RchiOBHm_Chr1g0328961

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000466
Physical Location & Seq
Reverse (-)
18404972 .. 18405616
645 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55831

Sequence Viewer

Length: 324 bp
ATGGATGACGCAGAGCTTGAGAAAGGAAAATCCATTAGCCCTGAACTTTTAGCTGAAATTGAGGACTCTAGATATGCGATTGTCATTCTCTCACTCAACTATGCTTGTTCGTCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCATGAAAGAGATGGGCCAACAAGTCCTCCCCGTCTTCTACTGGGTGGATCCTTCTGATGTGCGGCACCAAAGGGGACATTTTGAGCTCAAAAGGAAAACCCAAGTAGATGTGGAAGTAAGGGAACATGAAGAAGTTTATGGGCAGACGCAATGCGTGGAGAGCTGCTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

107

Amino Acids

12.4

Weight (kDa)

4.69

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 82 1.2e-28 TIR domain
TIR_2 PF13676 2 - 78 3.2e-08 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 213
AciI CCGC 1 cut(s) 211
AclWI GGATC 2 cut(s) 191, 204
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 4 cut(s) 16, 53, 235, 312
AluI AGCT 4 cut(s) 16, 53, 235, 312
Alw21I GWGCWC 1 cut(s) 237
AlwI GGATC 2 cut(s) 191, 204
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 163
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 154
BfaI CTAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 212, 313
BlsI GCNGC 2 cut(s) 213, 314
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 2 cut(s) 198, 215
BmrI ACTGGG 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bse1I ACTGG 1 cut(s) 194
Bse3DI GCAATG 1 cut(s) 305
BseGI GGATG 2 cut(s) 10, 130
BseMI GCAATG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 237
BslFI GGGAC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 198, 215
BspPI GGATC 2 cut(s) 191, 204
BspT107I GGYRCC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 305
BsrI ACTGG 1 cut(s) 194
BssMI GATC 1 cut(s) 196
BstF5I GGATG 2 cut(s) 10, 130
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 309, 318
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 2 cut(s) 10, 130
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 2 cut(s) 17, 304
CviAII CATG 3 cut(s) 114, 151, 275
CviJI RGCY 7 cut(s) 16, 39, 53, 165, 235, 312, 321
CviKI_1 RGCY 7 cut(s) 16, 39, 53, 165, 235, 312, 321
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 237
FaeI CATG 3 cut(s) 117, 154, 278
FaiI YATR 6 cut(s) 75, 102, 115, 152, 276, 288
FaqI GGGAC 1 cut(s) 237
FatI CATG 3 cut(s) 113, 150, 274
Fnu4HI GCNGC 2 cut(s) 212, 313
FokI GGATG 2 cut(s) 17, 137
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 2 cut(s) 212, 313
FspBI CTAG 1 cut(s) 69
GluI GCNGC 2 cut(s) 212, 313
HaeIII GGCC 1 cut(s) 165
HgaI GACGC 2 cut(s) 17, 304
Hin1II CATG 3 cut(s) 117, 154, 278
HinfI GANTC 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 69, 136
HpyAV CCTTC 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 309, 318
Hsp92II CATG 3 cut(s) 117, 154, 278
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 2 cut(s) 54, 175
Lsp1109I GCAGC 1 cut(s) 299
MaeI CTAG 1 cut(s) 69
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 2 cut(s) 175, 290
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 2 cut(s) 55, 185
Mph1103I ATGCAT 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 309, 318
NdeII GATC 1 cut(s) 196
NlaIII CATG 3 cut(s) 117, 154, 278
NlaIV GGNNCC 2 cut(s) 198, 215
NsiI ATGCAT 1 cut(s) 152
PkrI GCNGC 2 cut(s) 213, 314
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 198, 215
PspPI GGNCC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 196
SacI GAGCTC 1 cut(s) 237
SatI GCNGC 2 cut(s) 212, 313
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 237
SetI ASST 4 cut(s) 18, 55, 237, 314
SmlI CTYRAG 1 cut(s) 17
SmoI CTYRAG 1 cut(s) 17
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 211
SspMI CTAG 1 cut(s) 69
SstI GAGCTC 1 cut(s) 237
TasI AATT 1 cut(s) 57
TauI GCSGC 1 cut(s) 214
TseI GCWGC 1 cut(s) 312
TspDTI ATGAA 3 cut(s) 141, 167, 291
XbaI TCTAGA 1 cut(s) 68
XspI CTAG 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.