RchiOBHm_Chr1g0322841

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000466
Physical Location & Seq
Reverse (-)
10251392 .. 10252178
787 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55281

Sequence Viewer

Length: 537 bp
ATGGCGTCAACCTCTTCTCGTCGTCCATGGAAATACGATGTGTTTCTAAGTTTCAGGGGGGAAGATACCCGCAATAATTTTACCGATCATCTGTATTCTACACTAAATCAGAGAGGAATTCTCACCTTTCGGGATGACCCAGAGCTTGAAAAAGGAAAATCCATTGGGCCTGAACTTTTTGCTGCAATTGAGCAGTCCAGATGTGCGATTGTCATTCTCTCACCCAGATATGCTGAGTCGTCATGGTGCTTGGATGAACTCGTCAAGATTATTCAATGCATGAAAAGGGGGGGCCAACAAGTCCTCCCCGTCTTCTACGGGGTGGATCCTTCTGAAGTGCGGCACCAAAGGGGAAGTTTTGAGCTCAAAAGAGAAACCCAAGTAGAAGTGAAAGTAAGGGAACATGAAGAAGTCTATACGAAGAACGGGGACAGACTAAATGCCTGGAGAGCTGCTTTGACACAAGTCGCCAATCTTTCTGGCTGGGATGGCGGGAATTATCGGAGTGGAGAACAAAAATTGTTAATCATATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

178

Amino Acids

20.51

Weight (kDa)

