Rorug01G0036300

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000466
Physical Location & Seq
Reverse (-)
6086295 .. 6087506
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0036300.1

Sequence Viewer

Length: 1212 bp
ATGGGAGAAATCTTTCTTGCAGCATTCCTTAAGGTGTTGTTGGAGAGATTGACCTCTCGTGACTTCCTCCACTATGCACGGCAGAAAGGAGTTGCCAAAAAGCTTGAGAAATGGAGCGAGACGGTGTCTGAAATTGAGCAGCTTCTCAGTGATGCAGAGGAGAAGCAACTGATGATCAACGAGGCAATGCACCAGTGGTTGATTGAGCTCACGCATTTGGCCTATGATATGGATGACATAGTCGACAAGTTGTCCACTCATCAGATGCTGACAGGAATGGATGAAACTAGAGCTGGCTCAAGTAAGGTACGAAGCTTCATTCCCAAAGTTAAGTTGTACTTTAATAACTCTGAAATGGAGGGCATTGCTCATCGATTACGGAAATTATCCACACAACAAAAGGAGCTATTGAAGATTGTAAACTCAAACATTGAGACTACTTCCTTTCCAGCACTACAAAGGTCACCAAGTTCAATTGTGTTGAATACACCTGTAGCTGGAAGAGATGGGGAAATAAGAAAGATTGTTGGATTATTGTCAAGAGGCTATGAGTCTTCTCGTACCGCCAATACTCATACAGTTGCCATTGTTGGTATGCCAGGAGTCGGCAAGACCACAGTTGCAGCACATGTCTTCATTGCTGTTGCTATGGAACAGTTTTACCCAAAGGTGTGGGTATCTGTGTCTCATAACTTCAACCTTGAAAGAGTGACGAGAGCTATTTGTAGGAAAGTCACTTCCCAGCCATGTGATCAGAATGATTTCAGTGAAGTGCAAGATGATTTGAACAGGGCAATAGCAGGTAAAAGATTTTTGATTGTTTTAGATGATGTCTGGAGCACATGTGACTACGAGTCATGGACAACAATGCAGTCCCACTTCCGTGTTGGAGCACCGGGAAGTACAATACTCGTCACAACACGTGAAGAAAAAGTTGCAAAATTGATTGGAGCCACTGAAGTGTACAATTTGAAGGTTCTTTCAGATGAAGAGTGTTTGAAAGCATTTATGCAACATATTAACAATCAAAGACCACCAAATTTTGATGCAGTATTTGCCAAGAAAATTGTTGAAAAATGCAATGGATTGCCATTGGCGGCAAAAACTCTTGGTGGTATTTTACGTTGTGAAGAAGTTGACAGATGGAATGAAGTATTGGATGACAAGTTGTGGAGTAATCAAATAACGAGAGTAACATACTCCCAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC TIR

Protein Analysis

403

Amino Acids

45.66

Weight (kDa)

