Rmu_sc0002132.1_g000044

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002132.1
OG0000466
Physical Location & Seq
Forward (+)
183102 .. 183614
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002132.1_g000044.1.cds

Sequence Viewer

Length: 513 bp
atggcgtcaacctcttctcgtcgtcaatggaaatacgatgtgtttctaagtttcagggggttcgatacgcgcgggggttttaccggtgatctgtattctgcactaattcggaaaggaattctcacctttcgggacgacgcagagcttgagagaggaaaatccattaggcccgaacttttagctgcaattgagcagtctagatctgtgattgtcattctctcacggaactatggtcgttcgtcatggtgcttggatgaactcgtcaagattattcaatgcatgaaagagatgggccaacaagttttccccgtcttcttctacggcgtggatccttctgatgtgcggcaccaaaggggaagttttgagctcaaatgggaacaccaagtagatgtggaagtaagggaacatgaagaagtttatcggaacaatattgaggacagactaaatgcctggagagctgctttgactgaggtggccaatctttctggctgggattggaagaattatgggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

170

Amino Acids

19.89

Weight (kDa)

6.32

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 345
AccII CGCG 2 cut(s) 70, 72
AciI CCGC 2 cut(s) 72, 343
AclWI GGATC 2 cut(s) 323, 336
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 1 cut(s) 117
AcyI GRCGYC 1 cut(s) 5
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 449
AluBI AGCT 4 cut(s) 145, 182, 367, 458
AluI AGCT 4 cut(s) 145, 182, 367, 458
Alw21I GWGCWC 1 cut(s) 369
AlwI GGATC 2 cut(s) 323, 336
AoxI GGCC 3 cut(s) 167, 292, 474
ApeKI GCWGC 2 cut(s) 182, 458
ApoI RAATTY 1 cut(s) 117
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 2 cut(s) 168, 292
AsuHPI GGTGA 2 cut(s) 98, 115
BalI TGGCCA 1 cut(s) 476
BamHI GGATCC 1 cut(s) 328
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 169, 445
BccI CCATC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 451
BfaI CTAG 1 cut(s) 198
BglII AGATCT 1 cut(s) 200
BisI GCNGC 3 cut(s) 183, 344, 459
BlsI GCNGC 3 cut(s) 184, 345, 460
Bme1390I CCNGG 1 cut(s) 451
BmgT120I GGNCC 2 cut(s) 168, 292
BmiI GGNNCC 2 cut(s) 330, 347
BmrFI CCNGG 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 472
BpuEI CTTGAG 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 83
Bse118I RCCGGY 1 cut(s) 83
BseBI CCWGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 459
BseXI GCAGC 2 cut(s) 169, 445
BseYI CCCAGC 1 cut(s) 489
BsgI GTGCAG 1 cut(s) 84
Bsh1236I CGCG 2 cut(s) 70, 72
BshFI GGCC 3 cut(s) 169, 294, 476
BshNI GGYRCC 1 cut(s) 345
BshTI ACCGGT 1 cut(s) 83
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 146
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 3 cut(s) 169, 294, 476
Bsp1286I GDGCHC 1 cut(s) 369
Bsp143I GATC 3 cut(s) 88, 200, 328
BspACI CCGC 2 cut(s) 72, 343
BspANI GGCC 3 cut(s) 169, 294, 476
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 2 cut(s) 70, 72
BspLI GGNNCC 2 cut(s) 330, 347
BspPI GGATC 2 cut(s) 323, 336
BspT107I GGYRCC 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssMI GATC 3 cut(s) 88, 200, 328
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 451
Bst6I CTCTTC 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 47, 468
BstF5I GGATG 1 cut(s) 259
BstFNI CGCG 2 cut(s) 70, 72
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 3 cut(s) 91, 203, 331
BstMBI GATC 3 cut(s) 88, 200, 328
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 449
BstUI CGCG 2 cut(s) 70, 72
BstV1I GCAGC 2 cut(s) 169, 445
BstV2I GAAGAC 1 cut(s) 304
BstX2I RGATCY 2 cut(s) 200, 328
BstYI RGATCY 2 cut(s) 200, 328
BsuRI GGCC 3 cut(s) 169, 294, 476
BtsCI GGATG 1 cut(s) 259
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 168, 292
CseI GACGC 1 cut(s) 146
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 3 cut(s) 243, 280, 407
