Rmu_sc0001226.1_g000014

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001226.1
Physical Location & Seq
Forward (+)
78343 .. 78858
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001226.1_g000014.1.cds

Sequence Viewer

Length: 516 bp
atggcctctgcatctcttccttcatcagttgaatcatcatcatcatcatcatcagctcgtccgtggatgtatgatgtgttcttgagtttcaggggtcctgacactcgaaggagcatcacatctgatctataccatcgactgcagaagaggggaattaaaacattcatggatgatccagatcttcaggtaggggatgtgatttctcccgctctcctaactgcaattgaaaaatcaaggtttgcaattgttgttctgttggaaaactatggtcattctacttggtgtttggaggaacttacaaagatctgtgagtgtatggaagacgacaacagaatttggccacttttttataatgtggaaccctctgttgtacggtaccggaagagcagttttggagaagctttcgataagcataaaagctctaggcgacacacatcacagaatgtgcagcggtggaatgatgctttaaacaaagtagccagtttctctgggtggcatacaaagaattttaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

171

Amino Acids

19.66

Weight (kDa)

8.79

Isoelectric Point (pI)

66.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 351
Acc65I GGTACC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 375
AccBSI CCGCTC 1 cut(s) 209
AciI CCGC 2 cut(s) 207, 451
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 2 cut(s) 333, 505
AcuI CTGAAG 1 cut(s) 167
AfaI GTAC 2 cut(s) 372, 377
AgsI TTSAA 2 cut(s) 32, 227
AluBI AGCT 3 cut(s) 56, 401, 420
AluI AGCT 3 cut(s) 56, 401, 420
AlwI GGATC 1 cut(s) 167
AoxI GGCC 2 cut(s) 3, 338
ApeKI GCWGC 1 cut(s) 448
ApoI RAATTY 2 cut(s) 333, 505
Asp718I GGTACC 1 cut(s) 375
AspS9I GGNCC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 95
BalI TGGCCA 1 cut(s) 340
BanI GGYRCC 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 460
BccI CCATC 1 cut(s) 141
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 140
BglII AGATCT 2 cut(s) 178, 303
BisI GCNGC 1 cut(s) 449
BlsI GCNGC 1 cut(s) 450
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 3 cut(s) 96, 360, 377
BmsI GCATC 3 cut(s) 20, 123, 451
BpiI GAAGAC 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 103
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 62
BsaWI WCCGGW 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 480
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 3 cut(s) 72, 175, 199
BseJI GATNNNNATC 1 cut(s) 177
BseNI ACTGG 1 cut(s) 480
BseXI GCAGC 1 cut(s) 460
BsgI GTGCAG 1 cut(s) 467
BshFI GGCC 2 cut(s) 5, 340
BshNI GGYRCC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 379
BsnI GGCC 2 cut(s) 5, 340
Bsp143I GATC 4 cut(s) 124, 172, 178, 303
BspACI CCGC 2 cut(s) 207, 451
BspANI GGCC 2 cut(s) 5, 340
BspLI GGNNCC 3 cut(s) 96, 360, 377
BspMAI CTGCAG 1 cut(s) 144
BspPI GGATC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 375
BsrBI CCGCTC 1 cut(s) 209
BsrI ACTGG 1 cut(s) 480
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 4 cut(s) 124, 172, 178, 303
Bst4CI ACNGT 1 cut(s) 375
Bst6I CTCTTC 3 cut(s) 21, 140, 377
BstDSI CCRYGG 1 cut(s) 62
BstF5I GGATG 3 cut(s) 72, 175, 199
BstKTI GATC 4 cut(s) 127, 175, 181, 306
BstMBI GATC 4 cut(s) 124, 172, 178, 303
BstSFI CTRYAG 1 cut(s) 140
BstV1I GCAGC 1 cut(s) 460
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 2 cut(s) 178, 303
BstYI RGATCY 2 cut(s) 178, 303
BsuRI GGCC 2 cut(s) 5, 340
BtgI CCRYGG 1 cut(s) 62
BtsCI GGATG 3 cut(s) 72, 175, 199
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 371, 376
