Rmu_sc0002075.1_g000005

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002075.1
OG0000466
Physical Location & Seq
Reverse (-)
26471 .. 27692
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002075.1_g000005.1.cds

Sequence Viewer

Length: 1122 bp
atgaggatgattattgtgattagtgcggtaacggtgcaatggttcggtgtcatagccagtctcaagtggatatggaagaattggttcattattgtggtgattgtgacatggaacgtaatagccactcttgggtggatatggaagcataggttcagttacatggtggaaaccccagagccaatatcagaggataatcaagaaccggttgacgttgttgaaaccccagagccaatagcagagggtaatcaagaaccggttgacgtcgttgaaaccccagagccaatatcagagggtaatcaagaaccggttgacgttgttgaaaccccagagccaatagcagagggtaatcaagaaccggttgacgtcgatgcctctacatcatcagctcctaggtggaagcacgatgtgtttttgagtttcaggggtgtagacactcgcaaaggtattgcatccgaaatatactatcgactgcaaaacaggaaaggaattaaaattttcatggatgacccagaccttcaagtagggaatgttatttctcccactctcctaacagcaattaaagaatcaaggtttgcaattattgttctctctccaaactatgcctcttccacttggtgtttggaggaacttagatacatttgtgaatgcatggaagaagacaaaaatagaattctgccacttttttattatgtggatcctactgatgtacgacatcagaagaggagtttcggagatgctttctctaagcatgaaaattctgggcgatacgaattagaggagatgcggcagtggagagctgctttaaaaaaagtggcaaatttctctggatgggacacaaagaattataaaactgaaagagcacttttggatgccgttgaggaaactgtgtgtgataaattacgagctactgaacttgagcttaaaatgtccattggaggttttcctgtgatgaggttggtgctctcctcgtccacagcgcttgaagaagaagtcaggtcacgggactaccccaacgactgcaccccgcggtgctggcacgcctgcgcaatcactcgctcaaaagagactgtttgcacaccagctggttttggagccaaacagtatcccaaaaccccgacttga

Protein Analysis

373

Amino Acids

42.63

Weight (kDa)

