RLG00000030348

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000466
Physical Location & Seq
Forward (+)
59895708 .. 59896664
957 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030348

Sequence Viewer

Length: 688 bp
ATGGCGTCAACCTCTTCTCGTCGTCAATGGAAATACGATGTGTTTCTAAGTTTCAGGGGGGAAGATACCCGCAATAATTTTACCGATCATCTGTATTCTACACTAAATCAGAGAGGAATTCTCAGCTTTCGGGATGACCCAGAGCTTGAGAAAGGAAAATCCATTAGGCCCGAACTTTTAGCTGCAATTGAGGAATCTAGATTTGCGATTGTCATTCTCTCATGGAGATATGGTTCTTCGTCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCATGAAAGACATGGGCCAACAAGTCCTCCCCGTCTTCTACTGGGTGGATCCTTCTGATGTGCGGCACCAAAGGCGAAGTTTTGAGCTCAAAGTAAGGGAACCCCAAGTAGAAGTAAGGGAACATGAAGAAGTTTATAGGAAGTTTAATGAGGACAGACTAAATGCCTGGAGAGATGCTTTGACTGACGTCGCCAATCTTTCTGGCTGGGATTTCAAGAGTAATCAATCTGGTACAAAAATAATTGAGGATATTGTTAACCATATACTAAAGAAGTCCGTGAATACATCTTCAAGTGTTGACAAGGGCTTCATAGGAATGGATTCCCGCGTTGATGATTTAATAAGCAATTACATATATCCACAGCTTTGTGGGGTGCGTTTTATAGGGATCCATGGCATGCGGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

229

Amino Acids

26.69

Weight (kDa)

