Rroxscaffold_1G00003600

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000466
Physical Location & Seq
Forward (+)
4442204 .. 4442554
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003600.1

Sequence Viewer

Length: 351 bp
ATGGATGATCCAGATCTTGAACATGGGGATGCTATTTCTTCCACTCTGCTAAAGGCAATTGAAGAATCACAGTTTGCAATTGTTGTTTTCTCTCAAAACTATGCCTCTTCTACTTGGTGTTTGGAGGAACTTGCAAAGATCTGTGAGTACATGGAAGGTCAGAACAGAATTCTTCCGCTCTTTTATCACGTGGAGCCCTCTGATGTTCGGTATCAGAAGAATAGTTTCGAAGAAGCTTTCTCTAAACATAAAACCTCTGGGCGATACCCATCGGAAAAGATCCAGCAGTGGAGAGATGCTTTAAACAAAGTGGCCGGTTTATCTGGACGGAATACACAGGATTTTGAGTAA

Protein Analysis

116

Amino Acids

13.35

Weight (kDa)

4.92

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 113 4.7e-30 TIR domain
TIR_2 PF13676 2 - 67 2.6e-10 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 178
AciI CCGC 1 cut(s) 176
AclWI GGATC 2 cut(s) 2, 274
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 168
AcvI CACGTG 1 cut(s) 190
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 2 cut(s) 20, 62
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
AlwI GGATC 2 cut(s) 2, 274
AoxI GGCC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 168
Asp700I GAANNNNTTC 1 cut(s) 224
AsuII TTCGAA 1 cut(s) 228
BanII GRGCYC 1 cut(s) 198
BbrPI CACGTG 1 cut(s) 190
BccI CCATC 1 cut(s) 277
BglII AGATCT 2 cut(s) 13, 138
BmiI GGNNCC 1 cut(s) 195
BmsI GCATC 2 cut(s) 19, 286
Bpu14I TTCGAA 1 cut(s) 228
BsaAI YACGTR 1 cut(s) 190
BsaBI GATNNNNATC 2 cut(s) 12, 268
Bse118I RCCGGY 1 cut(s) 314
Bse8I GATNNNNATC 2 cut(s) 12, 268
BseGI GGATG 2 cut(s) 10, 34
BseJI GATNNNNATC 2 cut(s) 12, 268
BshFI GGCC 1 cut(s) 314
BsiSI CCGG 1 cut(s) 315
BsnI GGCC 1 cut(s) 314
Bsp119I TTCGAA 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 4 cut(s) 7, 13, 138, 279
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 2 cut(s) 2, 274
BspT104I TTCGAA 1 cut(s) 228
BsrBI CCGCTC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 314
BssMI GATC 4 cut(s) 7, 13, 138, 279
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 190
BstBI TTCGAA 1 cut(s) 228
BstF5I GGATG 2 cut(s) 10, 34
BstKTI GATC 4 cut(s) 10, 16, 141, 282
BstMBI GATC 4 cut(s) 7, 13, 138, 279
BstX2I RGATCY 3 cut(s) 13, 138, 279
BstYI RGATCY 3 cut(s) 13, 138, 279
BsuRI GGCC 1 cut(s) 314
BtsCI GGATG 2 cut(s) 10, 34
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 314
Csp6I GTAC 1 cut(s) 148
CviAII CATG 2 cut(s) 23, 151
CviJI RGCY 3 cut(s) 196, 236, 314
CviKI_1 RGCY 3 cut(s) 196, 236, 314
CviQI GTAC 1 cut(s) 148
DpnI GATC 4 cut(s) 9, 15, 140, 281
DpnII GATC 4 cut(s) 7, 13, 138, 279
DraI TTTAAA 1 cut(s) 303
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 198
Eco72I CACGTG 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 2 cut(s) 26, 154
FaiI YATR 4 cut(s) 24, 102, 152, 249
FatI CATG 2 cut(s) 22, 150
FokI GGATG 2 cut(s) 17, 41
FriOI GRGCYC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 314
HapII CCGG 1 cut(s) 315
Hin1II CATG 2 cut(s) 26, 154
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 315
Hpy188I TCNGA 4 cut(s) 162, 202, 216, 274
Hpy188III TCNNGA 3 cut(s) 11, 17, 324
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 77, 134
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 2 cut(s) 26, 154
Kzo9I GATC 4 cut(s) 7, 13, 138, 279
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 6 cut(s) 24, 243, 296, 309, 323, 328
LweI GCATC 2 cut(s) 19, 286
MaeII ACGT 1 cut(s) 189
MalI GATC 4 cut(s) 9, 15, 140, 281
MbiI CCGCTC 1 cut(s) 178
MboI GATC 4 cut(s) 7, 13, 138, 279
MboII GAAGA 6 cut(s) 30, 74, 99, 164, 229, 242
MfeI CAATTG 2 cut(s) 57, 78
MflI RGATCY 3 cut(s) 13, 138, 279
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 3 cut(s) 57, 78, 168
MnlI CCTC 4 cut(s) 115, 118, 208, 265
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 1 cut(s) 315
MunI CAATTG 2 cut(s) 57, 78
NdeII GATC 4 cut(s) 7, 13, 138, 279
NlaIII CATG 2 cut(s) 26, 154
NlaIV GGNNCC 1 cut(s) 195
NspV TTCGAA 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 65
PmaCI CACGTG 1 cut(s) 190
PmlI CACGTG 1 cut(s) 190
Ppu21I YACGTR 1 cut(s) 190
PspCI CACGTG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 195
PsuI RGATCY 3 cut(s) 13, 138, 279
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 302
Sau3AI GATC 4 cut(s) 7, 13, 138, 279
SduI GDGCHC 1 cut(s) 198
SetI ASST 4 cut(s) 160, 192, 238, 257
SfaNI GCATC 2 cut(s) 19, 286
SfuI TTCGAA 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 3 cut(s) 57, 78, 168
SsiI CCGC 1 cut(s) 176
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 1 cut(s) 192
TaqI TCGA 1 cut(s) 228
TasI AATT 3 cut(s) 57, 78, 168
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 343
TspRI CASTG 1 cut(s) 293
XapI RAATTY 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.