5.03

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 846
AatII GACGTC 2 cut(s) 264, 366
Acc16I TGCGCA 1 cut(s) 1045
AccI GTMKAC 1 cut(s) 429
AccII CGCG 1 cut(s) 1027
AciI CCGC 4 cut(s) 26, 784, 1025, 1027
AclWI GGATC 2 cut(s) 689, 702
AcsI RAATTY 4 cut(s) 492, 669, 754, 817
AcyI GRCGYC 2 cut(s) 261, 363
AdeI CACNNNGTG 2 cut(s) 406, 615
AfaI GTAC 1 cut(s) 708
AfeI AGCGCT 1 cut(s) 978
AfiI CCNNNNNNNGG 1 cut(s) 129
AgeI ACCGGT 4 cut(s) 202, 253, 304, 355
AgsI TTSAA 5 cut(s) 218, 269, 320, 518, 983
AluBI AGCT 5 cut(s) 386, 797, 905, 919, 1082
AluI AGCT 5 cut(s) 386, 797, 905, 919, 1082
Alw21I GWGCWC 2 cut(s) 862, 963
Alw26I GTCTC 2 cut(s) 65, 1058
AlwI GGATC 2 cut(s) 689, 702
Aor51HI AGCGCT 1 cut(s) 978
ApeKI GCWGC 1 cut(s) 797
ApoI RAATTY 4 cut(s) 492, 669, 754, 817
AsiGI ACCGGT 4 cut(s) 202, 253, 304, 355
Asp700I GAANNNNTTC 1 cut(s) 83
AspA2I CCTAGG 1 cut(s) 389
AspLEI GCGC 2 cut(s) 979, 1046
AsuHPI GGTGA 1 cut(s) 109
AvrII CCTAGG 1 cut(s) 389
BaeI ACNNNNGTAYC 2 cut(s) 625, 658
BamHI GGATCC 1 cut(s) 694
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 2 cut(s) 862, 963
BbvI GCAGC 1 cut(s) 784
BccI CCATC 1 cut(s) 822
BceAI ACGGC 1 cut(s) 857
BciVI GTATCC 1 cut(s) 1113
BcoDI GTCTC 2 cut(s) 65, 1058
BfaI CTAG 1 cut(s) 390
BfoI RGCGCY 1 cut(s) 980
BfuI GTATCC 1 cut(s) 1113
BisI GCNGC 2 cut(s) 785, 798
BlnI CCTAGG 1 cut(s) 389
BlsI GCNGC 2 cut(s) 786, 799
BmiI GGNNCC 2 cut(s) 696, 1093
BmsI GCATC 5 cut(s) 358, 458, 724, 771, 859
BpiI GAAGAC 1 cut(s) 663
BpuEI CTTGAG 2 cut(s) 47, 935
BsaHI GRCGYC 2 cut(s) 261, 363
BsaJI CCNNGG 2 cut(s) 389, 1025
BsaWI WCCGGW 4 cut(s) 202, 253, 304, 355
Bsc4I CCNNNNNNNGG 1 cut(s) 129
Bse118I RCCGGY 4 cut(s) 202, 253, 304, 355
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 389, 1025
BseGI GGATG 5 cut(s) 12, 449, 508, 833, 874
BseLI CCNNNNNNNGG 1 cut(s) 129
BseMI GCAATG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 3 cut(s) 736, 791, 955
BseXI GCAGC 1 cut(s) 784
BsgI GTGCAG 1 cut(s) 1003
Bsh1236I CGCG 1 cut(s) 1027
BshTI ACCGGT 4 cut(s) 202, 253, 304, 355
BsiHKAI GWGCWC 2 cut(s) 862, 963
BsiSI CCGG 4 cut(s) 203, 254, 305, 356
BslFI GGGAC 2 cut(s) 845, 1016
BslI CCNNNNNNNGG 1 cut(s) 129
BsmAI GTCTC 2 cut(s) 65, 1058
BsmFI GGGAC 2 cut(s) 845, 1016
BsmI GAATGC 1 cut(s) 650
Bsp1286I GDGCHC 2 cut(s) 862, 963
Bsp143I GATC 1 cut(s) 694
BspACI CCGC 4 cut(s) 26, 784, 1025, 1027
BspFNI CGCG 1 cut(s) 1027
BspLI GGNNCC 2 cut(s) 696, 1093
BspPI GGATC 2 cut(s) 689, 702
BsrDI GCAATG 1 cut(s) 44
BsrFI RCCGGY 4 cut(s) 202, 253, 304, 355
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 4 cut(s) 202, 253, 304, 355
BssECI CCNNGG 2 cut(s) 389, 1025
