Rmu_sc0000588.1_g000050

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000588.1
OG0000466
Physical Location & Seq
Reverse (-)
193019 .. 193819
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000588.1_g000050.1.cds

Sequence Viewer

Length: 588 bp
atgatgatggaactgataaagaagaagacgatgatagaacctggaaataagaagaagcgaaggaaagaagcggtttttctattgtgcagcgcgagcaccgttcgtcaagtgctggatgaccgagagcttgaggaaggaattctcaactttcgggatgaccgagaacttttagctgcaatcgagcagtctagatctgcgattgtcattctctcacccaactatttatatgcttattcgtcatggtgcttggatgaactcgtcaagattattcaatgcatgaatgagatggcccaacaagtcttccccgtcttctacttggtggatccttctgatgtgcggcaccaaaggggaagttttgagctcaaagtaagggaacatgacgaagtttatgggcagaataatgaggacagactaaatgcgtggacagctgctttgacacaggtcgccaatctttctggctgggattacaacaattatcaggaagtctcctgcctccatactactcataccttaatatgtttccttgctaaagtagatatagatattcaatcccattcttttgagagcaggataatctcttatttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

195

Amino Acids

22.74

Weight (kDa)

5.41

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 339
AccII CGCG 1 cut(s) 92
AciI CCGC 2 cut(s) 71, 337
AclWI GGATC 2 cut(s) 317, 330
AcsI RAATTY 1 cut(s) 138
AgsI TTSAA 2 cut(s) 272, 548
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 4 cut(s) 127, 173, 361, 428
AluI AGCT 4 cut(s) 127, 173, 361, 428
Alw21I GWGCWC 2 cut(s) 98, 363
Alw26I GTCTC 1 cut(s) 490
AlwI GGATC 2 cut(s) 317, 330
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 3 cut(s) 87, 173, 428
ApoI RAATTY 1 cut(s) 138
ArsI GACNNNNNNTTYG 2 cut(s) 415, 447
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 204
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 363
BbsI GAAGAC 3 cut(s) 32, 292, 301
Bbv12I GWGCWC 2 cut(s) 98, 363
BbvI GCAGC 3 cut(s) 99, 160, 415
BccI CCATC 1 cut(s) 280
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 490
BfaI CTAG 1 cut(s) 189
BglII AGATCT 1 cut(s) 191
BisI GCNGC 4 cut(s) 88, 174, 338, 429
BlsI GCNGC 4 cut(s) 89, 175, 339, 430
Bme1390I CCNGG 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 2 cut(s) 324, 341
BmrFI CCNGG 1 cut(s) 42
BoxI GACNNNNGTC 1 cut(s) 440
BpiI GAAGAC 3 cut(s) 32, 292, 301
BpuEI CTTGAG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 42
BseGI GGATG 3 cut(s) 121, 160, 256
BseXI GCAGC 3 cut(s) 99, 160, 415
BseYI CCCAGC 1 cut(s) 459
BsgI GTGCAG 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 290
BshNI GGYRCC 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 98, 363
BsmAI GTCTC 1 cut(s) 490
BsnI GGCC 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 98, 363
Bsp143I GATC 2 cut(s) 191, 322
BspACI CCGC 2 cut(s) 71, 337
BspANI GGCC 1 cut(s) 290
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 324, 341
BspPI GGATC 2 cut(s) 317, 330
BspT107I GGYRCC 1 cut(s) 339
BssMI GATC 2 cut(s) 191, 322
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 94
BstF5I GGATG 3 cut(s) 121, 160, 256
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 194, 325
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 2 cut(s) 191, 322
BstMWI GCNNNNNNNGC 2 cut(s) 93, 425
BstNI CCWGG 1 cut(s) 42
BstPAI GACNNNNGTC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 40
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 99, 160, 415
