Rmu_sc0000252.1_g000008

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000252.1
OG0000466
Physical Location & Seq
Forward (+)
26196 .. 26708
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000252.1_g000008.1.cds

Sequence Viewer

Length: 513 bp
atggcgtcaacctcttctcgtcgtcgtcaatggaaatacgatgtctttctaagtttcaggggggaagatacgcgcgatggttttaccgcttttctgtattctgctctaactcagagaggaattctggcctttatggatgacgcagagcttgagaaaggaaaatccattaggcctgaactttcagctgcaattgaggagtctagatctgcgattgtcattctctcatggagatatgcttattcgtcatggtgcttggatgaactcgttaagattattcaatgcatgaaagagaggggccaacaagtcatccccgtcttcttaaacggcgtggatccttctgatgtgcagcaccaaaggggattttttgagctcaaaaggaaaccccaagtagaggtggaagtaagggaacatgaattagtttatggggaggatgaggacagactaaatgcgtggagagctgctttgactgacgtcgccaatctttctggctgggatttcaagaatgatttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

170

Amino Acids

19.7

Weight (kDa)

5.18

Isoelectric Point (pI)

37.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 474
AccII CGCG 2 cut(s) 73, 75
AciI CCGC 1 cut(s) 87
AclWI GGATC 2 cut(s) 326, 339
AcsI RAATTY 1 cut(s) 120
AcyI GRCGYC 2 cut(s) 5, 471
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 2 cut(s) 278, 499
AluBI AGCT 4 cut(s) 148, 185, 370, 458
AluI AGCT 4 cut(s) 148, 185, 370, 458
Alw21I GWGCWC 1 cut(s) 372
AlwI GGATC 2 cut(s) 326, 339
AoxI GGCC 3 cut(s) 126, 170, 295
ApeKI GCWGC 3 cut(s) 185, 346, 458
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 295
BamHI GGATCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 372
BbvI GCAGC 3 cut(s) 172, 358, 445
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 340
BfaI CTAG 1 cut(s) 201
BglII AGATCT 1 cut(s) 203
BisI GCNGC 3 cut(s) 186, 347, 459
BlsI GCNGC 3 cut(s) 187, 348, 460
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 2 cut(s) 296, 333
BoxI GACNNNNGTC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 170
BsaHI GRCGYC 2 cut(s) 5, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 391
BseGI GGATG 4 cut(s) 142, 262, 306, 436
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 125
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 3 cut(s) 172, 358, 445
BseYI CCCAGC 1 cut(s) 489
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 2 cut(s) 73, 75
BshFI GGCC 3 cut(s) 128, 172, 297
BsiHKAI GWGCWC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 391
BsnI GGCC 3 cut(s) 128, 172, 297
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 2 cut(s) 203, 331
BspACI CCGC 1 cut(s) 87
BspANI GGCC 3 cut(s) 128, 172, 297
BspCNI CTCAG 1 cut(s) 124
BspFNI CGCG 2 cut(s) 73, 75
BspLI GGNNCC 2 cut(s) 296, 333
BspPI GGATC 2 cut(s) 326, 339
BssMI GATC 2 cut(s) 203, 331
BssNI GRCGYC 2 cut(s) 5, 471
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 2 cut(s) 5, 471
BstDEI CTNAG 2 cut(s) 50, 111
BstF5I GGATG 4 cut(s) 142, 262, 306, 436
BstFNI CGCG 2 cut(s) 73, 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 2 cut(s) 206, 334
BstMBI GATC 2 cut(s) 203, 331
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstPAI GACNNNNGTC 1 cut(s) 470
BstUI CGCG 2 cut(s) 73, 75
BstV1I GCAGC 3 cut(s) 172, 358, 445
BstV2I GAAGAC 1 cut(s) 307
BstX2I RGATCY 2 cut(s) 203, 331
BstYI RGATCY 2 cut(s) 203, 331
BsuRI GGCC 3 cut(s) 128, 172, 297
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 4 cut(s) 142, 262, 306, 436
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 1 cut(s) 149
CviAII CATG 4 cut(s) 225, 246, 283, 410
