Rmu_co8082032.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8082032.1
OG0000466
Physical Location & Seq
Reverse (-)
35 .. 532
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8082032.1_g000001.1.cds

Sequence Viewer

Length: 498 bp
atgactagaaagtggaaatacgatgtctttctaagtttcagcggggcagatacccgctatacttttaccaatcgtttgtattctgcactaattcgaaaagggattctgacctttatggatgacgcagagcttgagaaaggaaaatccattaggcctgaacttttaggtgcaattgaggactctagatctgccattgtcattctctcaaagaagtatgctgcttcgtcatggtgcttggatgaactcgtcaagattattcaatgcatgaaagagaggggccaacaagtcttccccgtcttctacttgggcgtggatccttctgatgtgcggcaccaaaggcgaagttttgagctcatcaaatgggaacaccaagtagatgtggaagtaagggaacatgaagaagtttatggcaagaatcatgatagactaaatgcgtggagagctgctttgactgaagtggccaatctgtctggctgggataacaagaattatgggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

165

Amino Acids

19.25

Weight (kDa)

7.76

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 330
AciI CCGC 3 cut(s) 42, 55, 328
AclWI GGATC 2 cut(s) 308, 321
AcoI YGGCCR 1 cut(s) 459
AcuI CTGAAG 1 cut(s) 474
AgsI TTSAA 1 cut(s) 260
AluBI AGCT 3 cut(s) 130, 352, 443
AluI AGCT 3 cut(s) 130, 352, 443
Alw21I GWGCWC 1 cut(s) 354
AlwI GGATC 2 cut(s) 308, 321
AoxI GGCC 3 cut(s) 152, 277, 459
ApeKI GCWGC 2 cut(s) 218, 443
AspS9I GGNCC 1 cut(s) 277
AsuII TTCGAA 1 cut(s) 94
BalI TGGCCA 1 cut(s) 461
BamHI GGATCC 1 cut(s) 313
BanI GGYRCC 1 cut(s) 330
BanII GRGCYC 1 cut(s) 354
BbsI GAAGAC 2 cut(s) 280, 289
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 205, 430
BfaI CTAG 2 cut(s) 6, 183
BglII AGATCT 1 cut(s) 185
BisI GCNGC 3 cut(s) 219, 329, 444
BlsI GCNGC 3 cut(s) 220, 330, 445
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 3 cut(s) 278, 315, 332
BpiI GAAGAC 2 cut(s) 280, 289
Bpu14I TTCGAA 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 152
BseGI GGATG 2 cut(s) 124, 244
BseXI GCAGC 2 cut(s) 205, 430
BseYI CCCAGC 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 3 cut(s) 154, 279, 461
BshNI GGYRCC 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 354
BsnI GGCC 3 cut(s) 154, 279, 461
Bsp119I TTCGAA 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 2 cut(s) 185, 313
BspACI CCGC 3 cut(s) 42, 55, 328
BspANI GGCC 3 cut(s) 154, 279, 461
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 3 cut(s) 278, 315, 332
BspPI GGATC 2 cut(s) 308, 321
BspT104I TTCGAA 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 330
BssMI GATC 2 cut(s) 185, 313
BstBI TTCGAA 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 124, 244
BstKTI GATC 2 cut(s) 188, 316
BstMBI GATC 2 cut(s) 185, 313
BstMWI GCNNNNNNNGC 2 cut(s) 337, 440
BstV1I GCAGC 2 cut(s) 205, 430
BstV2I GAAGAC 2 cut(s) 280, 289
BstX2I RGATCY 2 cut(s) 185, 313
BstYI RGATCY 2 cut(s) 185, 313
BsuRI GGCC 3 cut(s) 154, 279, 461
BtsCI GGATG 2 cut(s) 124, 244
CciI TCATGA 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 1 cut(s) 131
CviAII CATG 4 cut(s) 228, 265, 395, 419
