Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000908.1

Orthogroup ID

OG0000466

Physical Location & Seq

Genomic Coordinates Reverse (-)

84465 .. 85594

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000908.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atggagttctatttcttccagatggtgttggcgattcctgtggtaattgtgacatggatcggtgtcgtagccagtcttaagtggatatggaagagttggttcagttacatggttgaaaagccagagccaatatcagaggataatcaagaaccggttgacgtcgatgcctctgcacctcttccttcatcatcagctgaatcatcagctcctaggtggaagcatgatgtgtttttgagtttcaggggtggagacactcgcaaaggtattgcattcgaattatacgatcgactgcaaaacaggagaggaatcaaaacattcatggatgaccaagaccttcaagtaggggatgttatttctcccactctcctaacggcaattaaagaatcaaggcttgcaattattgttctctctcaaaactatgccacttccacttggtgtttggaggaacttagaaacatttgtgaatgcatggaagaagacaacaacagaattctaccacttttttattatgtggatcctactgatgtacgatatcagaagagcagtttcggagatgctttcactaagcatgaaaactctgggcgacacagatcagagaaggtgcagcagtggagagatgctttaaaaaaagtggcaaatttctctgggtggcatacactgaattataaaactgaaagagaacttttggatgccattgagaaatctgtgtgcaataaattacgacctactggacttgagtttaaaatgtccatcggaggttttgaagcatttaaagcaacaaaacaagccattgatgaggtcatgaatgcgctaaaagatgatgaggccacttgcattggagtctacggaatgggggggggtcggaaaaacgacaatggtgaaatatattggagcactagcccaagaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

303

Amino Acids

34.69

Weight (kDa)

