Rmu_co8167342.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8167342.1
OG0000466
Physical Location & Seq
Reverse (-)
2 .. 593
592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8167342.1_g000001.1.cds

Sequence Viewer

Length: 315 bp
atgggtcaacaagtcctgcccgtcttctacaaggtggatccttctgatgtgcggcaccaaaggggaaggtttgagctcaaaagggaccccgaagtagaagtaagggcacatgaagaagtttatgggaataatgaggacagactaaatgcgtggagagatgctttgacacaggtggccaacctttctggctgggattccaagaattatcaacatgaatcaagtttaattgacgagcttgttaatcatatactaaagaagtccgtgtatacatcttcaagtgttgacaagggcttcataggaatgggttctcgcatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

105

Amino Acids

12.09

Weight (kDa)

6.05

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 54
AccI GTMKAC 1 cut(s) 266
AciI CCGC 1 cut(s) 52
AclWI GGATC 2 cut(s) 32, 45
AcoI YGGCCR 1 cut(s) 174
AgsI TTSAA 1 cut(s) 276
AluBI AGCT 2 cut(s) 76, 235
AluI AGCT 2 cut(s) 76, 235
Alw21I GWGCWC 1 cut(s) 78
AlwI GGATC 2 cut(s) 32, 45
AoxI GGCC 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 85
AvaII GGWCC 1 cut(s) 85
BaeGI GKGCMC 1 cut(s) 109
BalI TGGCCA 1 cut(s) 176
BamHI GGATCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 54
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 78
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 4 cut(s) 39, 56, 86, 87
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 16
BseSI GKGCMC 1 cut(s) 109
BseYI CCCAGC 1 cut(s) 189
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 78
BslFI GGGAC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 78, 109
Bsp143I GATC 1 cut(s) 37
BspACI CCGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 176
BspLI GGNNCC 4 cut(s) 39, 56, 86, 87
BspPI GGATC 2 cut(s) 32, 45
BspT107I GGYRCC 1 cut(s) 54
BssMI GATC 1 cut(s) 37
BssNAI GTATAC 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 267
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BstZ17I GTATAC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 85
CviAII CATG 2 cut(s) 110, 212
CviJI RGCY 5 cut(s) 76, 176, 189, 235, 291
CviKI_1 RGCY 5 cut(s) 76, 176, 189, 235, 291
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 2 cut(s) 113, 215
FaiI YATR 7 cut(s) 111, 123, 213, 246, 248, 267, 296
FaqI GGGAC 1 cut(s) 98
FatI CATG 2 cut(s) 109, 211
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 1 cut(s) 53
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
GsaI CCCAGC 1 cut(s) 193
HaeIII GGCC 1 cut(s) 176
Hin1II CATG 2 cut(s) 113, 215
HincII GTYRAC 2 cut(s) 8, 283
HindII GTYRAC 2 cut(s) 8, 283
HinfI GANTC 2 cut(s) 194, 215
Hpy166II GTNNAC 3 cut(s) 8, 267, 283
Hpy188I TCNGA 1 cut(s) 46
Hpy8I GTNNAC 3 cut(s) 8, 267, 283
HpyAV CCTTC 2 cut(s) 51, 60
Hsp92II CATG 2 cut(s) 113, 215
KflI GGGWCCC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 29, 155, 171, 175
LweI GCATC 1 cut(s) 148
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 3 cut(s) 16, 125, 264
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 78, 109
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 2 cut(s) 202, 225
MluNI TGGCCA 1 cut(s) 176
MnlI CCTC 1 cut(s) 127
Mox20I TGGCCA 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 304
MscI TGGCCA 1 cut(s) 176
MseI TTAA 2 cut(s) 224, 240
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 176
NdeII GATC 1 cut(s) 37
NlaIII CATG 2 cut(s) 113, 215
NlaIV GGNNCC 4 cut(s) 39, 56, 86, 87
PdmI GAANNNNTTC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 194, 215
PkrI GCNGC 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 85
PspFI CCCAGC 1 cut(s) 189
PspN4I GGNNCC 4 cut(s) 39, 56, 86, 87
PspPI GGNCC 1 cut(s) 85
PspPPI RGGWCCY 1 cut(s) 85
PsuI RGATCY 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 299
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 224, 240
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 1 cut(s) 85
SduI GDGCHC 2 cut(s) 78, 109
SetI ASST 6 cut(s) 36, 71, 78, 174, 183, 237
SfaNI GCATC 1 cut(s) 148
SinI GGWCC 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 2 cut(s) 202, 225
SsiI CCGC 1 cut(s) 52
SstI GAGCTC 1 cut(s) 78
TasI AATT 2 cut(s) 202, 225
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 2 cut(s) 194, 215
Tru1I TTAA 2 cut(s) 224, 240
Tru9I TTAA 2 cut(s) 224, 240
TspDTI ATGAA 3 cut(s) 126, 228, 283
TspGWI ACGGA 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.