Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000466

Physical Location & Seq

Genomic Coordinates Reverse (-)

85401197 .. 85401964

Gene Structure 768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036831

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCGTTGGCGATTATTGTGGTAATTGTGACATGGATCGGTGCCATAGCTACTATTAAGTGGATATGGACTCTACTGAAGCATTGGTTCGGTTACATGGTTGAAAGGCGTGAGCCAATATCGCAGGATAATCAAGAATTGGTCGACATCGCTACTGAGCAAGTAAGGCCTGAGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGATGGGGGATCTCAGTGACTCTCCTGATCAGAGAAACGATGGCACCACCTCTGCCGCCGCACCGGCTGCTTCTTCTTCTTCTCTATCATCAGCTGTTGAGTGGAAGTATGATGTGTTTTTGAGTTTCAGGGGTCCTGACACTCGCAAGGGTATCACATTTGAACTATACGATCGACTGCAGAGGAGGGGAATTAAAGCATTCATGGATGATCGAGATCTTGAAGTAGGGGATGTTATTTCTCCAACTCTCTTAAGGGCAATTAGAGAATCAAGGTTTGCAATCGTTGTTCTCTCGCAAAATTATGCTTCTTCTACTTGGTGTTTGGAGGAACTTAGAGAGATTTGTCTATGCATGGAAGACAACAGGATTTTGCCACTTTTTTATCATGTTAATCCTACTGATGTTCGATATCAGAAGAGGAGTTTCGAAGATGCTTTCTCTAAGCATGAAACCTCTGGGCGACATGAATCAGAGAAGGTGAAGCAATGGAAAGCTGCTTTAAACAAAGTGGCCAATATCTCTGGGTGGAATACAGATGATCATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

256

Amino Acids

29.5

Weight (kDa)

4.83

Isoelectric Point (pI)