5.58

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica	MD12G1125500.v1.1
prunus_persica	Prupe.2G112700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata	RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora	Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa	Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha	Rh1DG060500 Rh6BG033900
rosa_wichuraiana	Rw0G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AatII	GACGTC	1 cut(s)	162
AccI	GTMKAC	1 cut(s)	843
AclWI	GGATC	3 cut(s)	65, 509, 522
AcsI	RAATTY	2 cut(s)	489, 637
AcyI	GRCGYC	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	435
AfaI	GTAC	1 cut(s)	528
AflII	CTTAAG	1 cut(s)	77
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	116, 338, 764
AluBI	AGCT	2 cut(s)	194, 206
AluI	AGCT	2 cut(s)	194, 206
Alw21I	GWGCWC	1 cut(s)	896
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	3 cut(s)	65, 509, 522
AoxI	GGCC	1 cut(s)	825
ApeKI	GCWGC	1 cut(s)	604
ApoI	RAATTY	2 cut(s)	489, 637
AsiGI	ACCGGT	1 cut(s)	151
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	811
AsuHPI	GGTGA	1 cut(s)	890
AsuII	TTCGAA	1 cut(s)	273
AvrII	CCTAGG	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	1 cut(s)	896
BbvI	GCAGC	1 cut(s)	616
BccI	CCATC	2 cut(s)	16, 758
BceAI	ACGGC	1 cut(s)	387
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	2 cut(s)	210, 897
BfrI	CTTAAG	1 cut(s)	77
BisI	GCNGC	1 cut(s)	605
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	606
BmiI	GGNNCC	1 cut(s)	516
BmsI	GCATC	4 cut(s)	154, 544, 607, 679
BpiI	GAAGAC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	755
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	151
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	2 cut(s)	72, 733
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	3 cut(s)	328, 352, 694
BseNI	ACTGG	2 cut(s)	72, 733
BseXI	GCAGC	1 cut(s)	616
BsgI	GTGCAG	2 cut(s)	156, 623
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	827
BshTI	ACCGGT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	896
BsiSI	CCGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	243
BsmI	GAATGC	3 cut(s)	269, 470, 811
BsnI	GGCC	1 cut(s)	827
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	896
Bsp143I	GATC	4 cut(s)	57, 283, 514, 590
BspANI	GGCC	1 cut(s)	827
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	1 cut(s)	516
BspPI	GGATC	3 cut(s)	65, 509, 522
BspQI	GCTCTTC	1 cut(s)	533
BspT104I	TTCGAA	1 cut(s)	273
BspTI	CTTAAG	1 cut(s)	77
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	72, 733
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	209
BssMI	GATC	4 cut(s)	57, 283, 514, 590
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	209
Bst6I	CTCTTC	3 cut(s)	86, 183, 533
BstACI	GRCGYC	1 cut(s)	159
BstAFI	CTTAAG	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	449, 564
BstF5I	GGATG	3 cut(s)	328, 352, 694
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	4 cut(s)	60, 286, 517, 593
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	4 cut(s)	57, 283, 514, 590
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	773
BstV1I	GCAGC	1 cut(s)	616
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	827
BtsCI	GGATG	3 cut(s)	328, 352, 694
BtsI	GCAGTG	1 cut(s)	614
BtsIMutI	CAGTG	2 cut(s)	614, 656
Cac8I	GCNNGC	1 cut(s)	393
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	1 cut(s)	811
Cfr10I	RCCGGY	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	527
CspAI	ACCGGT	1 cut(s)	151
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	7 cut(s)	54, 109, 221, 319, 469, 569, 802
CviJI	RGCY	9 cut(s)	71, 121, 127, 194, 206, 391, 788, 827, 900
CviKI_1	RGCY	9 cut(s)	71, 121, 127, 194, 206, 391, 788, 827, 900
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	2 cut(s)	449, 564
DpnI	GATC	4 cut(s)	59, 285, 516, 592
DpnII	GATC	4 cut(s)	57, 283, 514, 590
DraI	TTTAAA	3 cut(s)	624, 742, 772
DraIII	CACNNNGTG	1 cut(s)	435
Eam1104I	CTCTTC	3 cut(s)	86, 183, 533
EarI	CTCTTC	3 cut(s)	86, 183, 533
Eco130I	CCWWGG	1 cut(s)	209
Eco32I	GATATC	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	489
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	209
EcoT22I	ATGCAT	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	209
FaeI	CATG	7 cut(s)	57, 112, 224, 322, 472, 572, 805
FatI	CATG	7 cut(s)	53, 108, 220, 318, 468, 568, 801
FblI	GTMKAC	1 cut(s)	843
Fnu4HI	GCNGC	1 cut(s)	605
FokI	GGATG	3 cut(s)	335, 359, 701
Fsp4HI	GCNGC	1 cut(s)	605
FspBI	CTAG	2 cut(s)	210, 897
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	1 cut(s)	605
HaeIII	GGCC	1 cut(s)	827
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	811
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	7 cut(s)	57, 112, 224, 322, 472, 572, 805
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	5 cut(s)	34, 197, 306, 383, 840
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	890
Hpy166II	GTNNAC	2 cut(s)	157, 844
Hpy188I	TCNGA	6 cut(s)	136, 537, 551, 595, 755, 864
Hpy188III	TCNNGA	3 cut(s)	19, 146, 802
Hpy8I	GTNNAC	2 cut(s)	157, 844
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	3 cut(s)	192, 344, 592
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	8 cut(s)	173, 269, 292, 395, 468, 604, 711, 834
HpyF10VI	GCNNNNNNNGC	1 cut(s)	773
HpyF3I	CTNAG	2 cut(s)	449, 564
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	7 cut(s)	57, 112, 224, 322, 472, 572, 805
HspAI	GCGC	1 cut(s)	809
Kzo9I	GATC	4 cut(s)	57, 283, 514, 590
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	2 cut(s)	211, 891
Lsp1109I	GCAGC	1 cut(s)	616
LweI	GCATC	4 cut(s)	154, 544, 607, 679
MaeI	CTAG	2 cut(s)	210, 897
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	49, 104
MalI	GATC	4 cut(s)	59, 285, 516, 592
MboI	GATC	4 cut(s)	57, 283, 514, 590
MboII	GAAGA	6 cut(s)	7, 103, 170, 485, 488, 550
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	896
MluCI	AATT	8 cut(s)	45, 275, 375, 396, 489, 637, 661, 716
MlyI	GAGTC	1 cut(s)	849
MmeI	TCCRAC	1 cut(s)	842
MnlI	CCTC	8 cut(s)	130, 178, 186, 296, 436, 749, 790, 817
Mph1103I	ATGCAT	1 cut(s)	470
MseI	TTAA	5 cut(s)	78, 378, 623, 741, 771
MspA1I	CMGCKG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	77
MspI	CCGG	1 cut(s)	152
Mva1269I	GAATGC	3 cut(s)	269, 470, 811
MwoI	GCNNNNNNNGC	1 cut(s)	773
NdeII	GATC	4 cut(s)	57, 283, 514, 590
NlaIII	CATG	7 cut(s)	57, 112, 224, 322, 472, 572, 805
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	49
NsiI	ATGCAT	1 cut(s)	470
NspV	TTCGAA	1 cut(s)	273
PagI	TCATGA	1 cut(s)	801
PciSI	GCTCTTC	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	3 cut(s)	269, 470, 811
PfeI	GAWTC	4 cut(s)	34, 197, 306, 383
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	606
Ple19I	CGATCG	1 cut(s)	286
PleI	GAGTC	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	848
PsiI	TTATAA	1 cut(s)	666
PspN4I	GGNNCC	1 cut(s)	516
PsuI	RGATCY	1 cut(s)	514
PvuI	CGATCG	1 cut(s)	286
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	5 cut(s)	78, 378, 623, 741, 771
SatI	GCNGC	1 cut(s)	605
Sau3AI	GATC	4 cut(s)	57, 283, 514, 590
SchI	GAGTC	1 cut(s)	849
SduI	GDGCHC	1 cut(s)	896
SfaNI	GCATC	4 cut(s)	154, 544, 607, 679
SfuI	TTCGAA	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	77, 734
SmoI	CTYRAG	2 cut(s)	77, 734
Sse9I	AATT	8 cut(s)	45, 275, 375, 396, 489, 637, 661, 716
SspMI	CTAG	2 cut(s)	210, 897
StyI	CCWWGG	1 cut(s)	209
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	162, 273, 286
TasI	AATT	8 cut(s)	45, 275, 375, 396, 489, 637, 661, 716
TfiI	GAWTC	4 cut(s)	34, 197, 306, 383
Tru1I	TTAA	5 cut(s)	78, 378, 623, 741, 771
Tru9I	TTAA	5 cut(s)	78, 378, 623, 741, 771
TscAI	CASTG	2 cut(s)	614, 663
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	604
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	174, 307, 585, 818
TspGWI	ACGGA	1 cut(s)	861
TspRI	CASTG	2 cut(s)	614, 663
Vha464I	CTTAAG	1 cut(s)	77
XapI	RAATTY	2 cut(s)	489, 637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmaJI	CCTAGG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	843
XspI	CTAG	2 cut(s)	210, 897
ZraI	GACGTC	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.