Rmu_sc0000749.1_g000016

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000749.1
OG0000466
Physical Location & Seq
Forward (+)
58647 .. 59156
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000749.1_g000016.1.cds

Sequence Viewer

Length: 510 bp
atggcgtcaacctcttctcgtcgtcaatggaaatacgatgtgttcctaaatttcaggggggaagatacgcgccatcgttatatccattatctgtatcatgcactaactcagagaggaattctcacctttatggatgaccgagagcttgagaaaggaaaatccattaggcctgaacttttaagtgcaattgaggagtctagatctgcgattgtcattctctcacggaactatgcttcttcgtcatggtgcttggatgaactcgtcaagattattcaatgcatgaaagagatgggccaacaagtcctccccgtcttcttctacggcgtggatccttctgatgtgcggcaccaaacgggaaattttgagctcaaagtaagggaactccaagtagaagtaagggaacatgaagaagtttatgggaagaatactgagggcagactaaatgcctggagagctgctttgactgaggtcgccagtctttctggctgggattacaagaagtattcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

169

Amino Acids

19.85

Weight (kDa)

6.97

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 345
AccII CGCG 1 cut(s) 70
AciI CCGC 1 cut(s) 343
AclWI GGATC 2 cut(s) 323, 336
AcsI RAATTY 3 cut(s) 49, 117, 358
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 446
AluBI AGCT 3 cut(s) 145, 367, 455
AluI AGCT 3 cut(s) 145, 367, 455
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 2 cut(s) 323, 336
AoxI GGCC 2 cut(s) 167, 292
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 3 cut(s) 49, 117, 358
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 1 cut(s) 115
BamHI GGATCC 1 cut(s) 328
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 442
BccI CCATC 2 cut(s) 81, 283
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 448
BfaI CTAG 1 cut(s) 198
BglII AGATCT 1 cut(s) 200
BisI GCNGC 2 cut(s) 344, 456
BlsI GCNGC 2 cut(s) 345, 457
Bme1390I CCNGG 1 cut(s) 448
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 2 cut(s) 330, 347
BmrFI CCNGG 1 cut(s) 448
BoxI GACNNNNGTC 1 cut(s) 467
BpiI GAAGAC 1 cut(s) 304
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bse1I ACTGG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 448
BseGI GGATG 2 cut(s) 139, 259
BseMII CTCAG 3 cut(s) 122, 420, 456
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 442
BseYI CCCAGC 1 cut(s) 486
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 2 cut(s) 169, 294
BshNI GGYRCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 369
BsnI GGCC 2 cut(s) 169, 294
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 2 cut(s) 200, 328
BspACI CCGC 1 cut(s) 343
BspANI GGCC 2 cut(s) 169, 294
BspCNI CTCAG 3 cut(s) 121, 421, 457
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 330, 347
BspPI GGATC 2 cut(s) 323, 336
BspT107I GGYRCC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 474
BssMI GATC 2 cut(s) 200, 328
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 448
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 3 cut(s) 108, 429, 465
BstF5I GGATG 2 cut(s) 139, 259
BstFNI CGCG 1 cut(s) 70
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 2 cut(s) 203, 331
BstMBI GATC 2 cut(s) 200, 328
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstNI CCWGG 1 cut(s) 448
BstPAI GACNNNNGTC 1 cut(s) 467
BstSCI CCNGG 1 cut(s) 446
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 200, 328
BstYI RGATCY 2 cut(s) 200, 328
BsuRI GGCC 2 cut(s) 169, 294
BtsCI GGATG 2 cut(s) 139, 259
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 292
CviAII CATG 4 cut(s) 98, 243, 280, 404
CviJI RGCY 6 cut(s) 145, 169, 294, 367, 455, 486
CviKI_1 RGCY 6 cut(s) 145, 169, 294, 367, 455, 486
DdeI CTNAG 3 cut(s) 108, 429, 465
DpnI GATC 2 cut(s) 202, 330
DpnII GATC 2 cut(s) 200, 328
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 367
Eco147I AGGCCT 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 367
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 446
EcoT22I ATGCAT 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 4 cut(s) 101, 246, 283, 407
FaiI YATR 8 cut(s) 81, 99, 131, 231, 244, 281, 405, 417
FatI CATG 4 cut(s) 97, 242, 279, 403
Fnu4HI GCNGC 2 cut(s) 344, 456
FokI GGATG 2 cut(s) 146, 266
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 344, 456
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 71
GluI GCNGC 2 cut(s) 344, 456
GsaI CCCAGC 1 cut(s) 490
GsuI CTGGAG 1 cut(s) 469
HaeIII GGCC 2 cut(s) 169, 294
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 101, 246, 283, 407
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 194
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 111, 337
Hpy188III TCNNGA 2 cut(s) 198, 265
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 101, 185, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpyF3I CTNAG 3 cut(s) 108, 429, 465
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 101, 246, 283, 407
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 200, 328
LpnPI CCDG 7 cut(s) 40, 183, 433, 460, 468, 472, 487
Lsp1109I GCAGC 1 cut(s) 442
MaeI CTAG 1 cut(s) 198
MalI GATC 2 cut(s) 202, 330
MboI GATC 2 cut(s) 200, 328
MboII GAAGA 7 cut(s) 6, 74, 228, 304, 307, 419, 433
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 2 cut(s) 200, 328
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 4 cut(s) 49, 117, 186, 358
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 6 cut(s) 22, 107, 184, 314, 424, 460
Mph1103I ATGCAT 1 cut(s) 281
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 448
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 448
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 452
NdeII GATC 2 cut(s) 200, 328
NlaIII CATG 4 cut(s) 101, 246, 283, 407
NlaIV GGNNCC 2 cut(s) 330, 347
NsiI ATGCAT 1 cut(s) 281
PceI AGGCCT 1 cut(s) 169
PkrI GCNGC 2 cut(s) 345, 457
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PshAI GACNNNNGTC 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 446
PspFI CCCAGC 1 cut(s) 486
PspGI CCWGG 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 330, 347
PspPI GGNCC 1 cut(s) 292
PsuI RGATCY 2 cut(s) 200, 328
RseI CAYNNNNRTG 1 cut(s) 128
SacI GAGCTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 2 cut(s) 344, 456
Sau3AI GATC 2 cut(s) 200, 328
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 448
SduI GDGCHC 1 cut(s) 369
SetI ASST 6 cut(s) 14, 128, 147, 369, 457, 471
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 4 cut(s) 49, 117, 186, 358
SseBI AGGCCT 1 cut(s) 169
SsiI CCGC 1 cut(s) 343
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 369
StuI AGGCCT 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 446
TaqII GACCGA 1 cut(s) 153
TasI AATT 4 cut(s) 49, 117, 186, 358
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 1 cut(s) 455
TspDTI ATGAA 3 cut(s) 270, 296, 420
TspGWI ACGGA 1 cut(s) 238
XapI RAATTY 3 cut(s) 49, 117, 358
XbaI TCTAGA 1 cut(s) 197
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.