66.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	108 - 253	2.1e-45	TIR domain
TIR_2	PF13676	111 - 219	3.8e-17	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000466)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica	MD12G1125500.v1.1
prunus_persica	Prupe.2G112700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata	RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora	Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa	Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha	Rh1DG060500 Rh6BG033900
rosa_wichuraiana	Rw0G008150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	41, 260
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	2 cut(s)	273, 276
AclWI	GGATC	2 cut(s)	44, 234
AcoI	YGGCCR	1 cut(s)	729
AcuI	CTGAAG	1 cut(s)	98
AflII	CTTAAG	1 cut(s)	469
AgsI	TTSAA	3 cut(s)	104, 380, 440
AluBI	AGCT	3 cut(s)	50, 311, 713
AluI	AGCT	3 cut(s)	50, 311, 713
AlwI	GGATC	2 cut(s)	44, 234
AoxI	GGCC	2 cut(s)	167, 729
ApeKI	GCWGC	2 cut(s)	284, 713
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	709
AsuII	TTCGAA	1 cut(s)	645
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	731
BanI	GGYRCC	2 cut(s)	41, 260
BbsI	GAAGAC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	271, 700
BccI	CCATC	2 cut(s)	214, 251
BclI	TGATCA	2 cut(s)	244, 757
BfmI	CTRYAG	1 cut(s)	395
BfrI	CTTAAG	1 cut(s)	469
BglI	GCCNNNNNGGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	4 cut(s)	273, 276, 285, 714
BlsI	GCNGC	4 cut(s)	274, 277, 286, 715
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	3 cut(s)	43, 262, 351
BmsI	GCATC	1 cut(s)	640
BpiI	GAAGAC	1 cut(s)	582
Bpu14I	TTCGAA	1 cut(s)	645
BsaBI	GATNNNNATC	1 cut(s)	432
Bse118I	RCCGGY	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	710
Bse8I	GATNNNNATC	1 cut(s)	432
BseGI	GGATG	2 cut(s)	430, 454
BseJI	GATNNNNATC	1 cut(s)	432
BseMI	GCAATG	1 cut(s)	710
BseMII	CTCAG	3 cut(s)	147, 162, 244
BseRI	GAGGAG	2 cut(s)	415, 652
BseXI	GCAGC	2 cut(s)	271, 700
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	169, 731
BshNI	GGYRCC	2 cut(s)	41, 260
BsiEI	CGRYCG	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	2 cut(s)	169, 731
Bsp119I	TTCGAA	1 cut(s)	645
Bsp143I	GATC	7 cut(s)	36, 226, 244, 388, 427, 433, 757
BspACI	CCGC	2 cut(s)	273, 276
BspANI	GGCC	2 cut(s)	169, 731
BspCNI	CTCAG	3 cut(s)	148, 163, 243
BspLI	GGNNCC	3 cut(s)	43, 262, 351
BspMAI	CTGCAG	1 cut(s)	399
BspPI	GGATC	2 cut(s)	44, 234
BspT104I	TTCGAA	1 cut(s)	645
BspT107I	GGYRCC	2 cut(s)	41, 260
BspTI	CTTAAG	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	710
BsrFI	RCCGGY	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	280
BssMI	GATC	7 cut(s)	36, 226, 244, 388, 427, 433, 757
Bst6I	CTCTTC	1 cut(s)	629
BstAFI	CTTAAG	1 cut(s)	469
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	645
BstDEI	CTNAG	5 cut(s)	156, 171, 230, 551, 660
BstF5I	GGATG	2 cut(s)	430, 454
BstKTI	GATC	7 cut(s)	39, 229, 247, 391, 430, 436, 760
BstMBI	GATC	7 cut(s)	36, 226, 244, 388, 427, 433, 757
BstMCI	CGRYCG	1 cut(s)	391
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 166, 281, 284
BstSFI	CTRYAG	1 cut(s)	395
BstV1I	GCAGC	2 cut(s)	271, 700
BstV2I	GAAGAC	1 cut(s)	582
BstX2I	RGATCY	2 cut(s)	226, 433
BstYI	RGATCY	2 cut(s)	226, 433
BsuRI	GGCC	2 cut(s)	169, 731
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	430, 454
BtsIMutI	CAGTG	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	350
CviAII	CATG	7 cut(s)	33, 97, 421, 571, 605, 665, 683
CviJI	RGCY	7 cut(s)	50, 115, 169, 284, 311, 713, 731
CviKI_1	RGCY	7 cut(s)	50, 115, 169, 284, 311, 713, 731
DdeI	CTNAG	5 cut(s)	156, 171, 230, 551, 660
DpnI	GATC	7 cut(s)	38, 228, 246, 390, 429, 435, 759
DpnII	GATC	7 cut(s)	36, 226, 244, 388, 427, 433, 757
DraI	TTTAAA	1 cut(s)	720
EaeI	YGGCCR	1 cut(s)	729
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Eco147I	AGGCCT	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	629