BssMI GATC 1 cut(s) 694
BssNI GRCGYC 2 cut(s) 261, 363
BssT1I CCWWGG 1 cut(s) 389
Bst4CI ACNGT 4 cut(s) 34, 886, 1069, 1101
Bst6I CTCTTC 2 cut(s) 610, 713
BstACI GRCGYC 2 cut(s) 261, 363
BstC8I GCNNGC 3 cut(s) 1034, 1038, 1042
BstDEI CTNAG 2 cut(s) 629, 744
BstDSI CCRYGG 1 cut(s) 1025
BstF5I GGATG 5 cut(s) 12, 449, 508, 833, 874
BstFNI CGCG 1 cut(s) 1027
BstH2I RGCGCY 1 cut(s) 980
BstHHI GCGC 2 cut(s) 979, 1046
BstKTI GATC 1 cut(s) 697
BstMAI GTCTC 2 cut(s) 65, 1058
BstMBI GATC 1 cut(s) 694
BstMWI GCNNNNNNNGC 1 cut(s) 1033
BstUI CGCG 1 cut(s) 1027
BstV1I GCAGC 1 cut(s) 784
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BsuI GTATCC 1 cut(s) 1113
BtgI CCRYGG 1 cut(s) 1025
BtsCI GGATG 5 cut(s) 12, 449, 508, 833, 874
BtsI GCAGTG 1 cut(s) 794
BtsIMutI CAGTG 1 cut(s) 794
Cac8I GCNNGC 3 cut(s) 1034, 1038, 1042
CfoI GCGC 2 cut(s) 979, 1046
Cfr10I RCCGGY 4 cut(s) 202, 253, 304, 355
Cfr42I CCGCGG 1 cut(s) 1028
Csp6I GTAC 1 cut(s) 707
CspAI ACCGGT 4 cut(s) 202, 253, 304, 355
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviAII CATG 5 cut(s) 108, 160, 499, 649, 749
CviQI GTAC 1 cut(s) 707
DdeI CTNAG 2 cut(s) 629, 744
DpnI GATC 1 cut(s) 696
DpnII GATC 1 cut(s) 694
DraI TTTAAA 1 cut(s) 804
DraIII CACNNNGTG 2 cut(s) 406, 615
Eam1104I CTCTTC 2 cut(s) 610, 713
EarI CTCTTC 2 cut(s) 610, 713
Eco130I CCWWGG 1 cut(s) 389
Eco47III AGCGCT 1 cut(s) 978
EcoRI GAATTC 1 cut(s) 669
EcoT14I CCWWGG 1 cut(s) 389
EcoT22I ATGCAT 1 cut(s) 650
ErhI CCWWGG 1 cut(s) 389
FaeI CATG 5 cut(s) 111, 163, 502, 652, 752
FaqI GGGAC 2 cut(s) 845, 1016
FatI CATG 5 cut(s) 107, 159, 498, 648, 748
FauI CCCGC 1 cut(s) 1032
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 785, 798
FokI GGATG 5 cut(s) 19, 436, 515, 840, 881
Fsp4HI GCNGC 2 cut(s) 785, 798
FspBI CTAG 1 cut(s) 390
FspI TGCGCA 1 cut(s) 1045
GlaI GCGC 2 cut(s) 978, 1045
GluI GCNGC 2 cut(s) 785, 798
HaeII RGCGCY 1 cut(s) 980
HapII CCGG 4 cut(s) 203, 254, 305, 356
HhaI GCGC 2 cut(s) 979, 1046
Hin1I GRCGYC 2 cut(s) 261, 363
Hin1II CATG 5 cut(s) 111, 163, 502, 652, 752
Hin6I GCGC 2 cut(s) 977, 1044
HinP1I GCGC 2 cut(s) 977, 1044
HincII GTYRAC 4 cut(s) 208, 259, 310, 361
HindII GTYRAC 4 cut(s) 208, 259, 310, 361
HinfI GANTC 1 cut(s) 563
HpaII CCGG 4 cut(s) 203, 254, 305, 356
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 6 cut(s) 208, 259, 310, 361, 430, 972
Hpy188I TCNGA 5 cut(s) 187, 289, 454, 717, 731
Hpy188III TCNNGA 5 cut(s) 197, 248, 299, 350, 825
Hpy8I GTNNAC 6 cut(s) 208, 259, 310, 361, 430, 972
Hpy99I CGWCG 2 cut(s) 266, 368
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 4 cut(s) 34, 886, 1069, 1101
