RLG00000036814

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000466
Physical Location & Seq
Reverse (-)
85035764 .. 85036348
585 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036814

Sequence Viewer

Length: 585 bp
ATGTCGTTGGCGATTATTGTGGTAATTGTGACATGGATCGGTGCCATAGCTACTATTAAGTGGATATGGACTCTACTGAAGCATTGGTTCGGTTACATGGTTGAAAGGCGTGAGCCAATTGGCATCTCTACTGAGTGGAAGTATGATGTGTTTTTGAGTTTCAGGGGTCCTGACACTCGCAAGGGGATTACAGTCGACATACGGGATCGACTTAATAGGAGTGGAATTAAAACGTTTATGGATGATCGAGATCTTGAAGTAGGGAATGTTATTAGTCCCGCTCTCTTAACAGCAATCAGAGAATCAAAGTTTGCAATCGTTGTTCTCTCGCAAAATTATGCTTTTTCTACTTGGTGTTTGGAGGAACTTAGAGAGATTTGTCTCTGCATGGAAGACAACAGAATTTTGCCACTTTTTTATCATGTTGATCCTGCTTATGTTCGATATCAGAACGGGAGATACGGAGATGCTTTCTCTAAGCATGAAACCTCTGAGCGACATGAATCAGAGAAGGTGAAGCAATGGAGAGCTGCTTTAAAAAAAGTGGCCGACATTTCTGGGTGGAATACAAATGATTATCAGTAA

Protein Analysis

195

Amino Acids

22.68

Weight (kDa)

