RLG00000030353

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000466
Physical Location & Seq
Forward (+)
59955021 .. 59955518
498 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030353

Sequence Viewer

Length: 498 bp
ATGTCAACCTCTTCTCGTCGTCGATGGCGATATGATGTGTTTCTAAGTTTCAGGGGGGCAGATACGCGCAATACTTTTACCGATCATCTGTATTCTGCACTAAATCAGAAAGGAATTCTCACCTTTCGGGATGACCCAGAGCTTGGGAAAGGAAAATCCCTAAGGCCTGAACTTTTAGCTGCAATTGAGGAGTCTAGATTTGCGATTGTCATTCTCTCACGGAGCTATGCTTCTTCGTCATGGTGTTTGGATGAACTTGTCAAGATTATTCAATGCATGAAAGAGATGGGCCAACAAGTCCTTCCCGTCTTCTACAGGGTGGATCCTTCTGATGTGCGGCACCAAAGGGGAAGTTTTGAGCTCAAATGGGAACCCCAAGTAGAAGTAAGGGAACATGTAGAAGTTTATGGGAAGAATGAGGACAGACTAAATGCGTGGAGAGCTGCTTTGACAGAGGTGGCCAATCTTTCTGGCTGGGTTTACAAGAGTTATTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

166

Amino Acids

19.23

Weight (kDa)