7.15

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 9 - 89 2.7e-15 Rx N-terminal domain
AAA_16 PF13191 165 - 257 4.9e-06 AAA ATPase domain
NB-ARC PF00931 173 - 341 4e-31 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 791
AccI GTMKAC 1 cut(s) 243
AciI CCGC 2 cut(s) 564, 1097
AcsI RAATTY 1 cut(s) 1039
AcuI CTGAAG 1 cut(s) 978
AcvI CACGTG 1 cut(s) 923
AfaI GTAC 5 cut(s) 309, 338, 562, 904, 965
AfiI CCNNNNNNNGG 2 cut(s) 497, 605
AflII CTTAAG 1 cut(s) 29
AflIII ACRYGT 3 cut(s) 628, 842, 920
AgsI TTSAA 9 cut(s) 412, 474, 484, 697, 704, 787, 973, 1000, 1073
AhdI GACNNNNNGTC 2 cut(s) 250, 853
AjnI CCWGG 1 cut(s) 598
AjuI GAANNNNNNNTTGG 2 cut(s) 1139, 1171
AleI CACNNNNGTG 2 cut(s) 882, 959
AluBI AGCT 8 cut(s) 103, 142, 208, 293, 315, 406, 497, 719
AluI AGCT 8 cut(s) 103, 142, 208, 293, 315, 406, 497, 719
Alw21I GWGCWC 3 cut(s) 210, 842, 895
Alw26I GTCTC 3 cut(s) 113, 428, 690
AlwNI CAGNNNCTG 1 cut(s) 268
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 3 cut(s) 20, 139, 623
ApoI RAATTY 1 cut(s) 1039
Asp700I GAANNNNTTC 2 cut(s) 12, 761
AsuC2I CCSGG 1 cut(s) 897
AsuHPI GGTGA 1 cut(s) 456
BanII GRGCYC 1 cut(s) 210
BauI CACGAG 1 cut(s) 57
BbrPI CACGTG 1 cut(s) 923
BbsI GAAGAC 2 cut(s) 546, 625
Bbv12I GWGCWC 3 cut(s) 210, 842, 895
BbvI GCAGC 3 cut(s) 32, 151, 635
BccI CCATC 2 cut(s) 500, 1137
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 600
BclI TGATCA 2 cut(s) 174, 751
BcnI CCSGG 1 cut(s) 897
BcoDI GTCTC 3 cut(s) 113, 428, 690
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 492
BfrI CTTAAG 1 cut(s) 29
BfuAI ACCTGC 1 cut(s) 791
BisI GCNGC 4 cut(s) 21, 140, 624, 1098
BlsI GCNGC 4 cut(s) 22, 141, 625, 1099
Bme1390I CCNGG 2 cut(s) 600, 897
BmeRI GACNNNNNGTC 2 cut(s) 250, 853
BmiI GGNNCC 1 cut(s) 952
BmrFI CCNGG 2 cut(s) 600, 897
BmrI ACTGGG 1 cut(s) 1198
BmsI GCATC 3 cut(s) 142, 255, 1036
BmuI ACTGGG 1 cut(s) 1198
BpiI GAAGAC 2 cut(s) 546, 625
BpmI CTGGAG 1 cut(s) 856
BpuEI CTTGAG 2 cut(s) 125, 283
BpuMI CCSGG 1 cut(s) 897
Bsa29I ATCGAT 1 cut(s) 373
BsaAI YACGTR 1 cut(s) 923
BsaXI ACNNNNNCTCC 2 cut(s) 829, 859
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 605
Bse1I ACTGG 2 cut(s) 193, 1204
Bse3DI GCAATG 4 cut(s) 192, 363, 636, 1087
BseBI CCWGG 1 cut(s) 600
BseCI ATCGAT 1 cut(s) 373
BseGI GGATG 3 cut(s) 238, 286, 1165
BseLI CCNNNNNNNGG 2 cut(s) 497, 605
BseMI GCAATG 4 cut(s) 192, 363, 636, 1087
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 2 cut(s) 193, 1204
BseRI GAGGAG 1 cut(s) 173
BseXI GCAGC 3 cut(s) 32, 151, 635
BseYI CCCAGC 1 cut(s) 741
BshFI GGCC 1 cut(s) 221
BshVI ATCGAT 1 cut(s) 373
BsiHKAI GWGCWC 3 cut(s) 210, 842, 895
BsiSI CCGG 1 cut(s) 896
BslFI GGGAC 1 cut(s) 859
BslI CCNNNNNNNGG 2 cut(s) 497, 605
BsmAI GTCTC 3 cut(s) 113, 428, 690
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 859
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 210, 842, 895
Bsp1407I TGTACA 1 cut(s) 963
Bsp143I GATC 2 cut(s) 174, 751
BspACI CCGC 2 cut(s) 564, 1097
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 1 cut(s) 159
BspDI ATCGAT 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 952
BspMI ACCTGC 1 cut(s) 791
BspTI CTTAAG 1 cut(s) 29
BsrDI GCAATG 4 cut(s) 192, 363, 636, 1087
