Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8300873.1

Orthogroup ID

OG0000466

Physical Location & Seq

Genomic Coordinates Reverse (-)

152 .. 871

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8300873.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atggaggggaaaaccattattgcggtgattgttgcatgggtcagttacatggcgattaataagtggatatggacgccaatgaagcggggtccaagtccaatacggaaggatgataatgatccagcatctcgtccttcatcagcagctgaagcttcatcatcatcacctcctcctcctgagcagaaggatcatccagcatctcttccttcatcagcagctgaagtatcatcatcatcatcaccaccacctcctcctcctcctcctgggcagaagtatgatgtgtttttgagtttcaggggtgctgacactcgcaagggtatcacatctgatctataccatcgactgcagaggaggggaattaaaacattcatggataatccagatcttgaagttggggatgctatttctgacactctcttagctgcaattaaagaatcaagttttgcaatcgttgttctctcgcaaaattatgcttcttctacttggtgtttggaggaacttagagagatttgtctatgcatggaagacgacagtagaatcctgccacttttttataatgttgatcctactgatgtgcgatttcagaagaggagtttcgaagatgctttcactatgcatgtaaaatctgggcgacacaaatcagagaaggtggaggagtggaaagctgctttatacaaagtggccaatatctctgggtggaatacaaatgatcataagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

239

Amino Acids

26.62

Weight (kDa)

6.23

Isoelectric Point (pI)

