RLG00000036764

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000466
Physical Location & Seq
Reverse (-)
84259983 .. 84260680
698 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036764

Sequence Viewer

Length: 633 bp
ATGTTGTTGGCGATCATTGTGGTAATTGTGACATGGATCGGTTGCAAGGCCATTATTAAGTGCATAGGGACCCGAGTGGAGCGTTGGTTCAGTTATATGGTCCGAAAGTCGCAGGATAATCAAGTATTGGTTAACTTGGATACCTCTGAATCTCTTCCTTCATCATCAGCACCTCGTCCCTCGAAGTATGATGTGTTTTTGAGTTTCAGGGGTGCTGACACTCGCAAGGGGATTACAGTCGACATCCACGATCGACTAAAGGCGAGGGGAATTAAAACATTCATGGATGATCGAGATCTTGAAGTAGGGGATGCTATTTCTCCCACTCTCCTAAAGGCAATTGAAGAATCAAGGTTTGCAATTGTTGTTCTCTCGCGAGACTACGCTTCTTCTACTTGGTGTTTGGAGGAACTTACAAAGATCTGTGAGTGCATGGAAGATCATAACAGAATTCTTCCACTCTTTTATCACGTGGAGCCATCTGATGTTCGATTTCAGAAGAAAAGTTTTGAAGAAGCTTTCTCTAAACATGAAACCTCTAGGCGACACAAATCGGAGAAGATGAAGCAATGGAGAGATGCTTTAAACAAAGTGGCCTCTTTCTCTGGGTGGAATACACATGATTATAAGTAA

Protein Analysis

211

Amino Acids

24.3

Weight (kDa)