HpyCH4IV ACGT 5 cut(s) 114, 210, 261, 312, 363
HpyCH4V TGCA 7 cut(s) 37, 449, 472, 575, 648, 1020, 1074
HpyF10VI GCNNNNNNNGC 1 cut(s) 1033
HpyF3I CTNAG 2 cut(s) 629, 744
HpySE526I ACGT 5 cut(s) 114, 210, 261, 312, 363
Hsp92I GRCGYC 2 cut(s) 261, 363
Hsp92II CATG 5 cut(s) 111, 163, 502, 652, 752
HspAI GCGC 2 cut(s) 977, 1044
KspI CCGCGG 1 cut(s) 1028
Kzo9I GATC 1 cut(s) 694
LmnI GCTCC 2 cut(s) 391, 1091
Lsp1109I GCAGC 1 cut(s) 784
LweI GCATC 5 cut(s) 358, 458, 724, 771, 859
MaeI CTAG 1 cut(s) 390
MaeII ACGT 5 cut(s) 114, 210, 261, 312, 363
MaeIII GTNAC 4 cut(s) 28, 103, 155, 996
MalI GATC 1 cut(s) 696
MboI GATC 1 cut(s) 694
MboII GAAGA 7 cut(s) 88, 597, 665, 668, 730, 995, 998
MflI RGATCY 1 cut(s) 694
MhlI GDGCHC 2 cut(s) 862, 963
Mph1103I ATGCAT 1 cut(s) 650
MroXI GAANNNNTTC 1 cut(s) 83
MseI TTAA 4 cut(s) 489, 558, 803, 921
MslI CAYNNNNRTG 1 cut(s) 92
MspA1I CMGCKG 2 cut(s) 1027, 1082
MspI CCGG 4 cut(s) 203, 254, 305, 356
Mva1269I GAATGC 1 cut(s) 650
MvnI CGCG 1 cut(s) 1027
MwoI GCNNNNNNNGC 1 cut(s) 1033
NdeII GATC 1 cut(s) 694
NlaIII CATG 5 cut(s) 111, 163, 502, 652, 752
NlaIV GGNNCC 2 cut(s) 696, 1093
NmuCI GTSAC 2 cut(s) 103, 996
NsbI TGCGCA 1 cut(s) 1045
NsiI ATGCAT 1 cut(s) 650
PctI GAATGC 1 cut(s) 650
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 563
PinAI ACCGGT 4 cut(s) 202, 253, 304, 355
PkrI GCNGC 2 cut(s) 786, 799
PsiI TTATAA 1 cut(s) 846
PspN4I GGNNCC 2 cut(s) 696, 1093
PsuI RGATCY 1 cut(s) 694
PvuII CAGCTG 1 cut(s) 1082
RsaI GTAC 1 cut(s) 708
RsaNI GTAC 1 cut(s) 707
RseI CAYNNNNRTG 1 cut(s) 92
SacII CCGCGG 1 cut(s) 1028
SaqAI TTAA 4 cut(s) 489, 558, 803, 921
SatI GCNGC 2 cut(s) 785, 798
Sau3AI GATC 1 cut(s) 694
SduI GDGCHC 2 cut(s) 862, 963
SfaNI GCATC 5 cut(s) 358, 458, 724, 771, 859
Sfr303I CCGCGG 1 cut(s) 1028
SgrBI CCGCGG 1 cut(s) 1028
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 2 cut(s) 62, 914
SmoI CTYRAG 2 cut(s) 62, 914
SsiI CCGC 4 cut(s) 26, 784, 1025, 1027
SspMI CTAG 1 cut(s) 390
StyI CCWWGG 1 cut(s) 389
TaaI ACNGT 4 cut(s) 34, 886, 1069, 1101
TaiI ACGT 5 cut(s) 117, 213, 264, 315, 366
TaqI TCGA 2 cut(s) 366, 466
TauI GCSGC 1 cut(s) 787
TfiI GAWTC 1 cut(s) 563
Tru1I TTAA 4 cut(s) 489, 558, 803, 921
Tru9I TTAA 4 cut(s) 489, 558, 803, 921
TscAI CASTG 1 cut(s) 794
TseFI GTSAC 2 cut(s) 103, 996
TseI GCWGC 1 cut(s) 797
Tsp45I GTSAC 2 cut(s) 103, 996
TspDTI ATGAA 3 cut(s) 76, 487, 765
TspRI CASTG 1 cut(s) 794
XapI RAATTY 4 cut(s) 492, 669, 754, 817
XcmI CCANNNNNNNNNTGG 1 cut(s) 616
XmaJI CCTAGG 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 1 cut(s) 390
ZraI GACGTC 2 cut(s) 262, 364
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.