7.71

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 166 1.4e-47 TIR domain
TIR_2 PF13676 14 - 119 4.6e-17 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 342
AciI CCGC 3 cut(s) 70, 340, 492
AclWI GGATC 2 cut(s) 320, 333
AcsI RAATTY 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 354
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 2 cut(s) 149, 275
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 3 cut(s) 145, 364, 452
AluI AGCT 3 cut(s) 145, 364, 452
Alw21I GWGCWC 1 cut(s) 366
AlwI GGATC 2 cut(s) 320, 333
AoxI GGCC 2 cut(s) 167, 292
ApeKI GCWGC 2 cut(s) 182, 452
ApoI RAATTY 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 167, 292
AsuHPI GGTGA 2 cut(s) 115, 213
BamHI GGATCC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 169, 439
BccI CCATC 1 cut(s) 482
BciT130I CCWGG 1 cut(s) 445
BisI GCNGC 3 cut(s) 183, 341, 453
BlsI GCNGC 3 cut(s) 184, 342, 454
Bme1390I CCNGG 1 cut(s) 445
BmgT120I GGNCC 2 cut(s) 167, 292
BmiI GGNNCC 3 cut(s) 293, 327, 344
BmrFI CCNGG 1 cut(s) 445
BoxI GACNNNNGTC 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 304
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpmI CTGGAG 1 cut(s) 466
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 3 cut(s) 139, 259, 493
BseMII CTCAG 1 cut(s) 225
BseXI GCAGC 2 cut(s) 169, 439
BseYI CCCAGC 1 cut(s) 483
BshFI GGCC 2 cut(s) 169, 294
BshNI GGYRCC 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 366
BslFI GGGAC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 2 cut(s) 169, 294
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 85, 325
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 3 cut(s) 70, 340, 492
BspANI GGCC 2 cut(s) 169, 294
BspCNI CTCAG 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 293, 327, 344
BspPI GGATC 2 cut(s) 320, 333
BspT107I GGYRCC 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 85, 325
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 445
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 47, 234
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 3 cut(s) 139, 259, 493
BstKTI GATC 2 cut(s) 88, 328
BstMBI GATC 2 cut(s) 85, 325
BstMWI GCNNNNNNNGC 2 cut(s) 449, 489
BstNI CCWGG 1 cut(s) 445
BstPAI GACNNNNGTC 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 443
BstV1I GCAGC 2 cut(s) 169, 439
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
BsuRI GGCC 2 cut(s) 169, 294
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 3 cut(s) 139, 259, 493
Cfr13I GGNCC 2 cut(s) 167, 292
CviAII CATG 4 cut(s) 27, 243, 280, 404
CviJI RGCY 6 cut(s) 145, 169, 294, 364, 452, 483
CviKI_1 RGCY 6 cut(s) 145, 169, 294, 364, 452, 483
DdeI CTNAG 2 cut(s) 47, 234
DpnI GATC 2 cut(s) 87, 327
DpnII GATC 2 cut(s) 85, 325
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 364
Eco130I CCWWGG 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 4 cut(s) 30, 246, 283, 407
FaiI YATR 8 cut(s) 28, 231, 244, 281, 405, 417, 530, 532
FaqI GGGAC 1 cut(s) 443
FatI CATG 4 cut(s) 26, 242, 279, 403
FauI CCCGC 2 cut(s) 77, 485
Fnu4HI GCNGC 3 cut(s) 183, 341, 453
FokI GGATG 3 cut(s) 146, 266, 500
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 3 cut(s) 183, 341, 453
GluI GCNGC 3 cut(s) 183, 341, 453
GsaI CCCAGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 2 cut(s) 169, 294
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 30, 246, 283, 407
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 1 cut(s) 236
HphI GGTGA 2 cut(s) 115, 213
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 111, 334, 504
Hpy188III TCNNGA 3 cut(s) 131, 198, 265
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 339
HpyCH4V TGCA 2 cut(s) 185, 279
HpyF10VI GCNNNNNNNGC 2 cut(s) 449, 489
HpyF3I CTNAG 2 cut(s) 47, 234
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 30, 246, 283, 407
Kzo9I GATC 2 cut(s) 85, 325
LpnPI CCDG 9 cut(s) 40, 153, 183, 211, 238, 430, 457, 465, 469
Lsp1109I GCAGC 2 cut(s) 169, 439
MalI GATC 2 cut(s) 87, 327
MboI GATC 2 cut(s) 85, 325
MboII GAAGA 5 cut(s) 6, 74, 304, 419, 433
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 5 cut(s) 76, 117, 186, 496, 518
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 3 cut(s) 22, 107, 314
Mph1103I ATGCAT 1 cut(s) 281
MseI TTAA 1 cut(s) 524
MspR9I CCNGG 1 cut(s) 445
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 2 cut(s) 449, 489
NcoI CCATGG 1 cut(s) 26
NdeII GATC 2 cut(s) 85, 325
NlaIII CATG 4 cut(s) 30, 246, 283, 407
NlaIV GGNNCC 3 cut(s) 293, 327, 344
NsiI ATGCAT 1 cut(s) 281
PkrI GCNGC 3 cut(s) 184, 342, 454
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PshAI GACNNNNGTC 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 443
PspFI CCCAGC 1 cut(s) 483
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 3 cut(s) 293, 327, 344
PspPI GGNCC 2 cut(s) 167, 292
PsuI RGATCY 1 cut(s) 325
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 524
SatI GCNGC 3 cut(s) 183, 341, 453
Sau3AI GATC 2 cut(s) 85, 325
Sau96I GGNCC 2 cut(s) 167, 292
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 1 cut(s) 366
SetI ASST 5 cut(s) 14, 128, 147, 366, 454
Sse9I AATT 5 cut(s) 76, 117, 186, 496, 518
SsiI CCGC 3 cut(s) 70, 340, 492
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 1 cut(s) 26
TasI AATT 5 cut(s) 76, 117, 186, 496, 518
TauI GCSGC 1 cut(s) 343
Tru1I TTAA 1 cut(s) 524
Tru9I TTAA 1 cut(s) 524
TseI GCWGC 2 cut(s) 182, 452
TspDTI ATGAA 3 cut(s) 270, 296, 420
XapI RAATTY 1 cut(s) 117
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.