67.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica	MD12G1125500.v1.1
prunus_persica	Prupe.2G112700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata	RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora	Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa	Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha	Rh1DG060500 Rh6BG033900
rosa_wichuraiana	Rw0G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AciI	CCGC	2 cut(s)	23, 85
AclWI	GGATC	3 cut(s)	113, 195, 557
AcoI	YGGCCR	1 cut(s)	681
AcuI	CTGAAG	2 cut(s)	168, 240
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	389
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	5 cut(s)	146, 152, 218, 422, 665
AluI	AGCT	5 cut(s)	146, 152, 218, 422, 665
AlwI	GGATC	3 cut(s)	113, 195, 557
AlwNI	CAGNNNCTG	2 cut(s)	146, 218
AoxI	GGCC	1 cut(s)	681
ApeKI	GCWGC	4 cut(s)	143, 215, 422, 665
AseI	ATTAAT	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	3 cut(s)	37, 156, 231
AsuII	TTCGAA	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	683
BbsI	GAAGAC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	155, 227, 409, 652
BccI	CCATC	1 cut(s)	345
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	709
BfmI	CTRYAG	1 cut(s)	344
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	4 cut(s)	144, 216, 423, 666
BlsI	GCNGC	4 cut(s)	145, 217, 424, 667
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	4 cut(s)	134, 206, 388, 592
BpiI	GAAGAC	1 cut(s)	531
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	597
BsaBI	GATNNNNATC	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	3 cut(s)	115, 190, 403
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	9 cut(s)	159, 162, 240, 243, 246, 249, 364, 604, 668
BseXI	GCAGC	4 cut(s)	155, 227, 409, 652
BshFI	GGCC	1 cut(s)	683
BslI	CCNNNNNNNGG	1 cut(s)	263
BsnI	GGCC	1 cut(s)	683
Bsp119I	TTCGAA	1 cut(s)	597
Bsp143I	GATC	6 cut(s)	118, 187, 328, 382, 562, 709
BspACI	CCGC	2 cut(s)	23, 85
BspANI	GGCC	1 cut(s)	683
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	348
BspPI	GGATC	3 cut(s)	113, 195, 557
BspT104I	TTCGAA	1 cut(s)	597
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	6 cut(s)	118, 187, 328, 382, 562, 709
BssNI	GRCGYC	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	533
Bst6I	CTCTTC	2 cut(s)	207, 581
BstACI	GRCGYC	1 cut(s)	74
BstBI	TTCGAA	1 cut(s)	597
BstDEI	CTNAG	3 cut(s)	177, 418, 500
BstF5I	GGATG	3 cut(s)	115, 190, 403
BstKTI	GATC	6 cut(s)	121, 190, 331, 385, 565, 712
BstMBI	GATC	6 cut(s)	118, 187, 328, 382, 562, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 149
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	344
BstV1I	GCAGC	4 cut(s)	155, 227, 409, 652
BstV2I	GAAGAC	1 cut(s)	531
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	683
BtsCI	GGATG	3 cut(s)	115, 190, 403
CaiI	CAGNNNCTG	2 cut(s)	146, 218
Cfr13I	GGNCC	1 cut(s)	89
CseI	GACGC	1 cut(s)	82
CviAII	CATG	5 cut(s)	36, 49, 370, 520, 617
CviJI	RGCY	6 cut(s)	146, 152, 218, 422, 665, 683
CviKI_1	RGCY	6 cut(s)	146, 152, 218, 422, 665, 683
DdeI	CTNAG	3 cut(s)	177, 418, 500
DpnI	GATC	6 cut(s)	120, 189, 330, 384, 564, 711
DpnII	GATC	6 cut(s)	118, 187, 328, 382, 562, 709
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	2 cut(s)	207, 581
EarI	CTCTTC	2 cut(s)	207, 581
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	2 cut(s)	168, 240
EcoRII	CCWGG	1 cut(s)	262
EcoT22I	ATGCAT	2 cut(s)	521, 618
FaeI	CATG	5 cut(s)	39, 52, 373, 523, 620
FatI	CATG	5 cut(s)	35, 48, 369, 519, 616
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	4 cut(s)	144, 216, 423, 666
FokI	GGATG	3 cut(s)	122, 177, 410
Fsp4HI	GCNGC	4 cut(s)	144, 216, 423, 666
GluI	GCNGC	4 cut(s)	144, 216, 423, 666
HaeIII	GGCC	1 cut(s)	683
HgaI	GACGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	5 cut(s)	39, 52, 373, 523, 620
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	2 cut(s)	434, 537
HphI	GGTGA	3 cut(s)	37, 156, 231
Hpy188I	TCNGA	4 cut(s)	328, 409, 585, 643
Hpy188III	TCNNGA	3 cut(s)	176, 380, 386
HpyAV	CCTTC	5 cut(s)	100, 144, 178, 216, 640
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4V	TGCA	6 cut(s)	35, 346, 425, 446, 519, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 149
HpyF3I	CTNAG	3 cut(s)	177, 418, 500
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	5 cut(s)	39, 52, 373, 523, 620
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	6 cut(s)	118, 187, 328, 382, 562, 709
Lsp1109I	GCAGC	4 cut(s)	155, 227, 409, 652
LweI	GCATC	4 cut(s)	134, 206, 388, 592
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	6 cut(s)	120, 189, 330, 384, 564, 711
MboI	GATC	6 cut(s)	118, 187, 328, 382, 562, 709
MboII	GAAGA	5 cut(s)	194, 468, 536, 598, 611
MflI	RGATCY	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	3 cut(s)	357, 426, 466
MluNI	TGGCCA	1 cut(s)	683
Mox20I	TGGCCA	1 cut(s)	683
Mph1103I	ATGCAT	2 cut(s)	521, 618
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	3 cut(s)	57, 360, 429
Msp20I	TGGCCA	1 cut(s)	683
MspA1I	CMGCKG	2 cut(s)	146, 218
MspR9I	CCNGG	1 cut(s)	264
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	82, 149
NdeII	GATC	6 cut(s)	118, 187, 328, 382, 562, 709
NlaIII	CATG	5 cut(s)	39, 52, 373, 523, 620
NlaIV	GGNNCC	1 cut(s)	90
NsiI	ATGCAT	2 cut(s)	521, 618
NspI	RCATGY	1 cut(s)	620
NspV	TTCGAA	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	434, 537
PkrI	GCNGC	4 cut(s)	145, 217, 424, 667
PshBI	ATTAAT	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	348
PstNI	CAGNNNCTG	2 cut(s)	146, 218
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	2 cut(s)	146, 218
SaqAI	TTAA	3 cut(s)	57, 360, 429
SatI	GCNGC	4 cut(s)	144, 216, 423, 666
Sau3AI	GATC	6 cut(s)	118, 187, 328, 382, 562, 709
Sau96I	GGNCC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	8 cut(s)	148, 154, 169, 220, 250, 424, 651, 667
SfaNI	GCATC	4 cut(s)	134, 206, 388, 592
SfcI	CTRYAG	1 cut(s)	344
SfuI	TTCGAA	1 cut(s)	597
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	3 cut(s)	357, 426, 466
SsiI	CCGC	2 cut(s)	23, 85
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	533
TaqI	TCGA	2 cut(s)	340, 597
TasI	AATT	3 cut(s)	357, 426, 466
TfiI	GAWTC	2 cut(s)	434, 537
Tru1I	TTAA	3 cut(s)	57, 360, 429
Tru9I	TTAA	3 cut(s)	57, 360, 429
TseI	GCWGC	4 cut(s)	143, 215, 422, 665
TspDTI	ATGAA	5 cut(s)	95, 126, 144, 198, 358
TspGWI	ACGGA	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	89
VspI	ATTAAT	1 cut(s)	57
XceI	RCATGY	1 cut(s)	620
Zsp2I	ATGCAT	2 cut(s)	521, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.