CviJI RGCY 8 cut(s) 128, 148, 172, 185, 297, 370, 458, 489
CviKI_1 RGCY 8 cut(s) 128, 148, 172, 185, 297, 370, 458, 489
DdeI CTNAG 2 cut(s) 50, 111
DpnI GATC 2 cut(s) 205, 333
DpnII GATC 2 cut(s) 203, 331
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 370
Eco147I AGGCCT 1 cut(s) 172
Eco24I GRGCYC 1 cut(s) 372
Eco53kI GAGCTC 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 370
EcoRI GAATTC 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 372
FaeI CATG 4 cut(s) 228, 249, 286, 413
FaiI YATR 7 cut(s) 134, 226, 234, 247, 284, 411, 423
FatI CATG 4 cut(s) 224, 245, 282, 409
Fnu4HI GCNGC 3 cut(s) 186, 347, 459
FokI GGATG 4 cut(s) 149, 269, 293, 443
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 3 cut(s) 186, 347, 459
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 74
GluI GCNGC 3 cut(s) 186, 347, 459
GsaI CCCAGC 1 cut(s) 493
HaeIII GGCC 3 cut(s) 128, 172, 297
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 2 cut(s) 5, 471
Hin1II CATG 4 cut(s) 228, 249, 286, 413
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 114, 340
Hpy188III TCNNGA 2 cut(s) 201, 499
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 3 cut(s) 24, 27, 476
HpyAV CCTTC 1 cut(s) 345
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 3 cut(s) 188, 282, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 2 cut(s) 50, 111
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 2 cut(s) 5, 471
Hsp92II CATG 4 cut(s) 228, 249, 286, 413
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 203, 331
LpnPI CCDG 5 cut(s) 43, 110, 186, 471, 475
Lsp1109I GCAGC 3 cut(s) 172, 358, 445
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 471
MalI GATC 2 cut(s) 205, 333
MboI GATC 2 cut(s) 203, 331
MboII GAAGA 3 cut(s) 6, 77, 307
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 2 cut(s) 203, 331
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 3 cut(s) 120, 189, 413
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 7 cut(s) 22, 110, 187, 285, 385, 421, 427
Mph1103I ATGCAT 1 cut(s) 284
MseI TTAA 2 cut(s) 267, 320
MspA1I CMGCKG 1 cut(s) 185
MunI CAATTG 1 cut(s) 189
MvnI CGCG 2 cut(s) 73, 75
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 2 cut(s) 203, 331
NlaIII CATG 4 cut(s) 228, 249, 286, 413
NlaIV GGNNCC 2 cut(s) 296, 333
NsiI ATGCAT 1 cut(s) 284
PceI AGGCCT 1 cut(s) 172
PkrI GCNGC 3 cut(s) 187, 348, 460
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PshAI GACNNNNGTC 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 296, 333
PspPI GGNCC 1 cut(s) 295
PsuI RGATCY 2 cut(s) 203, 331
PvuII CAGCTG 1 cut(s) 185
SacI GAGCTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 267, 320
SatI GCNGC 3 cut(s) 186, 347, 459
Sau3AI GATC 2 cut(s) 203, 331
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 372
SetI ASST 7 cut(s) 14, 150, 187, 372, 396, 460, 474
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 3 cut(s) 120, 189, 413
SseBI AGGCCT 1 cut(s) 172
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 201
SstI GAGCTC 1 cut(s) 372
StuI AGGCCT 1 cut(s) 172
TaiI ACGT 1 cut(s) 474
TasI AATT 3 cut(s) 120, 189, 413
Tru1I TTAA 2 cut(s) 267, 320
Tru9I TTAA 2 cut(s) 267, 320
TseI GCWGC 3 cut(s) 185, 346, 458
TspDTI ATGAA 3 cut(s) 273, 299, 426
XapI RAATTY 1 cut(s) 120
XbaI TCTAGA 1 cut(s) 200
XspI CTAG 1 cut(s) 201
ZraI GACGTC 1 cut(s) 472
Zsp2I ATGCAT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.