8.76

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 62 - 208 3.5e-46 TIR domain
TIR_2 PF13676 65 - 160 1.5e-18 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
AccI GTMKAC 1 cut(s) 240
AccII CGCG 1 cut(s) 376
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 450
AcvI CACGTG 1 cut(s) 472
AgsI TTSAA 3 cut(s) 302, 344, 512
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 1 cut(s) 44
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 2 cut(s) 48, 594
ApoI RAATTY 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 69, 100
AvaI CYCGRG 1 cut(s) 72
AvaII GGWCC 2 cut(s) 69, 100
BbrPI CACGTG 1 cut(s) 472
BccI CCATC 1 cut(s) 487
BciVI GTATCC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 1 cut(s) 540
BfuI GTATCC 1 cut(s) 133
BglII AGATCT 2 cut(s) 295, 420
Bme18I GGWCC 2 cut(s) 69, 100
BmeT110I CYCGRG 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 69, 100
BmiI GGNNCC 3 cut(s) 70, 71, 477
BmsI GCATC 2 cut(s) 301, 568
BsaAI YACGTR 1 cut(s) 472
BsaBI GATNNNNATC 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bse3DI GCAATG 1 cut(s) 575
Bse8I GATNNNNATC 1 cut(s) 294
BseGI GGATG 3 cut(s) 243, 292, 316
BseJI GATNNNNATC 1 cut(s) 294
BseMI GCAATG 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 376
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 2 cut(s) 50, 596
BsiEI CGRYCG 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 72
BslFI GGGAC 2 cut(s) 82, 162
BsmAI GTCTC 1 cut(s) 372
BsmFI GGGAC 2 cut(s) 82, 162
BsnI GGCC 2 cut(s) 50, 596
BsoBI CYCGRG 1 cut(s) 72
Bsp143I GATC 7 cut(s) 12, 36, 250, 289, 295, 420, 439
Bsp68I TCGCGA 1 cut(s) 376
BspANI GGCC 2 cut(s) 50, 596
BspFNI CGCG 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 70, 71, 477
BspPI GGATC 1 cut(s) 44
BsrDI GCAATG 1 cut(s) 575
BssMI GATC 7 cut(s) 12, 36, 250, 289, 295, 420, 439
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 159
BstBAI YACGTR 1 cut(s) 472
BstF5I GGATG 3 cut(s) 243, 292, 316
BstFNI CGCG 1 cut(s) 376
BstKTI GATC 7 cut(s) 15, 39, 253, 292, 298, 423, 442
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 7 cut(s) 12, 36, 250, 289, 295, 420, 439
BstMCI CGRYCG 1 cut(s) 253
BstUI CGCG 1 cut(s) 376
BstX2I RGATCY 2 cut(s) 295, 420
BstYI RGATCY 2 cut(s) 295, 420
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 2 cut(s) 50, 596
BtsCI GGATG 3 cut(s) 243, 292, 316
BtuMI TCGCGA 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 69, 100
CviAII CATG 5 cut(s) 33, 283, 433, 530, 620
CviJI RGCY 4 cut(s) 50, 478, 518, 596
CviKI_1 RGCY 4 cut(s) 50, 478, 518, 596
DpnI GATC 7 cut(s) 14, 38, 252, 291, 297, 422, 441
DpnII GATC 7 cut(s) 12, 36, 250, 289, 295, 420, 439
DraI TTTAAA 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47I GGWCC 2 cut(s) 69, 100
Eco72I CACGTG 1 cut(s) 472
Eco88I CYCGRG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 450
FaeI CATG 5 cut(s) 36, 286, 436, 533, 623
FaqI GGGAC 2 cut(s) 82, 162
FatI CATG 5 cut(s) 32, 282, 432, 529, 619
FblI GTMKAC 1 cut(s) 240
FokI GGATG 3 cut(s) 230, 299, 323
FspBI CTAG 1 cut(s) 540
HaeIII GGCC 2 cut(s) 50, 596
Hin1II CATG 5 cut(s) 36, 286, 436, 533, 623
HincII GTYRAC 2 cut(s) 133, 241
HindII GTYRAC 2 cut(s) 133, 241
HindIII AAGCTT 1 cut(s) 516
HinfI GANTC 2 cut(s) 149, 347
HpaI GTTAAC 1 cut(s) 133
Hpy166II GTNNAC 2 cut(s) 133, 241
Hpy188I TCNGA 5 cut(s) 104, 148, 484, 498, 556
Hpy188III TCNNGA 3 cut(s) 293, 299, 375
Hpy8I GTNNAC 2 cut(s) 133, 241
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 4 cut(s) 45, 63, 359, 432
HpySE526I ACGT 1 cut(s) 471
Hsp92II CATG 5 cut(s) 36, 286, 436, 533, 623
KflI GGGWCCC 1 cut(s) 69
KspAI GTTAAC 1 cut(s) 133
Kzo9I GATC 7 cut(s) 12, 36, 250, 289, 295, 420, 439
LmnI GCTCC 2 cut(s) 79, 475
LpnPI CCDG 3 cut(s) 98, 193, 591
LweI GCATC 2 cut(s) 301, 568
MaeI CTAG 1 cut(s) 540
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 1 cut(s) 28
MalI GATC 7 cut(s) 14, 38, 252, 291, 297, 422, 441
MboI GATC 7 cut(s) 12, 36, 250, 289, 295, 420, 439
MboII GAAGA 8 cut(s) 146, 356, 381, 446, 449, 511, 524, 571
MfeI CAATTG 2 cut(s) 339, 360
MflI RGATCY 2 cut(s) 295, 420
MluCI AATT 5 cut(s) 24, 270, 339, 360, 450
MnlI CCTC 7 cut(s) 154, 183, 190, 258, 400, 547, 607
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 4 cut(s) 57, 132, 273, 584
MunI CAATTG 2 cut(s) 339, 360
MvnI CGCG 1 cut(s) 376
NdeII GATC 7 cut(s) 12, 36, 250, 289, 295, 420, 439
NlaIII CATG 5 cut(s) 36, 286, 436, 533, 623
NlaIV GGNNCC 3 cut(s) 70, 71, 477
NmuCI GTSAC 1 cut(s) 28
NruI TCGCGA 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 2 cut(s) 149, 347
Ple19I CGATCG 1 cut(s) 253
PmaCI CACGTG 1 cut(s) 472
PmlI CACGTG 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 472
PpuMI RGGWCCY 1 cut(s) 69
PsiI TTATAA 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 69
PspCI CACGTG 1 cut(s) 472
PspN4I GGNNCC 3 cut(s) 70, 71, 477
PspPI GGNCC 2 cut(s) 69, 100
PspPPI RGGWCCY 1 cut(s) 69
PsuI RGATCY 2 cut(s) 295, 420
PvuI CGATCG 1 cut(s) 253
RruI TCGCGA 1 cut(s) 376
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 4 cut(s) 57, 132, 273, 584
Sau3AI GATC 7 cut(s) 12, 36, 250, 289, 295, 420, 439
Sau96I GGNCC 2 cut(s) 69, 100
SetI ASST 6 cut(s) 146, 175, 356, 474, 520, 539
SfaNI GCATC 2 cut(s) 301, 568
SinI GGWCC 2 cut(s) 69, 100
Sse9I AATT 5 cut(s) 24, 270, 339, 360, 450
SspMI CTAG 1 cut(s) 540
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 1 cut(s) 474
TaqI TCGA 5 cut(s) 182, 240, 253, 292, 490
TasI AATT 5 cut(s) 24, 270, 339, 360, 450
TfiI GAWTC 2 cut(s) 149, 347
Tru1I TTAA 4 cut(s) 57, 132, 273, 584
Tru9I TTAA 4 cut(s) 57, 132, 273, 584
TseFI GTSAC 1 cut(s) 28
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 4 cut(s) 150, 271, 546, 578
VpaK11BI GGWCC 2 cut(s) 69, 100
XapI RAATTY 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.