6.53

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 191 1.4e-49 TIR domain
TIR_2 PF13676 14 - 107 1.4e-13 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 342
AccII CGCG 1 cut(s) 606
AciI CCGC 4 cut(s) 70, 340, 604, 679
AclWI GGATC 4 cut(s) 320, 333, 661, 674
AcsI RAATTY 1 cut(s) 117
AcyI GRCGYC 2 cut(s) 5, 465
AfaI GTAC 1 cut(s) 511
AgsI TTSAA 3 cut(s) 275, 493, 570
AjnI CCWGG 1 cut(s) 443
AloI GAACNNNNNNTCC 2 cut(s) 217, 249
AluBI AGCT 5 cut(s) 126, 145, 182, 364, 643
AluI AGCT 5 cut(s) 126, 145, 182, 364, 643
Alw21I GWGCWC 1 cut(s) 366
AlwI GGATC 4 cut(s) 320, 333, 661, 674
AoxI GGCC 2 cut(s) 167, 292
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 168, 292
BamHI GGATCC 2 cut(s) 325, 666
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 445
BfaI CTAG 1 cut(s) 198
BisI GCNGC 2 cut(s) 183, 341
BlsI GCNGC 2 cut(s) 184, 342
Bme1390I CCNGG 1 cut(s) 445
BmgT120I GGNCC 2 cut(s) 168, 292
BmiI GGNNCC 4 cut(s) 327, 344, 378, 668
BmrFI CCNGG 1 cut(s) 445
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 442
BmuI ACTGGG 1 cut(s) 328
BoxI GACNNNNGTC 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 304
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 167
BsaHI GRCGYC 2 cut(s) 5, 465
BsaJI CCNNGG 1 cut(s) 670
BsaXI ACNNNNNCTCC 4 cut(s) 217, 247, 288, 318
Bse1I ACTGG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 670
BseGI GGATG 2 cut(s) 139, 259
BseMII CTCAG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 2 cut(s) 169, 294
BshNI GGYRCC 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 366
BsnI GGCC 2 cut(s) 169, 294
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 3 cut(s) 85, 325, 666
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 4 cut(s) 70, 340, 604, 679
BspANI GGCC 2 cut(s) 169, 294
BspCNI CTCAG 1 cut(s) 135
BspFNI CGCG 1 cut(s) 606
BspLI GGNNCC 4 cut(s) 327, 344, 378, 668
BspPI GGATC 4 cut(s) 320, 333, 661, 674
BspT107I GGYRCC 1 cut(s) 342
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 670
BssMI GATC 3 cut(s) 85, 325, 666
BssNI GRCGYC 2 cut(s) 5, 465
BssT1I CCWWGG 1 cut(s) 670
Bst2UI CCWGG 1 cut(s) 445
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 2 cut(s) 5, 465
BstC8I GCNNGC 1 cut(s) 677
BstDEI CTNAG 2 cut(s) 47, 122
BstDSI CCRYGG 1 cut(s) 670
BstF5I GGATG 2 cut(s) 139, 259
BstFNI CGCG 1 cut(s) 606
BstKTI GATC 3 cut(s) 88, 328, 669
BstMBI GATC 3 cut(s) 85, 325, 666
BstMWI GCNNNNNNNGC 2 cut(s) 349, 681
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 1 cut(s) 679
BstPAI GACNNNNGTC 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 443
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 325, 666
BstYI RGATCY 2 cut(s) 325, 666
BsuRI GGCC 2 cut(s) 169, 294
BtgI CCRYGG 1 cut(s) 670
BtsCI GGATG 2 cut(s) 139, 259
Cac8I GCNNGC 1 cut(s) 677
Cfr13I GGNCC 2 cut(s) 168, 292
Csp6I GTAC 1 cut(s) 510
CviAII CATG 7 cut(s) 222, 243, 280, 289, 401, 671, 676
CviJI RGCY 9 cut(s) 126, 145, 169, 182, 294, 364, 483, 585, 643
CviKI_1 RGCY 9 cut(s) 126, 145, 169, 182, 294, 364, 483, 585, 643
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 2 cut(s) 47, 122
DpnI GATC 3 cut(s) 87, 327, 668
DpnII GATC 3 cut(s) 85, 325, 666
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 670
Eco24I GRGCYC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 364
EcoICRI GAGCTC 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 670
EcoT22I ATGCAT 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 670
FaeI CATG 7 cut(s) 225, 246, 283, 292, 404, 674, 679
FatI CATG 7 cut(s) 221, 242, 279, 288, 400, 670, 675
FauI CCCGC 3 cut(s) 77, 611, 672
Fnu4HI GCNGC 2 cut(s) 183, 341
FokI GGATG 2 cut(s) 146, 266
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 2 cut(s) 183, 341
FspBI CTAG 1 cut(s) 198
GluI GCNGC 2 cut(s) 183, 341
GsaI CCCAGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 2 cut(s) 169, 294
Hin1I GRCGYC 2 cut(s) 5, 465
Hin1II CATG 7 cut(s) 225, 246, 283, 292, 404, 674, 679
HincII GTYRAC 3 cut(s) 9, 535, 577
HindII GTYRAC 3 cut(s) 9, 535, 577
HinfI GANTC 2 cut(s) 194, 599
HpaI GTTAAC 1 cut(s) 535
Hpy166II GTNNAC 3 cut(s) 9, 535, 577
Hpy188I TCNGA 2 cut(s) 111, 334
Hpy188III TCNNGA 4 cut(s) 131, 198, 265, 493
Hpy8I GTNNAC 3 cut(s) 9, 535, 577
Hpy99I CGWCG 2 cut(s) 24, 470
HpyAV CCTTC 1 cut(s) 339
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 2 cut(s) 185, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 349, 681
HpyF3I CTNAG 2 cut(s) 47, 122
HpySE526I ACGT 1 cut(s) 465
Hsp92I GRCGYC 2 cut(s) 5, 465
Hsp92II CATG 7 cut(s) 225, 246, 283, 292, 404, 674, 679
KspAI GTTAAC 1 cut(s) 535
Kzo9I GATC 3 cut(s) 85, 325, 666
LpnPI CCDG 8 cut(s) 40, 153, 304, 430, 457, 465, 469, 492
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 442
MaeI CTAG 1 cut(s) 198
MaeII ACGT 1 cut(s) 465
MalI GATC 3 cut(s) 87, 327, 668
MboI GATC 3 cut(s) 85, 325, 666
MboII GAAGA 6 cut(s) 6, 74, 228, 304, 416, 558
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 2 cut(s) 325, 666
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 5 cut(s) 76, 117, 186, 519, 625
MnlI CCTC 6 cut(s) 22, 107, 184, 314, 421, 517
Mph1103I ATGCAT 1 cut(s) 281
MroXI GAANNNNTTC 1 cut(s) 598
MseI TTAA 3 cut(s) 423, 534, 617
MslI CAYNNNNRTG 1 cut(s) 593
MspR9I CCNGG 1 cut(s) 445
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 445
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 2 cut(s) 349, 681
NcoI CCATGG 1 cut(s) 670
NdeII GATC 3 cut(s) 85, 325, 666
NlaIII CATG 7 cut(s) 225, 246, 283, 292, 404, 674, 679
NlaIV GGNNCC 4 cut(s) 327, 344, 378, 668
NsiI ATGCAT 1 cut(s) 281
NspI RCATGY 1 cut(s) 679
PaeI GCATGC 1 cut(s) 679
PdmI GAANNNNTTC 1 cut(s) 598
PfeI GAWTC 2 cut(s) 194, 599
PkrI GCNGC 2 cut(s) 184, 342
PshAI GACNNNNGTC 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 483
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 4 cut(s) 327, 344, 378, 668
PspPI GGNCC 2 cut(s) 168, 292
PsuI RGATCY 2 cut(s) 325, 666
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
RseI CAYNNNNRTG 1 cut(s) 593
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 3 cut(s) 423, 534, 617
SatI GCNGC 2 cut(s) 183, 341
Sau3AI GATC 3 cut(s) 85, 325, 666
Sau96I GGNCC 2 cut(s) 168, 292
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 1 cut(s) 366
SetI ASST 7 cut(s) 14, 128, 147, 184, 366, 468, 645
SfaNI GCATC 1 cut(s) 442
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
SphI GCATGC 1 cut(s) 679
Sse9I AATT 5 cut(s) 76, 117, 186, 519, 625
SsiI CCGC 4 cut(s) 70, 340, 604, 679
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 1 cut(s) 670
TaiI ACGT 1 cut(s) 468
TasI AATT 5 cut(s) 76, 117, 186, 519, 625
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 2 cut(s) 194, 599
Tru1I TTAA 3 cut(s) 423, 534, 617
Tru9I TTAA 3 cut(s) 423, 534, 617
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 270, 296, 417, 577
TspGWI ACGGA 1 cut(s) 544
XapI RAATTY 1 cut(s) 117
XbaI TCTAGA 1 cut(s) 197
XceI RCATGY 1 cut(s) 679
XmnI GAANNNNTTC 1 cut(s) 598
XspI CTAG 1 cut(s) 198
ZraI GACGTC 1 cut(s) 466
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.