162460.1
OG0000466
Physical Location & Seq
Reverse (-)
209 .. 622
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8162460.1_g000001.1.cds

Sequence Viewer

Length: 414 bp
ctgtatactgcattaaagcagagaggaattctcacctttcgggatgacccagagcttgagaaaggaaaatccattagacctgaacttttagctgcaattgaggagtctagatctgcgattgtcattctctcggagaattatgcttgttcgtcatggtgcttggatgaactcgtcaaaattattcaatgcatgaaagatatgggccaacaagtcttccccgtcttctacgtcgtggatccttctgatgtgcggcaccaaacgggaagttttgagctcaaaggggaaccccaagtacaagtaagggaacatgaagaagtttatgggaagcctagtgaggacagactaaatgcctggagagctgctttgactgaggtcgccaatctttctggctggcatgccaagtatactctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

137

Amino Acids

15.63

Weight (kDa)

5.23

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccI GTMKAC 2 cut(s) 5, 404
AciI CCGC 1 cut(s) 250
AclWI GGATC 2 cut(s) 230, 243
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 1 cut(s) 294
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 350
AluBI AGCT 4 cut(s) 55, 92, 274, 359
AluI AGCT 4 cut(s) 55, 92, 274, 359
Alw21I GWGCWC 1 cut(s) 276
AlwI GGATC 2 cut(s) 230, 243
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 2 cut(s) 92, 359
ApoI RAATTY 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 25
BamHI GGATCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 2 cut(s) 205, 214
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 79, 346
BciT130I CCWGG 1 cut(s) 352
BfaI CTAG 2 cut(s) 108, 330
BglII AGATCT 1 cut(s) 110
BisI GCNGC 3 cut(s) 93, 251, 360
BlsI GCNGC 3 cut(s) 94, 252, 361
Bme1390I CCNGG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 3 cut(s) 237, 254, 285
BmrFI CCNGG 1 cut(s) 352
BoxI GACNNNNGTC 1 cut(s) 371
BpiI GAAGAC 2 cut(s) 205, 214
BplI GAGNNNNNCTC 2 cut(s) 15, 47
BpmI CTGGAG 1 cut(s) 373
BpuEI CTTGAG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 352
BseGI GGATG 2 cut(s) 49, 169
BseMII CTCAG 1 cut(s) 360
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 79, 346
BshFI GGCC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 276
BsnI GGCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 2 cut(s) 110, 235
BspACI CCGC 1 cut(s) 250
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 3 cut(s) 237, 254, 285
BspPI GGATC 2 cut(s) 230, 243
BspT107I GGYRCC 1 cut(s) 252
BssMI GATC 2 cut(s) 110, 235
BssNAI GTATAC 2 cut(s) 6, 405
Bst1107I GTATAC 2 cut(s) 6, 405
Bst2UI CCWGG 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 392, 396
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 49, 169
BstKTI GATC 2 cut(s) 113, 238
BstMBI GATC 2 cut(s) 110, 235
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 1 cut(s) 352
BstNSI RCATGY 1 cut(s) 398
BstPAI GACNNNNGTC 1 cut(s) 371
BstSCI CCNGG 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 79, 346
BstV2I GAAGAC 2 cut(s) 205, 214
BstX2I RGATCY 2 cut(s) 110, 235
BstYI RGATCY 2 cut(s) 110, 235
BstZ17I GTATAC 2 cut(s) 6, 405
BsuRI GGCC 1 cut(s) 204
BtsCI GGATG 2 cut(s) 49, 169
Cac8I GCNNGC 2 cut(s) 392, 396
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 293
CviAII CATG 4 cut(s) 153, 190, 308, 395
CviJI RGCY 7 cut(s) 55, 92, 204, 274, 328, 359, 390
CviKI_1 RGCY 7 cut(s) 55, 92, 204, 274, 328, 359, 390
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 369
DpnI GATC 2 cut(s) 112, 237
DpnII GATC 2 cut(s) 110, 235
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 350
EcoT22I ATGCAT 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 276
FaeI CATG 4 cut(s) 156, 193, 311, 398
FaiI YATR 9 cut(s) 6, 141, 154, 191, 200, 309, 321, 396, 405
FatI CATG 4 cut(s) 152, 189, 307, 394
FblI GTMKAC 2 cut(s) 5, 404
Fnu4HI GCNGC 3 cut(s) 93, 251, 360
FokI GGATG 2 cut(s) 56, 176
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 93, 251, 360
FspBI CTAG 2 cut(s) 108, 330
GluI GCNGC 3 cut(s) 93, 251, 360
GsuI CTGGAG 1 cut(s) 373
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 4 cut(s) 156, 193, 311, 398
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 6, 405
Hpy188I TCNGA 2 cut(s) 133, 244
Hpy188III TCNNGA 2 cut(s) 41, 108
Hpy8I GTNNAC 2 cut(s) 6, 405
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 3 cut(s) 11, 95, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 4 cut(s) 156, 193, 311, 398
Kzo9I GATC 2 cut(s) 110, 235
LpnPI CCDG 6 cut(s) 63, 93, 337, 364, 372, 376
Lsp1109I GCAGC 2 cut(s) 79, 346
MaeI CTAG 2 cut(s) 108, 330
MaeII ACGT 1 cut(s) 228
MalI GATC 2 cut(s) 112, 237
MboI GATC 2 cut(s) 110, 235
MboII GAAGA 3 cut(s) 205, 214, 323
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 2 cut(s) 110, 235
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 4 cut(s) 27, 96, 136, 177
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 4 cut(s) 17, 94, 328, 364
Mph1103I ATGCAT 1 cut(s) 191
MseI TTAA 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 352
MunI CAATTG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeII GATC 2 cut(s) 110, 235
NlaIII CATG 4 cut(s) 156, 193, 311, 398
NlaIV GGNNCC 3 cut(s) 237, 254, 285
NsiI ATGCAT 1 cut(s) 191
NspI RCATGY 1 cut(s) 398
PaeI GCATGC 1 cut(s) 398
PkrI GCNGC 3 cut(s) 94, 252, 361
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PshAI GACNNNNGTC 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 350
PspGI CCWGG 1 cut(s) 350
PspN4I GGNNCC 3 cut(s) 237, 254, 285
PspPI GGNCC 1 cut(s) 202
PsrI GAACNNNNNNTAC 2 cut(s) 276, 308
PsuI RGATCY 2 cut(s) 110, 235
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 3 cut(s) 93, 251, 360
Sau3AI GATC 2 cut(s) 110, 235
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 1 cut(s) 276
SetI ASST 8 cut(s) 38, 57, 82, 94, 231, 276, 361, 375
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
SphI GCATGC 1 cut(s) 398
Sse9I AATT 4 cut(s) 27, 96, 136, 177
SsiI CCGC 1 cut(s) 250
SspMI CTAG 2 cut(s) 108, 330
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 350
TaiI ACGT 1 cut(s) 231
TasI AATT 4 cut(s) 27, 96, 136, 177
TatI WGTACW 1 cut(s) 292
TauI GCSGC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 2 cut(s) 92, 359
TspDTI ATGAA 3 cut(s) 180, 206, 324
XapI RAATTY 1 cut(s) 27
XbaI TCTAGA 1 cut(s) 107
XceI RCATGY 1 cut(s) 398
XmiI GTMKAC 2 cut(s) 5, 404
XspI CTAG 2 cut(s) 108, 330
Zsp2I ATGCAT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.