8.55

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 163 5.2e-48 TIR domain
TIR_2 PF13676 13 - 110 2.6e-16 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 339
AccB7I CCANNNNNTGG 1 cut(s) 143
AccII CGCG 1 cut(s) 67
AciI CCGC 1 cut(s) 337
AclWI GGATC 2 cut(s) 317, 330
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 1 cut(s) 272
AjuI GAANNNNNNNTTGG 2 cut(s) 285, 317
AluBI AGCT 5 cut(s) 142, 179, 225, 361, 443
AluI AGCT 5 cut(s) 142, 179, 225, 361, 443
Alw21I GWGCWC 1 cut(s) 363
AlwI GGATC 2 cut(s) 317, 330
AoxI GGCC 3 cut(s) 164, 289, 459
ApeKI GCWGC 2 cut(s) 179, 443
ApoI RAATTY 1 cut(s) 114
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 112
AxyI CCTNAGG 1 cut(s) 161
BalI TGGCCA 1 cut(s) 461
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 339
BanII GRGCYC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 2 cut(s) 166, 430
BccI CCATC 2 cut(s) 18, 280
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 1 cut(s) 313
BisI GCNGC 3 cut(s) 180, 338, 444
BlsI GCNGC 3 cut(s) 181, 339, 445
BmgT120I GGNCC 1 cut(s) 289
BmiI GGNNCC 3 cut(s) 324, 341, 372
BpiI GAAGAC 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse21I CCTNAGG 1 cut(s) 161
BseGI GGATG 2 cut(s) 136, 256
BseLI CCNNNNNNNGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 166, 430
BseYI CCCAGC 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 3 cut(s) 166, 291, 461
BshNI GGYRCC 1 cut(s) 339
BsiHKAI GWGCWC 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 143
BsnI GGCC 3 cut(s) 166, 291, 461
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 82, 322
BspACI CCGC 1 cut(s) 337
BspANI GGCC 3 cut(s) 166, 291, 461
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 3 cut(s) 324, 341, 372
BspPI GGATC 2 cut(s) 317, 330
BspT107I GGYRCC 1 cut(s) 339
BssMI GATC 2 cut(s) 82, 322
Bst6I CTCTTC 1 cut(s) 16
BstDEI CTNAG 2 cut(s) 44, 161
BstF5I GGATG 2 cut(s) 136, 256
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 69
BstKTI GATC 2 cut(s) 85, 325
BstMBI GATC 2 cut(s) 82, 322
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 313
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 166, 430
BstV2I GAAGAC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
Bsu36I CCTNAGG 1 cut(s) 161
BsuRI GGCC 3 cut(s) 166, 291, 461
BtsCI GGATG 2 cut(s) 136, 256
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 289
CviAII CATG 3 cut(s) 240, 277, 395
CviJI RGCY 9 cut(s) 142, 166, 179, 225, 291, 361, 443, 461, 474
CviKI_1 RGCY 9 cut(s) 142, 166, 179, 225, 291, 361, 443, 461, 474
DdeI CTNAG 2 cut(s) 44, 161
DpnI GATC 2 cut(s) 84, 324
DpnII GATC 2 cut(s) 82, 322
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 361
Eco81I CCTNAGG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 278
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 3 cut(s) 243, 280, 398
FaiI YATR 6 cut(s) 33, 228, 241, 278, 396, 408
FatI CATG 3 cut(s) 239, 276, 394
Fnu4HI GCNGC 3 cut(s) 180, 338, 444
FokI GGATG 2 cut(s) 143, 263
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 3 cut(s) 180, 338, 444
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 68
GluI GCNGC 3 cut(s) 180, 338, 444
GsaI CCCAGC 1 cut(s) 478
HaeIII GGCC 3 cut(s) 166, 291, 461
HhaI GCGC 1 cut(s) 69
Hin1II CATG 3 cut(s) 243, 280, 398
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 191
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 6, 481
Hpy188I TCNGA 2 cut(s) 108, 331
Hpy188III TCNNGA 3 cut(s) 128, 195, 262
Hpy8I GTNNAC 2 cut(s) 6, 481
Hpy99I CGWCG 2 cut(s) 21, 24
HpyAV CCTTC 2 cut(s) 311, 336
HpyCH4V TGCA 3 cut(s) 98, 182, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 2 cut(s) 44, 161
Hsp92II CATG 3 cut(s) 243, 280, 398
HspAI GCGC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 82, 322
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 6 cut(s) 37, 150, 180, 301, 456, 460
Lsp1109I GCAGC 2 cut(s) 166, 430
MaeI CTAG 1 cut(s) 195
MalI GATC 2 cut(s) 84, 324
MboI GATC 2 cut(s) 82, 322
MboII GAAGA 4 cut(s) 3, 225, 301, 424
MfeI CAATTG 1 cut(s) 183
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 363
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 2 cut(s) 114, 183
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 4 cut(s) 19, 181, 412, 448
Mox20I TGGCCA 1 cut(s) 461
Mph1103I ATGCAT 1 cut(s) 278
MscI TGGCCA 1 cut(s) 461
Msp20I TGGCCA 1 cut(s) 461
MunI CAATTG 1 cut(s) 183
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeII GATC 2 cut(s) 82, 322
NlaIII CATG 3 cut(s) 243, 280, 398
NlaIV GGNNCC 3 cut(s) 324, 341, 372
NsiI ATGCAT 1 cut(s) 278
NspI RCATGY 1 cut(s) 398
PceI AGGCCT 1 cut(s) 166
PciI ACATGT 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 143
PkrI GCNGC 3 cut(s) 181, 339, 445
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PscI ACATGT 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 474
PspN4I GGNNCC 3 cut(s) 324, 341, 372
PspPI GGNCC 1 cut(s) 289
PsuI RGATCY 1 cut(s) 322
SacI GAGCTC 1 cut(s) 363
SatI GCNGC 3 cut(s) 180, 338, 444
Sau3AI GATC 2 cut(s) 82, 322
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 200
SduI GDGCHC 1 cut(s) 363
SetI ASST 8 cut(s) 11, 125, 144, 181, 227, 363, 445, 459
SfcI CTRYAG 1 cut(s) 313
Sse9I AATT 2 cut(s) 114, 183
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 1 cut(s) 337
SspMI CTAG 1 cut(s) 195
SstI GAGCTC 1 cut(s) 363
StuI AGGCCT 1 cut(s) 166
TaqI TCGA 1 cut(s) 22
TasI AATT 2 cut(s) 114, 183
TauI GCSGC 1 cut(s) 340
TseI GCWGC 2 cut(s) 179, 443
TspDTI ATGAA 2 cut(s) 267, 293
TspGWI ACGGA 1 cut(s) 235
Van91I CCANNNNNTGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 114
XbaI TCTAGA 1 cut(s) 194
XceI RCATGY 1 cut(s) 398
XspI CTAG 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.