CviJI RGCY 8 cut(s) 145, 169, 182, 294, 367, 458, 476, 489
CviKI_1 RGCY 8 cut(s) 145, 169, 182, 294, 367, 458, 476, 489
DdeI CTNAG 2 cut(s) 47, 468
DpnI GATC 3 cut(s) 90, 202, 330
DpnII GATC 3 cut(s) 88, 200, 328
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 369
Eco53kI GAGCTC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 367
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 449
EcoT22I ATGCAT 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 3 cut(s) 246, 283, 410
FaiI YATR 5 cut(s) 231, 244, 281, 408, 507
FaqI GGGAC 1 cut(s) 146
FatI CATG 3 cut(s) 242, 279, 406
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 3 cut(s) 183, 344, 459
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 3 cut(s) 183, 344, 459
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 71
GluI GCNGC 3 cut(s) 183, 344, 459
GsaI CCCAGC 1 cut(s) 493
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 3 cut(s) 169, 294, 476
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 146
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 246, 283, 410
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HpaII CCGG 1 cut(s) 84
HphI GGTGA 2 cut(s) 98, 115
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 3 cut(s) 111, 337, 423
Hpy188III TCNNGA 3 cut(s) 131, 198, 265
Hpy8I GTNNAC 1 cut(s) 9
Hpy99I CGWCG 2 cut(s) 24, 140
HpyAV CCTTC 1 cut(s) 342
HpyCH4V TGCA 3 cut(s) 101, 185, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 2 cut(s) 47, 468
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 246, 283, 410
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 3 cut(s) 88, 200, 328
LpnPI CCDG 6 cut(s) 40, 97, 436, 463, 471, 475
Lsp1109I GCAGC 2 cut(s) 169, 445
MaeI CTAG 1 cut(s) 198
MalI GATC 3 cut(s) 90, 202, 330
MboI GATC 3 cut(s) 88, 200, 328
MboII GAAGA 5 cut(s) 6, 304, 307, 422, 511
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 2 cut(s) 200, 328
MhlI GDGCHC 1 cut(s) 369
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 4 cut(s) 105, 117, 186, 502
MluNI TGGCCA 1 cut(s) 476
MnlI CCTC 4 cut(s) 22, 146, 427, 463
Mox20I TGGCCA 1 cut(s) 476
Mph1103I ATGCAT 1 cut(s) 281
MscI TGGCCA 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 476
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 451
MunI CAATTG 1 cut(s) 186
MvaI CCWGG 1 cut(s) 451
MvnI CGCG 2 cut(s) 70, 72
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 3 cut(s) 88, 200, 328
NlaIII CATG 3 cut(s) 246, 283, 410
NlaIV GGNNCC 2 cut(s) 330, 347
NsiI ATGCAT 1 cut(s) 281
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 3 cut(s) 184, 345, 460
Psp124BI GAGCTC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 489
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 2 cut(s) 330, 347
PspPI GGNCC 2 cut(s) 168, 292
PsuI RGATCY 2 cut(s) 200, 328
SacI GAGCTC 1 cut(s) 369
SatI GCNGC 3 cut(s) 183, 344, 459
Sau3AI GATC 3 cut(s) 88, 200, 328
Sau96I GGNCC 2 cut(s) 168, 292
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 1 cut(s) 369
SetI ASST 7 cut(s) 14, 128, 147, 184, 369, 460, 474
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 4 cut(s) 105, 117, 186, 502
SsiI CCGC 2 cut(s) 72, 343
SspI AATATT 1 cut(s) 430
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 369
StyD4I CCNGG 1 cut(s) 449
TaqI TCGA 1 cut(s) 63
TasI AATT 4 cut(s) 105, 117, 186, 502
TauI GCSGC 1 cut(s) 346
TseI GCWGC 2 cut(s) 182, 458
TspDTI ATGAA 3 cut(s) 270, 296, 423
TspGWI ACGGA 1 cut(s) 238
XapI RAATTY 1 cut(s) 117
XbaI TCTAGA 1 cut(s) 197
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.