RLG00000030374

Toll - interleukin 1 - resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000466
Physical Location & Seq
Forward (+)
60254623 .. 60254985
363 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030374

Sequence Viewer

Length: 363 bp
ATGACTAGAAAGTGGAAATACGATGTCTTTCTAAGTTTCAGCGGGTCAGATACCCGCTATACTTTTACCAATCGTCTGTATTCTGCACTAATTCGAAAAGGGATTCTCACCTTTATGGATGACGCAGAGCTTGAGAAAGGAAAATCCATTAGGCCTGAACTATTAGGTGCAATTGAGGACTCTAGATCTGCGATTGTCATTCTCTCAAAGAAGTATGCTGCTTCGTCATGGTGCTTGGACGAACTCGTCAAGATTATTCAATGCATGAAAGATATGGGCCAACAAGTCTTCCCGGTGTGGATCCTTCTGATGTGCGGCACCAAAGGCGAAGTTTTGAGCTCATCAAATGGGAACACCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIR

Protein Analysis

121

Amino Acids

13.59

Weight (kDa)

9.03

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 6 - 99 1.7e-33 TIR domain
TIR_2 PF13676 9 - 101 1.5e-15 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 317
AciI CCGC 3 cut(s) 42, 55, 315
AclWI GGATC 2 cut(s) 295, 308
AgsI TTSAA 1 cut(s) 260
AluBI AGCT 2 cut(s) 130, 339
AluI AGCT 2 cut(s) 130, 339
Alw21I GWGCWC 1 cut(s) 341
AlwI GGATC 2 cut(s) 295, 308
AoxI GGCC 2 cut(s) 152, 277
ApeKI GCWGC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 100
AsuII TTCGAA 1 cut(s) 94
BamHI GGATCC 1 cut(s) 300
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 205
BcnI CCSGG 1 cut(s) 293
BfaI CTAG 2 cut(s) 6, 183
BglII AGATCT 1 cut(s) 185
BisI GCNGC 2 cut(s) 219, 316
BlsI GCNGC 2 cut(s) 220, 317
Bme1390I CCNGG 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 302, 319
BmrFI CCNGG 1 cut(s) 293
BpiI GAAGAC 1 cut(s) 280
Bpu14I TTCGAA 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 152
BpuMI CCSGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 205
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 2 cut(s) 154, 279
BshNI GGYRCC 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 341
BsiSI CCGG 1 cut(s) 293
BsnI GGCC 2 cut(s) 154, 279
Bsp119I TTCGAA 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 2 cut(s) 185, 300
BspACI CCGC 3 cut(s) 42, 55, 315
BspANI GGCC 2 cut(s) 154, 279
BspLI GGNNCC 2 cut(s) 302, 319
BspPI GGATC 2 cut(s) 295, 308
BspT104I TTCGAA 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 317
BssMI GATC 2 cut(s) 185, 300
BstBI TTCGAA 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 2 cut(s) 188, 303
BstMBI GATC 2 cut(s) 185, 300
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 2 cut(s) 185, 300
BstYI RGATCY 2 cut(s) 185, 300
BsuRI GGCC 2 cut(s) 154, 279
BtsCI GGATG 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 277
CseI GACGC 1 cut(s) 131
CviAII CATG 2 cut(s) 228, 265
CviJI RGCY 4 cut(s) 130, 154, 279, 339
CviKI_1 RGCY 4 cut(s) 130, 154, 279, 339
DdeI CTNAG 1 cut(s) 32
DpnI GATC 2 cut(s) 187, 302
DpnII GATC 2 cut(s) 185, 300
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 341
Eco53kI GAGCTC 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 339
EcoT22I ATGCAT 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 341
FaeI CATG 2 cut(s) 231, 268
FaiI YATR 6 cut(s) 60, 116, 216, 229, 266, 275
FatI CATG 2 cut(s) 227, 264
FauI CCCGC 2 cut(s) 35, 62
Fnu4HI GCNGC 2 cut(s) 219, 316
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 2 cut(s) 219, 316
FspBI CTAG 2 cut(s) 6, 183
GluI GCNGC 2 cut(s) 219, 316
HaeIII GGCC 2 cut(s) 154, 279
HapII CCGG 1 cut(s) 293
HgaI GACGC 1 cut(s) 131
Hin1II CATG 2 cut(s) 231, 268
HinfI GANTC 2 cut(s) 103, 179
HpaII CCGG 1 cut(s) 293
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 49, 309
Hpy188III TCNNGA 2 cut(s) 183, 250
HpyAV CCTTC 1 cut(s) 314
HpyCH4V TGCA 3 cut(s) 86, 170, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 2 cut(s) 231, 268
Kzo9I GATC 2 cut(s) 185, 300
LpnPI CCDG 2 cut(s) 168, 306
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 2 cut(s) 6, 183
MalI GATC 2 cut(s) 187, 302
MboI GATC 2 cut(s) 185, 300
MboII GAAGA 1 cut(s) 280
MfeI CAATTG 1 cut(s) 171
MflI RGATCY 2 cut(s) 185, 300
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 2 cut(s) 90, 171
MlyI GAGTC 1 cut(s) 173
MnlI CCTC 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 293
MunI CAATTG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 324
NciI CCSGG 1 cut(s) 293
NdeII GATC 2 cut(s) 185, 300
NlaIII CATG 2 cut(s) 231, 268
NlaIV GGNNCC 2 cut(s) 302, 319
NsiI ATGCAT 1 cut(s) 266
NspV TTCGAA 1 cut(s) 94
PceI AGGCCT 1 cut(s) 154
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 220, 317
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 341
PspN4I GGNNCC 2 cut(s) 302, 319
PspPI GGNCC 1 cut(s) 277
PsuI RGATCY 2 cut(s) 185, 300
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 341
SatI GCNGC 2 cut(s) 219, 316
Sau3AI GATC 2 cut(s) 185, 300
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 293
SduI GDGCHC 1 cut(s) 341
SetI ASST 4 cut(s) 113, 132, 169, 341
SfuI TTCGAA 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 2 cut(s) 90, 171
SseBI AGGCCT 1 cut(s) 154
SsiI CCGC 3 cut(s) 42, 55, 315
SspMI CTAG 2 cut(s) 6, 183
SstI GAGCTC 1 cut(s) 341
StuI AGGCCT 1 cut(s) 154
StyD4I CCNGG 1 cut(s) 291
TaqI TCGA 1 cut(s) 94
TasI AATT 2 cut(s) 90, 171
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 1 cut(s) 103
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 281
XbaI TCTAGA 1 cut(s) 182
XspI CTAG 2 cut(s) 6, 183
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.