7.71

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 47 - 191 1.5e-45 TIR domain
TIR_2 PF13676 50 - 158 1.2e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 41
AccBSI CCGCTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 195
AciI CCGC 1 cut(s) 279
AclI AACGTT 1 cut(s) 233
AclWI GGATC 3 cut(s) 44, 213, 422
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 98
AgsI TTSAA 2 cut(s) 104, 257
AluBI AGCT 2 cut(s) 50, 530
AluI AGCT 2 cut(s) 50, 530
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 3 cut(s) 44, 213, 422
AoxI GGCC 1 cut(s) 546
ApeKI GCWGC 1 cut(s) 530
ApoI RAATTY 1 cut(s) 402
AspS9I GGNCC 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 526
AvaII GGWCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 386
BglII AGATCT 1 cut(s) 250
BisI GCNGC 1 cut(s) 531
BlsI GCNGC 1 cut(s) 532
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 43, 168
BmsI GCATC 2 cut(s) 132, 457
BpiI GAAGAC 1 cut(s) 399
BsaBI GATNNNNATC 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 527
Bse8I GATNNNNATC 1 cut(s) 249
BseGI GGATG 1 cut(s) 247
BseJI GATNNNNATC 1 cut(s) 249
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 2 cut(s) 123, 483
BseXI GCAGC 1 cut(s) 517
BshFI GGCC 1 cut(s) 548
BshNI GGYRCC 1 cut(s) 41
BslFI GGGAC 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 1 cut(s) 548
Bsp143I GATC 5 cut(s) 36, 205, 244, 250, 427
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 548
BspCNI CTCAG 2 cut(s) 124, 484
BspLI GGNNCC 2 cut(s) 43, 168
BspPI GGATC 3 cut(s) 44, 213, 422
BspT107I GGYRCC 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 527
BssMI GATC 5 cut(s) 36, 205, 244, 250, 427
Bst4CI ACNGT 1 cut(s) 193
BstDEI CTNAG 4 cut(s) 132, 368, 477, 492
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 5 cut(s) 39, 208, 247, 253, 430
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 5 cut(s) 36, 205, 244, 250, 427
BstV1I GCAGC 1 cut(s) 517
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 1 cut(s) 548
BtsCI GGATG 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 167
CviAII CATG 6 cut(s) 33, 97, 388, 422, 482, 500
CviJI RGCY 4 cut(s) 50, 115, 530, 548
CviKI_1 RGCY 4 cut(s) 50, 115, 530, 548
DdeI CTNAG 4 cut(s) 132, 368, 477, 492
DpnI GATC 5 cut(s) 38, 207, 246, 252, 429
DpnII GATC 5 cut(s) 36, 205, 244, 250, 427
DraI TTTAAA 1 cut(s) 537
EaeI YGGCCR 1 cut(s) 546
Eco32I GATATC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 167
EcoRV GATATC 1 cut(s) 446
FaeI CATG 6 cut(s) 36, 100, 391, 425, 485, 503
FaqI GGGAC 1 cut(s) 261
FatI CATG 6 cut(s) 32, 96, 387, 421, 481, 499
FauI CCCGC 1 cut(s) 286
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 531
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 531
GluI GCNGC 1 cut(s) 531
HaeIII GGCC 1 cut(s) 548
Hin1II CATG 6 cut(s) 36, 100, 391, 425, 485, 503
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 3 cut(s) 70, 302, 503
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 4 cut(s) 299, 450, 493, 508
Hpy188III TCNNGA 3 cut(s) 170, 248, 254
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 505
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 314, 387
HpyF3I CTNAG 4 cut(s) 132, 368, 477, 492
HpySE526I ACGT 1 cut(s) 233
Hsp92II CATG 6 cut(s) 36, 100, 391, 425, 485, 503
Kzo9I GATC 5 cut(s) 36, 205, 244, 250, 427
LpnPI CCDG 4 cut(s) 148, 183, 444, 543
Lsp1109I GCAGC 1 cut(s) 517
LweI GCATC 2 cut(s) 132, 457
MaeII ACGT 1 cut(s) 233
MaeIII GTNAC 2 cut(s) 28, 92
MalI GATC 5 cut(s) 38, 207, 246, 252, 429
MbiI CCGCTC 1 cut(s) 281
MboI GATC 5 cut(s) 36, 205, 244, 250, 427
MboII GAAGA 1 cut(s) 404
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 1 cut(s) 250
MluCI AATT 5 cut(s) 24, 117, 225, 334, 402
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 2 cut(s) 355, 499
MseI TTAA 5 cut(s) 57, 213, 228, 287, 536
MunI CAATTG 1 cut(s) 117
NdeII GATC 5 cut(s) 36, 205, 244, 250, 427
NlaIII CATG 6 cut(s) 36, 100, 391, 425, 485, 503
NlaIV GGNNCC 2 cut(s) 43, 168
NmuCI GTSAC 1 cut(s) 28
PfeI GAWTC 2 cut(s) 302, 503
PkrI GCNGC 1 cut(s) 532
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 167
Psp1406I AACGTT 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 43, 168
PspPI GGNCC 1 cut(s) 167
PspPPI RGGWCCY 1 cut(s) 167
PsrI GAACNNNNNNTAC 2 cut(s) 443, 475
PsuI RGATCY 1 cut(s) 250
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 5 cut(s) 57, 213, 228, 287, 536
SatI GCNGC 1 cut(s) 531
Sau3AI GATC 5 cut(s) 36, 205, 244, 250, 427
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 64
SetI ASST 5 cut(s) 52, 236, 491, 516, 532
SfaNI GCATC 2 cut(s) 132, 457
SinI GGWCC 1 cut(s) 167
Sse9I AATT 5 cut(s) 24, 117, 225, 334, 402
SsiI CCGC 1 cut(s) 279
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 236
TaqI TCGA 4 cut(s) 195, 208, 247, 442
TasI AATT 5 cut(s) 24, 117, 225, 334, 402
TfiI GAWTC 2 cut(s) 302, 503
Tru1I TTAA 5 cut(s) 57, 213, 228, 287, 536
Tru9I TTAA 5 cut(s) 57, 213, 228, 287, 536
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 530
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 2 cut(s) 498, 516
TspGWI ACGGA 1 cut(s) 477
VpaK11BI GGWCC 1 cut(s) 167
XapI RAATTY 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.