BsrGI TGTACA 1 cut(s) 963
BsrI ACTGG 2 cut(s) 193, 1204
BssMI GATC 2 cut(s) 174, 751
BssSI CACGAG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 57
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 4 cut(s) 124, 580, 619, 657
Bst6I CTCTTC 2 cut(s) 496, 984
BstAFI CTTAAG 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 1055
BstAUI TGTACA 1 cut(s) 963
BstBAI YACGTR 1 cut(s) 923
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 1 cut(s) 146
BstEII GGTNACC 1 cut(s) 462
BstF5I GGATG 3 cut(s) 238, 286, 1165
BstKTI GATC 2 cut(s) 177, 754
BstMAI GTCTC 3 cut(s) 113, 428, 690
BstMBI GATC 2 cut(s) 174, 751
BstMWI GCNNNNNNNGC 1 cut(s) 1055
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 2 cut(s) 632, 846
BstPI GGTNACC 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 598, 895
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 3 cut(s) 32, 151, 635
BstV2I GAAGAC 2 cut(s) 546, 625
BstXI CCANNNNNNTGG 1 cut(s) 672
Bsu15I ATCGAT 1 cut(s) 373
BsuRI GGCC 1 cut(s) 221
BsuTUI ATCGAT 1 cut(s) 373
BtsCI GGATG 3 cut(s) 238, 286, 1165
BtsIMutI CAGTG 4 cut(s) 154, 200, 772, 954
BveI ACCTGC 1 cut(s) 791
Cac8I GCNNGC 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 268
ClaI ATCGAT 1 cut(s) 373
Csp6I GTAC 5 cut(s) 308, 337, 561, 903, 964
CviAII CATG 4 cut(s) 629, 747, 843, 858
CviQI GTAC 5 cut(s) 308, 337, 561, 903, 964
DdeI CTNAG 1 cut(s) 146
DpnI GATC 2 cut(s) 176, 753
DpnII GATC 2 cut(s) 174, 751
DriI GACNNNNNGTC 2 cut(s) 250, 853
Eam1104I CTCTTC 2 cut(s) 496, 984
Eam1105I GACNNNNNGTC 2 cut(s) 250, 853
EarI CTCTTC 2 cut(s) 496, 984
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 978
Eco72I CACGTG 1 cut(s) 923
Eco91I GGTNACC 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 208
EcoO65I GGTNACC 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 4 cut(s) 632, 750, 846, 861
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 1 cut(s) 859
FatI CATG 4 cut(s) 628, 746, 842, 857
FbaI TGATCA 2 cut(s) 174, 751
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 4 cut(s) 21, 140, 624, 1098
FokI GGATG 3 cut(s) 245, 293, 1172
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 4 cut(s) 21, 140, 624, 1098
FspBI CTAG 1 cut(s) 288
GluI GCNGC 4 cut(s) 21, 140, 624, 1098
GsaI CCCAGC 1 cut(s) 745
GsuI CTGGAG 1 cut(s) 856
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 896
Hin1II CATG 4 cut(s) 632, 750, 846, 861
HincII GTYRAC 2 cut(s) 244, 1138
HindII GTYRAC 2 cut(s) 244, 1138
HindIII AAGCTT 2 cut(s) 101, 313
HinfI GANTC 3 cut(s) 551, 603, 854
HpaII CCGG 1 cut(s) 896
HphI GGTGA 1 cut(s) 456
Hpy166II GTNNAC 5 cut(s) 244, 255, 421, 964, 1138
Hpy188I TCNGA 5 cut(s) 130, 264, 352, 756, 985
Hpy188III TCNNGA 3 cut(s) 59, 540, 835
Hpy8I GTNNAC 5 cut(s) 244, 255, 421, 964, 1138
HpyAV CCTTC 1 cut(s) 967
HpyCH4III ACNGT 4 cut(s) 124, 580, 619, 657
HpyCH4IV ACGT 2 cut(s) 922, 1123
HpyF10VI GCNNNNNNNGC 1 cut(s) 1055
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 2 cut(s) 922, 1123
Hsp92II CATG 4 cut(s) 632, 750, 846, 861
Ksp22I TGATCA 2 cut(s) 174, 751
Kzo9I GATC 2 cut(s) 174, 751
LmnI GCTCC 5 cut(s) 114, 403, 837, 890, 950
Lsp1109I GCAGC 3 cut(s) 32, 151, 635
LweI GCATC 3 cut(s) 142, 255, 1036