BstV2I GAAGAC 3 cut(s) 32, 292, 301
BstX2I RGATCY 2 cut(s) 191, 322
BstYI RGATCY 2 cut(s) 191, 322
BsuRI GGCC 1 cut(s) 290
BtsCI GGATG 3 cut(s) 121, 160, 256
Cac8I GCNNGC 1 cut(s) 94
CfoI GCGC 1 cut(s) 92
Cfr13I GGNCC 1 cut(s) 289
CviAII CATG 3 cut(s) 240, 277, 377
CviJI RGCY 6 cut(s) 127, 173, 290, 361, 428, 459
CviKI_1 RGCY 6 cut(s) 127, 173, 290, 361, 428, 459
DpnI GATC 2 cut(s) 193, 324
DpnII GATC 2 cut(s) 191, 322
Ecl136II GAGCTC 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 361
EcoICRI GAGCTC 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 3 cut(s) 243, 280, 380
FatI CATG 3 cut(s) 239, 276, 376
Fnu4HI GCNGC 4 cut(s) 88, 174, 338, 429
FokI GGATG 3 cut(s) 128, 167, 263
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 4 cut(s) 88, 174, 338, 429
FspBI CTAG 1 cut(s) 189
GlaI GCGC 1 cut(s) 91
GluI GCNGC 4 cut(s) 88, 174, 338, 429
GsaI CCCAGC 1 cut(s) 463
HaeIII GGCC 1 cut(s) 290
HhaI GCGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 243, 280, 380
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 4 cut(s) 152, 189, 262, 479
Hpy8I GTNNAC 1 cut(s) 423
HpyAV CCTTC 3 cut(s) 54, 128, 336
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 87, 176, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 425
Hsp92II CATG 3 cut(s) 243, 280, 380
HspAI GCGC 1 cut(s) 90
Kzo9I GATC 2 cut(s) 191, 322
LpnPI CCDG 9 cut(s) 27, 54, 98, 425, 441, 445, 464, 502, 553
Lsp1109I GCAGC 3 cut(s) 99, 160, 415
MaeI CTAG 1 cut(s) 189
MalI GATC 2 cut(s) 193, 324
MboI GATC 2 cut(s) 191, 322
MboII GAAGA 5 cut(s) 34, 37, 64, 292, 301
MflI RGATCY 2 cut(s) 191, 322
MhlI GDGCHC 2 cut(s) 98, 363
MluCI AATT 2 cut(s) 138, 472
MnlI CCTC 3 cut(s) 124, 397, 503
Mph1103I ATGCAT 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 2 cut(s) 512, 586
MspA1I CMGCKG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 93, 425
NdeII GATC 2 cut(s) 191, 322
NlaIII CATG 3 cut(s) 243, 280, 380
NlaIV GGNNCC 2 cut(s) 324, 341
NsiI ATGCAT 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 138
PkrI GCNGC 4 cut(s) 89, 175, 339, 430
PshAI GACNNNNGTC 1 cut(s) 440
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 459
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 324, 341
PspPI GGNCC 1 cut(s) 289
PsuI RGATCY 2 cut(s) 191, 322
PvuII CAGCTG 1 cut(s) 428
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 512, 586
SatI GCNGC 4 cut(s) 88, 174, 338, 429
Sau3AI GATC 2 cut(s) 191, 322
Sau96I GGNCC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 2 cut(s) 98, 363
SetI ASST 7 cut(s) 43, 129, 175, 363, 430, 444, 512
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 2 cut(s) 138, 472
SsiI CCGC 2 cut(s) 71, 337
SspMI CTAG 1 cut(s) 189
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 180
TaqII GACCGA 2 cut(s) 135, 174
TasI AATT 2 cut(s) 138, 472
TauI GCSGC 1 cut(s) 340
Tru1I TTAA 2 cut(s) 512, 586
Tru9I TTAA 2 cut(s) 512, 586
TseI GCWGC 3 cut(s) 87, 173, 428
TspDTI ATGAA 2 cut(s) 267, 293
XapI RAATTY 1 cut(s) 138
XbaI TCTAGA 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 189
Zsp2I ATGCAT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.