CviJI RGCY 7 cut(s) 130, 154, 279, 352, 443, 461, 474
CviKI_1 RGCY 7 cut(s) 130, 154, 279, 352, 443, 461, 474
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 187, 315
DpnII GATC 2 cut(s) 185, 313
EaeI YGGCCR 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 354
Eco53kI GAGCTC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 354
FaeI CATG 4 cut(s) 231, 268, 398, 422
FaiI YATR 9 cut(s) 60, 116, 216, 229, 266, 396, 408, 420, 492
FatI CATG 4 cut(s) 227, 264, 394, 418
FauI CCCGC 2 cut(s) 35, 62
Fnu4HI GCNGC 3 cut(s) 219, 329, 444
FokI GGATG 2 cut(s) 131, 251
FriOI GRGCYC 1 cut(s) 354
Fsp4HI GCNGC 3 cut(s) 219, 329, 444
FspBI CTAG 2 cut(s) 6, 183
GluI GCNGC 3 cut(s) 219, 329, 444
GsaI CCCAGC 1 cut(s) 478
HaeIII GGCC 3 cut(s) 154, 279, 461
HgaI GACGC 1 cut(s) 131
Hin1II CATG 4 cut(s) 231, 268, 398, 422
HinfI GANTC 3 cut(s) 103, 179, 415
Hpy188I TCNGA 2 cut(s) 108, 322
Hpy188III TCNNGA 3 cut(s) 183, 250, 419
HpyAV CCTTC 1 cut(s) 327
HpyCH4V TGCA 3 cut(s) 86, 170, 264
HpyF10VI GCNNNNNNNGC 2 cut(s) 337, 440
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 4 cut(s) 231, 268, 398, 422
Kzo9I GATC 2 cut(s) 185, 313
LpnPI CCDG 3 cut(s) 168, 456, 460
Lsp1109I GCAGC 2 cut(s) 205, 430
MaeI CTAG 2 cut(s) 6, 183
MalI GATC 2 cut(s) 187, 315
MboI GATC 2 cut(s) 185, 313
MboII GAAGA 3 cut(s) 280, 289, 410
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 2 cut(s) 185, 313
MhlI GDGCHC 1 cut(s) 354
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 3 cut(s) 90, 171, 487
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 2 cut(s) 169, 267
Mox20I TGGCCA 1 cut(s) 461
Mph1103I ATGCAT 1 cut(s) 266
MscI TGGCCA 1 cut(s) 461
Msp20I TGGCCA 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 42
MunI CAATTG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 337, 440
NdeII GATC 2 cut(s) 185, 313
NlaIII CATG 4 cut(s) 231, 268, 398, 422
NlaIV GGNNCC 3 cut(s) 278, 315, 332
NsiI ATGCAT 1 cut(s) 266
NspV TTCGAA 1 cut(s) 94
PagI TCATGA 1 cut(s) 418
PceI AGGCCT 1 cut(s) 154
PfeI GAWTC 2 cut(s) 103, 415
PkrI GCNGC 3 cut(s) 220, 330, 445
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 474
PspN4I GGNNCC 3 cut(s) 278, 315, 332
PspPI GGNCC 1 cut(s) 277
PsuI RGATCY 2 cut(s) 185, 313
SacI GAGCTC 1 cut(s) 354
SatI GCNGC 3 cut(s) 219, 329, 444
Sau3AI GATC 2 cut(s) 185, 313
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 354
SetI ASST 5 cut(s) 113, 132, 169, 354, 445
SfuI TTCGAA 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 90, 171, 487
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 3 cut(s) 42, 55, 328
SspMI CTAG 2 cut(s) 6, 183
SstI GAGCTC 1 cut(s) 354
StuI AGGCCT 1 cut(s) 154
TaqI TCGA 1 cut(s) 94
TasI AATT 3 cut(s) 90, 171, 487
TauI GCSGC 1 cut(s) 331
TfiI GAWTC 2 cut(s) 103, 415
TseI GCWGC 2 cut(s) 218, 443
TspDTI ATGAA 3 cut(s) 255, 281, 411
XbaI TCTAGA 1 cut(s) 182
XspI CTAG 2 cut(s) 6, 183
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.