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 922, 1123
MaeIII GTNAC 7 cut(s) 59, 462, 709, 733, 845, 913, 1192
MalI GATC 2 cut(s) 176, 753
MboI GATC 2 cut(s) 174, 751
MboII GAAGA 7 cut(s) 424, 513, 546, 625, 938, 1001, 1142
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 3 cut(s) 210, 842, 895
MluCI AATT 7 cut(s) 132, 383, 474, 941, 967, 1039, 1065
MlyI GAGTC 3 cut(s) 560, 612, 863
MmeI TCCRAC 3 cut(s) 21, 508, 868
MnlI CCTC 6 cut(s) 64, 77, 151, 175, 352, 536
MroXI GAANNNNTTC 2 cut(s) 12, 761
MseI TTAA 4 cut(s) 30, 330, 342, 1020
MslI CAYNNNNRTG 2 cut(s) 882, 959
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 1 cut(s) 896
MspR9I CCNGG 2 cut(s) 600, 897
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 1 cut(s) 1055
NciI CCSGG 1 cut(s) 897
NdeII GATC 2 cut(s) 174, 751
NlaIII CATG 4 cut(s) 632, 750, 846, 861
NlaIV GGNNCC 1 cut(s) 952
NmuCI GTSAC 6 cut(s) 59, 462, 709, 733, 845, 913
NspI RCATGY 2 cut(s) 632, 846
OliI CACNNNNGTG 2 cut(s) 882, 959
PciI ACATGT 2 cut(s) 628, 842
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 2 cut(s) 12, 761
PflFI GACNNNGTC 2 cut(s) 124, 239
PkrI GCNGC 4 cut(s) 22, 141, 625, 1099
PleI GAGTC 3 cut(s) 559, 611, 862
PmaCI CACGTG 1 cut(s) 923
PmlI CACGTG 1 cut(s) 923
PpsI GAGTC 3 cut(s) 559, 611, 862
Ppu21I YACGTR 1 cut(s) 923
PscI ACATGT 2 cut(s) 628, 842
Psp124BI GAGCTC 1 cut(s) 210
Psp6I CCWGG 1 cut(s) 598
PspCI CACGTG 1 cut(s) 923
PspEI GGTNACC 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 741
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 1 cut(s) 952
PstNI CAGNNNCTG 1 cut(s) 268
PsyI GACNNNGTC 2 cut(s) 124, 239
RsaI GTAC 5 cut(s) 309, 338, 562, 904, 965
RsaNI GTAC 5 cut(s) 308, 337, 561, 903, 964
RseI CAYNNNNRTG 2 cut(s) 882, 959
SacI GAGCTC 1 cut(s) 210
SalI GTCGAC 1 cut(s) 242
SaqAI TTAA 4 cut(s) 30, 330, 342, 1020
SatI GCNGC 4 cut(s) 21, 140, 624, 1098
Sau3AI GATC 2 cut(s) 174, 751
SchI GAGTC 3 cut(s) 560, 612, 863
ScrFI CCNGG 2 cut(s) 600, 897
SduI GDGCHC 3 cut(s) 210, 842, 895
SfaNI GCATC 3 cut(s) 142, 255, 1036
SfcI CTRYAG 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 882, 959
SmlI CTYRAG 3 cut(s) 29, 104, 298
SmoI CTYRAG 3 cut(s) 29, 104, 298
Sse9I AATT 7 cut(s) 132, 383, 474, 941, 967, 1039, 1065
SsiI CCGC 2 cut(s) 564, 1097
SspMI CTAG 1 cut(s) 288
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 598, 895
TaaI ACNGT 4 cut(s) 124, 580, 619, 657
TaiI ACGT 2 cut(s) 925, 1126
TaqI TCGA 2 cut(s) 243, 373
TasI AATT 7 cut(s) 132, 383, 474, 941, 967, 1039, 1065
TatI WGTACW 3 cut(s) 336, 902, 963
TauI GCSGC 1 cut(s) 1100
Tru1I TTAA 4 cut(s) 30, 330, 342, 1020
Tru9I TTAA 4 cut(s) 30, 330, 342, 1020
TscAI CASTG 4 cut(s) 154, 200, 772, 961
TseFI GTSAC 6 cut(s) 59, 462, 709, 733, 845, 913
TseI GCWGC 3 cut(s) 20, 139, 623
Tsp45I GTSAC 6 cut(s) 59, 462, 709, 733, 845, 913
TspDTI ATGAA 5 cut(s) 297, 307, 625, 1002, 1164
TspGWI ACGGA 2 cut(s) 394, 872
TspRI CASTG 4 cut(s) 154, 200, 772, 961
Tth111I GACNNNGTC 2 cut(s) 124, 239
Vha464I CTTAAG 1 cut(s) 29
XapI RAATTY 1 cut(s) 1039
XceI RCATGY 2 cut(s) 632, 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 884
XmiI GTMKAC 1 cut(s) 243
XmnI GAANNNNTTC 2 cut(s) 12, 761
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.