Rmu_sc0003418.1_g000010

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003418.1
OG0000466
Physical Location & Seq
Forward (+)
39441 .. 40025
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003418.1_g000010.1.cds

Sequence Viewer

Length: 585 bp
atgaatgtgaggccccttttgggtggaaagtggaatcaagtccgggcattgactctgattcaattcagaaggagatcgatggcgtcaacctcttctcgtcgtcaatggaaatacgatgtgtttctcaatttcaggggggaagatacccgctcatattttaccggtcttctgtattctgcactaaatcagaaaggaattctgacctttatggatgacgcagagcttgagaaaggaaaatccattaggcctgaacttttagctgcaattgaggactctagatctgcgattgtcattctctcacccacctatgctgattcatcgtggtgcttgaatgaactcgtcaagattattcaatgcatgaaagatatgggccaacaagttctccccgtcttctttggcgtgtgtccttgtgatgtgcggcaccgaaggggatggtttcagctcaaaagggaaacccaagtagatgtggaagtaagggaacatgaagaagtttatgggaagaatgaggacacactatatgcctggagagctgctttgactgaggtcgccaatctttctggctggcattcctggaattattcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

194

Amino Acids

22.56

Weight (kDa)

8.68

Isoelectric Point (pI)

56.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 420
AccBSI CCGCTC 1 cut(s) 150
AciI CCGC 2 cut(s) 148, 418
AcsI RAATTY 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 20
AgeI ACCGGT 1 cut(s) 161
AgsI TTSAA 3 cut(s) 62, 331, 353
AjnI CCWGG 2 cut(s) 521, 569
AluBI AGCT 4 cut(s) 223, 260, 442, 530
AluI AGCT 4 cut(s) 223, 260, 442, 530
AoxI GGCC 3 cut(s) 11, 245, 370
ApeKI GCWGC 2 cut(s) 260, 530
ApoI RAATTY 1 cut(s) 195
AsiGI ACCGGT 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 12, 370
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 291
BanI GGYRCC 1 cut(s) 420
BbsI GAAGAC 2 cut(s) 158, 382
BbvI GCAGC 2 cut(s) 247, 517
BccI CCATC 2 cut(s) 73, 426
BciT130I CCWGG 2 cut(s) 523, 571
BcnI CCSGG 1 cut(s) 44
BfaI CTAG 1 cut(s) 276
BglII AGATCT 1 cut(s) 278
BisI GCNGC 3 cut(s) 261, 419, 531
BlsI GCNGC 3 cut(s) 262, 420, 532
Bme1390I CCNGG 3 cut(s) 44, 523, 571
BmgT120I GGNCC 2 cut(s) 12, 370
BmiI GGNNCC 2 cut(s) 14, 422
BmrFI CCNGG 3 cut(s) 44, 523, 571
BoxI GACNNNNGTC 1 cut(s) 542
BpiI GAAGAC 2 cut(s) 158, 382
BpmI CTGGAG 1 cut(s) 544
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 83
BsaWI WCCGGW 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 161
BseBI CCWGG 2 cut(s) 523, 571
BseCI ATCGAT 1 cut(s) 77
BseGI GGATG 2 cut(s) 217, 437
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 531
BseXI GCAGC 2 cut(s) 247, 517
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 3 cut(s) 13, 247, 372
BshNI GGYRCC 1 cut(s) 420
BshTI ACCGGT 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 77
BsiSI CCGG 2 cut(s) 43, 162
BslI CCNNNNNNNGG 1 cut(s) 20
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 3 cut(s) 13, 247, 372
Bsp143I GATC 2 cut(s) 74, 278
BspACI CCGC 2 cut(s) 148, 418
BspANI GGCC 3 cut(s) 13, 247, 372
BspCNI CTCAG 1 cut(s) 532
BspDI ATCGAT 1 cut(s) 77
BspLI GGNNCC 2 cut(s) 14, 422
BspT107I GGYRCC 1 cut(s) 420
BsrBI CCGCTC 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 161
BssMI GATC 2 cut(s) 74, 278
BssNI GRCGYC 1 cut(s) 83
Bst2UI CCWGG 2 cut(s) 523, 571
Bst6I CTCTTC 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 563
BstDEI CTNAG 1 cut(s) 540
BstF5I GGATG 2 cut(s) 217, 437
BstKTI GATC 2 cut(s) 77, 281
BstMBI GATC 2 cut(s) 74, 278
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstNI CCWGG 2 cut(s) 523, 571
BstPAI GACNNNNGTC 1 cut(s) 542
BstSCI CCNGG 3 cut(s) 42, 521, 569
BstV1I GCAGC 2 cut(s) 247, 517
BstV2I GAAGAC 2 cut(s) 158, 382
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
Bsu15I ATCGAT 1 cut(s) 77
BsuRI GGCC 3 cut(s) 13, 247, 372
BsuTUI ATCGAT 1 cut(s) 77
BtsCI GGATG 2 cut(s) 217, 437
Cac8I GCNNGC 1 cut(s) 563
