Rh1DG060500

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000466
Physical Location & Seq
Forward (+)
10536468 .. 10537040
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG060500.1

Sequence Viewer

Length: 573 bp
ATGACAGTCGTAATCTGGGGAATTACATCACTGCCCTCCTCCTTCAAAACTTGTGGACAGGAACGACCGACATACCTGAGCCCCCACAGGGCGCACCACACGCCTGGCGTACTCAGACGCACCCATAGACTAAAGTTGAATATTATATTCAAAGTAGAATGTGAGACCCTTTTAGCTGGAGAGTGGAATCAAGTCGGGCCATTGACTAGAAAGAGAGTATTTCCGTCAACAACAGGCGACTTTACTCTGATTCAATTCCGAAGGAGATCGATGGCGTCAACCTCTTCTCGTCGTCAATGGACATACGATGTCTTTCTAAGTTTCAGGGGAAAAGATACCCGCTATGCTTTTACCACTCATCTGTACTCTGGCCTACTTCGGAAAGGAATTCTGACCTTTATGGATGACGCAGAGCTTGAGAAAGGAAAATCCATTAGGCCTGAACTTTTAGCTGCAATTGAGGAGTCCAGATCTGCTATTGTCATTCTCTCACCCAACTATGCTTCTTCGTCATGGTGTTTGGATGGGCCAACAATTCCTCCCCGTCTTCTACGACGGCGTGTTTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

190

Amino Acids

21.77

Weight (kDa)

10.44

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 102 - 175 7.3e-26 TIR domain
TIR_2 PF13676 104 - 174 7.6e-12 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 340
AcsI RAATTY 1 cut(s) 387
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 2 cut(s) 111, 365
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 4 cut(s) 46, 139, 151, 254
AjnI CCWGG 1 cut(s) 103
AluBI AGCT 3 cut(s) 176, 415, 452
AluI AGCT 3 cut(s) 176, 415, 452
Alw26I GTCTC 1 cut(s) 158
AoxI GGCC 4 cut(s) 197, 370, 437, 527
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 1 cut(s) 387
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 197, 527
AsuHPI GGTGA 1 cut(s) 483
BanII GRGCYC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 539
BbvI GCAGC 1 cut(s) 439
BccI CCATC 2 cut(s) 265, 518
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 207
BglII AGATCT 1 cut(s) 470
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 105
BmgT120I GGNCC 2 cut(s) 197, 527
BmrFI CCNGG 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 275
BsaI GGTCTC 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 523, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 269
BseGI GGATG 2 cut(s) 409, 529
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 2 cut(s) 68, 127
BseRI GAGGAG 2 cut(s) 28, 476
BseXI GCAGC 1 cut(s) 439
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 4 cut(s) 199, 372, 439, 529
BshVI ATCGAT 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 158
BsnI GGCC 4 cut(s) 199, 372, 439, 529
Bso31I GGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 266, 470
BspACI CCGC 1 cut(s) 340
BspANI GGCC 4 cut(s) 199, 372, 439, 529
BspCNI CTCAG 2 cut(s) 69, 126
BspDI ATCGAT 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 158
BssMI GATC 2 cut(s) 266, 470
BssNI GRCGYC 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 289
BstACI GRCGYC 1 cut(s) 275
BstDEI CTNAG 3 cut(s) 77, 113, 317
BstF5I GGATG 2 cut(s) 409, 529
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 2 cut(s) 269, 473
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 2 cut(s) 266, 470
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 539
BstX2I RGATCY 1 cut(s) 470
BstXI CCANNNNNNTGG 1 cut(s) 104
BstYI RGATCY 1 cut(s) 470
Bsu15I ATCGAT 1 cut(s) 269
BsuRI GGCC 4 cut(s) 199, 372, 439, 529
BsuTUI ATCGAT 1 cut(s) 269
BtsCI GGATG 2 cut(s) 409, 529
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 197, 527
ClaI ATCGAT 1 cut(s) 269
CseI GACGC 3 cut(s) 126, 264, 416
Csp6I GTAC 2 cut(s) 110, 364
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviAII CATG 1 cut(s) 513
CviJI RGCY 8 cut(s) 81, 176, 199, 372, 415, 439, 452, 529
CviKI_1 RGCY 8 cut(s) 81, 176, 199, 372, 415, 439, 452, 529
CviQI GTAC 2 cut(s) 110, 364
DdeI CTNAG 3 cut(s) 77, 113, 317
DpnI GATC 2 cut(s) 268, 472
DpnII GATC 2 cut(s) 266, 470
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 387
EcoRII CCWGG 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 83
FaeI CATG 1 cut(s) 516
FaiI YATR 8 cut(s) 73, 126, 146, 304, 345, 401, 501, 514
FatI CATG 1 cut(s) 512
FauI CCCGC 1 cut(s) 347
Fnu4HI GCNGC 1 cut(s) 453
FokI GGATG 2 cut(s) 416, 536
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 4 cut(s) 199, 372, 439, 529
HgaI GACGC 3 cut(s) 126, 264, 416
HhaI GCGC 1 cut(s) 94
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 1 cut(s) 516
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HincII GTYRAC 2 cut(s) 228, 279
HindII GTYRAC 2 cut(s) 228, 279
HinfI GANTC 3 cut(s) 187, 250, 464
HphI GGTGA 1 cut(s) 483
Hpy166II GTNNAC 3 cut(s) 56, 228, 279
Hpy188I TCNGA 6 cut(s) 116, 249, 260, 381, 393, 572
Hpy188III TCNNGA 1 cut(s) 468
Hpy8I GTNNAC 3 cut(s) 56, 228, 279
Hpy99I CGWCG 2 cut(s) 294, 558
HpyAV CCTTC 2 cut(s) 52, 255
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 1 cut(s) 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 3 cut(s) 77, 113, 317
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 1 cut(s) 516
HspAI GCGC 1 cut(s) 92
Kzo9I GATC 2 cut(s) 266, 470
Lsp1109I GCAGC 1 cut(s) 439
MaeI CTAG 1 cut(s) 207
MalI GATC 2 cut(s) 268, 472
MboI GATC 2 cut(s) 266, 470
MboII GAAGA 3 cut(s) 276, 498, 539
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 1 cut(s) 470
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 5 cut(s) 21, 254, 387, 456, 534
MlyI GAGTC 1 cut(s) 473
MnlI CCTC 5 cut(s) 46, 49, 292, 454, 549
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 456
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 2 cut(s) 266, 470
NlaIII CATG 1 cut(s) 516
PceI AGGCCT 1 cut(s) 439
PfeI GAWTC 2 cut(s) 187, 250
PkrI GCNGC 1 cut(s) 454
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspPI GGNCC 2 cut(s) 197, 527
PsuI RGATCY 1 cut(s) 470
RsaI GTAC 2 cut(s) 111, 365
RsaNI GTAC 2 cut(s) 110, 364
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 2 cut(s) 266, 470
Sau96I GGNCC 2 cut(s) 197, 527
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 83
SetI ASST 6 cut(s) 78, 178, 284, 398, 417, 454
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 5 cut(s) 21, 254, 387, 456, 534
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 1 cut(s) 340
SspI AATATT 1 cut(s) 142
SspMI CTAG 1 cut(s) 207
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 1 cut(s) 269
TaqII GACCGA 1 cut(s) 82
TasI AATT 5 cut(s) 21, 254, 387, 456, 534
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 2 cut(s) 187, 250
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 452
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 36
XapI RAATTY 1 cut(s) 387
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.