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRV	GATATC	1 cut(s)	629
EcoT22I	ATGCAT	1 cut(s)	572
FaeI	CATG	7 cut(s)	36, 100, 424, 574, 608, 668, 686
FatI	CATG	7 cut(s)	32, 96, 420, 570, 604, 664, 682
FbaI	TGATCA	2 cut(s)	244, 757
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	273, 276, 285, 714
FokI	GGATG	2 cut(s)	437, 461
Fsp4HI	GCNGC	4 cut(s)	273, 276, 285, 714
GluI	GCNGC	4 cut(s)	273, 276, 285, 714
HaeIII	GGCC	2 cut(s)	169, 731
HapII	CCGG	1 cut(s)	281
Hin1II	CATG	7 cut(s)	36, 100, 424, 574, 608, 668, 686
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	4 cut(s)	70, 236, 485, 686
HpaII	CCGG	1 cut(s)	281
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	249, 633, 691
Hpy188III	TCNNGA	5 cut(s)	134, 242, 353, 431, 437
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	688
HpyCH4V	TGCA	3 cut(s)	397, 497, 570
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 166, 281, 284
HpyF3I	CTNAG	5 cut(s)	156, 171, 230, 551, 660
Hsp92II	CATG	7 cut(s)	36, 100, 424, 574, 608, 668, 686
Ksp22I	TGATCA	2 cut(s)	244, 757
Kzo9I	GATC	7 cut(s)	36, 226, 244, 388, 427, 433, 757
LpnPI	CCDG	9 cut(s)	110, 183, 255, 294, 331, 366, 568, 660, 726
Lsp1109I	GCAGC	2 cut(s)	271, 700
LweI	GCATC	1 cut(s)	640
MaeIII	GTNAC	3 cut(s)	28, 92, 233
MalI	GATC	7 cut(s)	38, 228, 246, 390, 429, 435, 759
MboI	GATC	7 cut(s)	36, 226, 244, 388, 427, 433, 757
MflI	RGATCY	2 cut(s)	226, 433
MlsI	TGGCCA	1 cut(s)	731
MluCI	AATT	5 cut(s)	24, 137, 408, 477, 517
MluNI	TGGCCA	1 cut(s)	731
MlyI	GAGTC	2 cut(s)	64, 230
MmeI	TCCRAC	1 cut(s)	485
MnlI	CCTC	6 cut(s)	277, 393, 396, 538, 630, 682
Mox20I	TGGCCA	1 cut(s)	731
Mph1103I	ATGCAT	1 cut(s)	572
MscI	TGGCCA	1 cut(s)	731
MseI	TTAA	5 cut(s)	57, 411, 470, 609, 719
Msp20I	TGGCCA	1 cut(s)	731
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	469
MspI	CCGG	1 cut(s)	281
Mva1269I	GAATGC	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	121, 166, 281, 284
NdeII	GATC	7 cut(s)	36, 226, 244, 388, 427, 433, 757
NlaIII	CATG	7 cut(s)	36, 100, 424, 574, 608, 668, 686
NlaIV	GGNNCC	3 cut(s)	43, 262, 351
NmuCI	GTSAC	2 cut(s)	28, 233
NsiI	ATGCAT	1 cut(s)	572
NspV	TTCGAA	1 cut(s)	645
PceI	AGGCCT	1 cut(s)	169
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	485, 686
PkrI	GCNGC	4 cut(s)	274, 277, 286, 715
Ple19I	CGATCG	1 cut(s)	391
PleI	GAGTC	2 cut(s)	64, 230
PpsI	GAGTC	2 cut(s)	64, 230
PpuMI	RGGWCCY	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	350
PspN4I	GGNNCC	3 cut(s)	43, 262, 351
PspPI	GGNCC	1 cut(s)	350
PspPPI	RGGWCCY	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	399
PsuI	RGATCY	2 cut(s)	226, 433
PvuI	CGATCG	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	311
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	5 cut(s)	57, 411, 470, 609, 719
SatI	GCNGC	4 cut(s)	273, 276, 285, 714
Sau3AI	GATC	7 cut(s)	36, 226, 244, 388, 427, 433, 757
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	2 cut(s)	64, 230
SetI	ASST	7 cut(s)	52, 269, 313, 494, 674, 699, 715
SfaNI	GCATC	1 cut(s)	640
SfcI	CTRYAG	1 cut(s)	395
SfuI	TTCGAA	1 cut(s)	645
SinI	GGWCC	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	5 cut(s)	24, 137, 408, 477, 517
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	2 cut(s)	273, 276
StuI	AGGCCT	1 cut(s)	169
TaqI	TCGA	5 cut(s)	144, 391, 430, 625, 645
TasI	AATT	5 cut(s)	24, 137, 408, 477, 517
TauI	GCSGC	2 cut(s)	275, 278
TfiI	GAWTC	2 cut(s)	485, 686
Tru1I	TTAA	5 cut(s)	57, 411, 470, 609, 719
Tru9I	TTAA	5 cut(s)	57, 411, 470, 609, 719
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	2 cut(s)	28, 233
TseI	GCWGC	2 cut(s)	284, 713
Tsp45I	GTSAC	2 cut(s)	28, 233
TspDTI	ATGAA	3 cut(s)	409, 681, 699
TspRI	CASTG	1 cut(s)	238
Vha464I	CTTAAG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	144
Zsp2I	ATGCAT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.