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 12, 370
ClaI ATCGAT 1 cut(s) 77
CseI GACGC 2 cut(s) 72, 224
CspAI ACCGGT 1 cut(s) 161
CviAII CATG 2 cut(s) 358, 482
CviJI RGCY 8 cut(s) 13, 223, 247, 260, 372, 442, 530, 561
CviKI_1 RGCY 8 cut(s) 13, 223, 247, 260, 372, 442, 530, 561
DdeI CTNAG 1 cut(s) 540
DpnI GATC 2 cut(s) 76, 280
DpnII GATC 2 cut(s) 74, 278
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco147I AGGCCT 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 195
EcoRII CCWGG 2 cut(s) 521, 569
EcoT22I ATGCAT 1 cut(s) 359
FaeI CATG 2 cut(s) 361, 485
FaiI YATR 9 cut(s) 154, 209, 309, 359, 368, 483, 495, 517, 519
FatI CATG 2 cut(s) 357, 481
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 3 cut(s) 261, 419, 531
FokI GGATG 2 cut(s) 224, 444
Fsp4HI GCNGC 3 cut(s) 261, 419, 531
FspBI CTAG 1 cut(s) 276
GluI GCNGC 3 cut(s) 261, 419, 531
GsuI CTGGAG 1 cut(s) 544
HaeIII GGCC 3 cut(s) 13, 247, 372
HapII CCGG 2 cut(s) 43, 162
HgaI GACGC 2 cut(s) 72, 224
Hin1I GRCGYC 1 cut(s) 83
Hin1II CATG 2 cut(s) 361, 485
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HinfI GANTC 5 cut(s) 34, 52, 58, 272, 314
HpaII CCGG 2 cut(s) 43, 162
HphI GGTGA 1 cut(s) 291
Hpy166II GTNNAC 1 cut(s) 87
Hpy188I TCNGA 4 cut(s) 57, 68, 189, 201
Hpy188III TCNNGA 2 cut(s) 276, 343
Hpy8I GTNNAC 1 cut(s) 87
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 2 cut(s) 63, 420
HpyCH4V TGCA 3 cut(s) 179, 263, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 1 cut(s) 540
Hsp92I GRCGYC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 361, 485
Kzo9I GATC 2 cut(s) 74, 278
LpnPI CCDG 9 cut(s) 56, 118, 175, 261, 508, 535, 543, 547, 556
Lsp1109I GCAGC 2 cut(s) 247, 517
MaeI CTAG 1 cut(s) 276
MalI GATC 2 cut(s) 76, 280
MbiI CCGCTC 1 cut(s) 150
MboI GATC 2 cut(s) 74, 278
MboII GAAGA 6 cut(s) 84, 152, 158, 382, 497, 511
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 278
MluCI AATT 5 cut(s) 62, 127, 195, 264, 574
MlyI GAGTC 2 cut(s) 46, 266
MnlI CCTC 5 cut(s) 3, 100, 262, 499, 535
Mph1103I ATGCAT 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 322
MspI CCGG 2 cut(s) 43, 162
MspR9I CCNGG 3 cut(s) 44, 523, 571
MunI CAATTG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 2 cut(s) 523, 571
MwoI GCNNNNNNNGC 1 cut(s) 527
NciI CCSGG 1 cut(s) 44
NdeII GATC 2 cut(s) 74, 278
NlaIII CATG 2 cut(s) 361, 485
NlaIV GGNNCC 2 cut(s) 14, 422
NsiI ATGCAT 1 cut(s) 359
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 565
PfeI GAWTC 3 cut(s) 34, 58, 314
PfoI TCCNGGA 1 cut(s) 569
PinAI ACCGGT 1 cut(s) 161
PkrI GCNGC 3 cut(s) 262, 420, 532
PleI GAGTC 2 cut(s) 46, 266
PpsI GAGTC 2 cut(s) 46, 266
PshAI GACNNNNGTC 1 cut(s) 542
Psp6I CCWGG 2 cut(s) 521, 569
PspGI CCWGG 2 cut(s) 521, 569
PspN4I GGNNCC 2 cut(s) 14, 422
PspPI GGNCC 2 cut(s) 12, 370
PsuI RGATCY 1 cut(s) 278
RseI CAYNNNNRTG 1 cut(s) 322
SatI GCNGC 3 cut(s) 261, 419, 531
Sau3AI GATC 2 cut(s) 74, 278
Sau96I GGNCC 2 cut(s) 12, 370
SchI GAGTC 2 cut(s) 46, 266
ScrFI CCNGG 3 cut(s) 44, 523, 571
SetI ASST 8 cut(s) 92, 206, 225, 262, 308, 444, 532, 546
SmiMI CAYNNNNRTG 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 5 cut(s) 62, 127, 195, 264, 574
SseBI AGGCCT 1 cut(s) 247
SsiI CCGC 2 cut(s) 148, 418
SspMI CTAG 1 cut(s) 276
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 3 cut(s) 42, 521, 569
TaqI TCGA 1 cut(s) 77
TasI AATT 5 cut(s) 62, 127, 195, 264, 574
TauI GCSGC 1 cut(s) 421
TfiI GAWTC 3 cut(s) 34, 58, 314
TseI GCWGC 2 cut(s) 260, 530
TspDTI ATGAA 5 cut(s) 17, 306, 348, 374, 498
XapI RAATTY 1 cut(s) 195
XbaI TCTAGA 1 cut(s) 275
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.