CviAII CATG 1 cut(s) 166
CviJI RGCY 6 cut(s) 5, 56, 340, 401, 420, 479
CviKI_1 RGCY 6 cut(s) 5, 56, 340, 401, 420, 479
CviQI GTAC 2 cut(s) 371, 376
DpnI GATC 4 cut(s) 126, 174, 180, 305
DpnII GATC 4 cut(s) 124, 172, 178, 303
DraI TTTAAA 1 cut(s) 468
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 3 cut(s) 21, 140, 377
EarI CTCTTC 3 cut(s) 21, 140, 377
Eco47I GGWCC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 95
FaeI CATG 1 cut(s) 169
FaiI YATR 8 cut(s) 72, 130, 167, 267, 317, 351, 414, 498
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 449
FokI GGATG 3 cut(s) 79, 182, 206
Fsp4HI GCNGC 1 cut(s) 449
FspBI CTAG 1 cut(s) 423
GluI GCNGC 1 cut(s) 449
HaeIII GGCC 2 cut(s) 5, 340
HapII CCGG 1 cut(s) 379
Hin1II CATG 1 cut(s) 169
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 1 cut(s) 32
HpaII CCGG 1 cut(s) 379
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 82, 98, 176
HpyAV CCTTC 2 cut(s) 30, 102
HpyCH4III ACNGT 1 cut(s) 375
HpyCH4V TGCA 5 cut(s) 11, 142, 221, 242, 448
Hsp92II CATG 1 cut(s) 169
KpnI GGTACC 1 cut(s) 379
Kzo9I GATC 4 cut(s) 124, 172, 178, 303
LguI GCTCTTC 1 cut(s) 377
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 7 cut(s) 76, 111, 170, 189, 392, 474, 493
Lsp1109I GCAGC 1 cut(s) 460
LweI GCATC 3 cut(s) 20, 123, 451
MaeI CTAG 1 cut(s) 423
MalI GATC 4 cut(s) 126, 174, 180, 305
MbiI CCGCTC 1 cut(s) 209
MboI GATC 4 cut(s) 124, 172, 178, 303
MboII GAAGA 5 cut(s) 8, 157, 173, 332, 394
MfeI CAATTG 2 cut(s) 222, 243
MflI RGATCY 2 cut(s) 178, 303
MlsI TGGCCA 1 cut(s) 340
MluCI AATT 5 cut(s) 153, 222, 243, 333, 505
MluNI TGGCCA 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 4 cut(s) 16, 141, 283, 373
Mox20I TGGCCA 1 cut(s) 340
MscI TGGCCA 1 cut(s) 340
MseI TTAA 3 cut(s) 156, 467, 510
Msp20I TGGCCA 1 cut(s) 340
MspA1I CMGCKG 1 cut(s) 451
MspI CCGG 1 cut(s) 379
MunI CAATTG 2 cut(s) 222, 243
NdeII GATC 4 cut(s) 124, 172, 178, 303
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 3 cut(s) 96, 360, 377
PciSI GCTCTTC 1 cut(s) 377
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 450
PpuMI RGGWCCY 1 cut(s) 95
PsiI TTATAA 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 95
PspN4I GGNNCC 3 cut(s) 96, 360, 377
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PsrI GAACNNNNNNTAC 2 cut(s) 62, 94
PstI CTGCAG 1 cut(s) 144
PsuI RGATCY 2 cut(s) 178, 303
RsaI GTAC 2 cut(s) 372, 377
RsaNI GTAC 2 cut(s) 371, 376
SapI GCTCTTC 1 cut(s) 377
SaqAI TTAA 3 cut(s) 156, 467, 510
SatI GCNGC 1 cut(s) 449
Sau3AI GATC 4 cut(s) 124, 172, 178, 303
Sau96I GGNCC 1 cut(s) 95
SetI ASST 5 cut(s) 58, 189, 239, 403, 422
SfaNI GCATC 3 cut(s) 20, 123, 451
SfcI CTRYAG 1 cut(s) 140
SinI GGWCC 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 5 cut(s) 153, 222, 243, 333, 505
SsiI CCGC 2 cut(s) 207, 451
SspMI CTAG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 375
TaqI TCGA 3 cut(s) 106, 136, 405
TasI AATT 5 cut(s) 153, 222, 243, 333, 505
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 3 cut(s) 156, 467, 510
Tru9I TTAA 3 cut(s) 156, 467, 510
TseI GCWGC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 12, 154
TspGWI ACGGA 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 2 cut(s) 333, 505
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.