Rmu_co8180788.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8180788.1
OG0000466
Physical Location & Seq
Reverse (-)
254 .. 664
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8180788.1_g000001.1.cds

Sequence Viewer

Length: 411 bp
ctgtattctgcactaaatcagaaaggaattctcacctttcgggatgacccagagcttgggaaaggaaaatccctaaggcctgaacttttagctgcaattgaggagtctagatttgcgattgtcattctctcacggagctatgcttcttcgtcatggtgtttggatgaacttgtcaagattattcaatgcatgaaagagatgggccaacaagtcctgcccgtcttctacagggtggatccttctgatgtgcggcaccaaaggggaagttttgagctcaaatgggaaccccaagtagaagtaagggaacatgtagaagtttatgggaagaatgaggacagactaaatgcgtggagagctgctttgacagaggtggccaatctttctggctgggtttacaagagttattcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

136

Amino Acids

15.68

Weight (kDa)

6.18

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccB7I CCANNNNNTGG 1 cut(s) 56
AciI CCGC 1 cut(s) 250
AclWI GGATC 2 cut(s) 230, 243
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 56
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 5 cut(s) 55, 92, 138, 274, 356
AluI AGCT 5 cut(s) 55, 92, 138, 274, 356
Alw21I GWGCWC 1 cut(s) 276
AlwI GGATC 2 cut(s) 230, 243
AoxI GGCC 3 cut(s) 77, 202, 372
ApeKI GCWGC 2 cut(s) 92, 356
ApoI RAATTY 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 25
AxyI CCTNAGG 1 cut(s) 74
BalI TGGCCA 1 cut(s) 374
BamHI GGATCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 79, 343
BccI CCATC 1 cut(s) 193
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 226
BisI GCNGC 3 cut(s) 93, 251, 357
BlsI GCNGC 3 cut(s) 94, 252, 358
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 3 cut(s) 237, 254, 285
BpiI GAAGAC 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse21I CCTNAGG 1 cut(s) 74
BseGI GGATG 2 cut(s) 49, 169
BseLI CCNNNNNNNGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 79, 343
BseYI CCCAGC 1 cut(s) 387
BshFI GGCC 3 cut(s) 79, 204, 374
BshNI GGYRCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 56
BsnI GGCC 3 cut(s) 79, 204, 374
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 1 cut(s) 250
BspANI GGCC 3 cut(s) 79, 204, 374
BspLI GGNNCC 3 cut(s) 237, 254, 285
BspPI GGATC 2 cut(s) 230, 243
BspT107I GGYRCC 1 cut(s) 252
BssMI GATC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 49, 169
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 226
BstV1I GCAGC 2 cut(s) 79, 343
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 74
BsuRI GGCC 3 cut(s) 79, 204, 374
BtsCI GGATG 2 cut(s) 49, 169
Cfr13I GGNCC 1 cut(s) 202
CviAII CATG 3 cut(s) 153, 190, 308
CviJI RGCY 9 cut(s) 55, 79, 92, 138, 204, 274, 356, 374, 387
CviKI_1 RGCY 9 cut(s) 55, 79, 92, 138, 204, 274, 356, 374, 387
DdeI CTNAG 1 cut(s) 74
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 274
Eco147I AGGCCT 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
Eco81I CCTNAGG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 191
EcoT38I GRGCYC 1 cut(s) 276
FaeI CATG 3 cut(s) 156, 193, 311
FaiI YATR 5 cut(s) 141, 154, 191, 309, 321
FatI CATG 3 cut(s) 152, 189, 307
Fnu4HI GCNGC 3 cut(s) 93, 251, 357
FokI GGATG 2 cut(s) 56, 176
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 93, 251, 357
FspBI CTAG 1 cut(s) 108
GluI GCNGC 3 cut(s) 93, 251, 357
GsaI CCCAGC 1 cut(s) 391
HaeIII GGCC 3 cut(s) 79, 204, 374
Hin1II CATG 3 cut(s) 156, 193, 311
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 21, 244
Hpy188III TCNNGA 3 cut(s) 41, 108, 175
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 1 cut(s) 249
HpyCH4V TGCA 3 cut(s) 11, 95, 189
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 3 cut(s) 156, 193, 311
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 6 cut(s) 63, 93, 214, 227, 369, 373
Lsp1109I GCAGC 2 cut(s) 79, 343
MaeI CTAG 1 cut(s) 108
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 3 cut(s) 138, 214, 337
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 276
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 2 cut(s) 27, 96
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 1 cut(s) 113
MnlI CCTC 3 cut(s) 94, 325, 361
Mox20I TGGCCA 1 cut(s) 374
Mph1103I ATGCAT 1 cut(s) 191
MscI TGGCCA 1 cut(s) 374
Msp20I TGGCCA 1 cut(s) 374
MunI CAATTG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 353
NdeII GATC 1 cut(s) 235
NlaIII CATG 3 cut(s) 156, 193, 311
NlaIV GGNNCC 3 cut(s) 237, 254, 285
NsiI ATGCAT 1 cut(s) 191
NspI RCATGY 1 cut(s) 311
PceI AGGCCT 1 cut(s) 79
PciI ACATGT 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 56
PkrI GCNGC 3 cut(s) 94, 252, 358
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PscI ACATGT 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 387
PspN4I GGNNCC 3 cut(s) 237, 254, 285
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 235
SacI GAGCTC 1 cut(s) 276
SatI GCNGC 3 cut(s) 93, 251, 357
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 276
SetI ASST 7 cut(s) 38, 57, 94, 140, 276, 358, 372
SfcI CTRYAG 1 cut(s) 226
Sse9I AATT 2 cut(s) 27, 96
SseBI AGGCCT 1 cut(s) 79
SsiI CCGC 1 cut(s) 250
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 276
StuI AGGCCT 1 cut(s) 79
TasI AATT 2 cut(s) 27, 96
TauI GCSGC 1 cut(s) 253
TseI GCWGC 2 cut(s) 92, 356
TspDTI ATGAA 2 cut(s) 180, 206
TspGWI ACGGA 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 56
XapI RAATTY 1 cut(s) 27
XbaI TCTAGA 1 cut(s) 107
XceI RCATGY 1 cut(s) 311
XspI CTAG 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.