RLG00000036828

Disease resistance protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
85333268 .. 85335344
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036828

Sequence Viewer

Length: 942 bp
ATGATGTGTTTTTTAGTTTCTCAGCTTTCCTCTCTGCTTTCCTCTCTGGTAAGTGGCTGCAAGATATTCGGGGTCCGGGTCAAGGACGGTACTGATTCGCAACCCGTGACCCGACAGTTCTTCCCGGTAGATGGATACTCGGAGGTGGAACTCACTCCTGAAGCTAGTGTTGCCGCCGGGACGGTCGCTACTTCCTCTTCTTCATCATCAGCCGTTGAGTGGAAGTATGATGTGTTTTTGAGTTTCAGGGGTCCTGACACTCGAAGGAGTATTACATCCGATCTATACCATCGGCTGCAAAACAAGAGAGGAATTACAACATTCATGGATGACCGAGATCTTCAAGTAGGGGATGCGATTTCTCCCGTTCTCTCAAAGGCAATTGAAGAATCAAGGTTTGCAATCCTTGTTCTGTCGGAAAACTATGCTTCTTCTACTTGGTGTTTGGAGGAACTGACAAAGATCTGTGAGTGCATGGAAGAAAACAACCGAATTTTTCCACTTTTCTATAATGTGGAACCCGAAAATATACGCCAAGCAAGCATTCCTCTCAATATCTTATCAGAACAAGATTCTTGGAAATTGTTTGTGAGAAATGCAAGGTCTTTTGAATCGACCATTTTTGAGGTTGTAGTGAGGAAGGTAGCAGGAGAATGTAGGGGTCTACCCATTGCACTGATAGCAGTTGCAAGGGCACTTGGAGATAAAGATCTGGCGGAATGGCAAAAAGCAGCTCAACAATTAGAGAAGTCGCAAATTGCCACCCCTGACCATGATGAAGATGCTTTCGAATGTATAAAATTAAGCTATGATTACTTGAAAGATGAGGACTACAAGTCATGCTTCTTGCTGTGTTGCCTATTTCCAGGAGATTATAACATCCCAATAGTTTGTGCTTGCTTATATTTATTGACACTCCCTGGCCTTATTTGCCAGGCTTAA

Protein Analysis

314

Amino Acids

35.04

Weight (kDa)

4.75

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 75 - 179 2.1e-34 TIR domain
TIR_2 PF13676 78 - 175 3.9e-17 TIR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 876
AccI GTMKAC 1 cut(s) 664
AciI CCGC 2 cut(s) 174, 716
AcsI RAATTY 1 cut(s) 492
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 3 cut(s) 82, 131, 219
AgsI TTSAA 4 cut(s) 344, 386, 611, 820
AhdI GACNNNNNGTC 1 cut(s) 835
AjnI CCWGG 3 cut(s) 865, 919, 933
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
AluBI AGCT 4 cut(s) 25, 164, 734, 807
AluI AGCT 4 cut(s) 25, 164, 734, 807
AoxI GGCC 1 cut(s) 922
ApeKI GCWGC 3 cut(s) 57, 295, 731
ApoI RAATTY 1 cut(s) 492
AspS9I GGNCC 2 cut(s) 73, 251
AsuC2I CCSGG 3 cut(s) 77, 125, 178
AsuII TTCGAA 1 cut(s) 789
AvaII GGWCC 2 cut(s) 73, 251
BaeGI GKGCMC 1 cut(s) 697
BarI GAAGNNNNNNTAC 2 cut(s) 256, 288
BbvI GCAGC 3 cut(s) 44, 282, 743
BccI CCATC 2 cut(s) 125, 297
BceAI ACGGC 1 cut(s) 197
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 3 cut(s) 867, 921, 935
BciVI GTATCC 1 cut(s) 128
BcnI CCSGG 3 cut(s) 77, 125, 178
BfaI CTAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 128
BglII AGATCT 3 cut(s) 337, 462, 709
BisI GCNGC 4 cut(s) 58, 174, 296, 732
BlsI GCNGC 4 cut(s) 59, 175, 297, 733
Bme1390I CCNGG 6 cut(s) 77, 125, 178, 867, 921, 935
Bme18I GGWCC 2 cut(s) 73, 251
BmeRI GACNNNNNGTC 1 cut(s) 835
BmgT120I GGNCC 2 cut(s) 73, 251
BmiI GGNNCC 3 cut(s) 74, 252, 519
BmrFI CCNGG 6 cut(s) 77, 125, 178, 867, 921, 935
BmsI GCATC 2 cut(s) 343, 772
Bpu14I TTCGAA 1 cut(s) 789
BpuMI CCSGG 3 cut(s) 77, 125, 178
BsaBI GATNNNNATC 1 cut(s) 708
BsaJI CCNNGG 1 cut(s) 919
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 131, 219
Bse3DI GCAATG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 708
BseBI CCWGG 3 cut(s) 867, 921, 935
BseDI CCNNGG 1 cut(s) 919
BseGI GGATG 4 cut(s) 275, 334, 358, 879
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 3 cut(s) 82, 131, 219
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 3 cut(s) 44, 282, 743
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 924
BsiEI CGRYCG 1 cut(s) 186
BsiSI CCGG 3 cut(s) 76, 125, 177
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 3 cut(s) 82, 131, 219
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 1 cut(s) 924
Bsp119I TTCGAA 1 cut(s) 789
Bsp1286I GDGCHC 1 cut(s) 697
Bsp143I GATC 4 cut(s) 280, 337, 462, 709
BspACI CCGC 2 cut(s) 174, 716
BspANI GGCC 1 cut(s) 924
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 74, 252, 519
BspT104I TTCGAA 1 cut(s) 789
BsrDI GCAATG 1 cut(s) 669
BssECI CCNNGG 1 cut(s) 919
BssMI GATC 4 cut(s) 280, 337, 462, 709
Bst2UI CCWGG 3 cut(s) 867, 921, 935
Bst4CI ACNGT 3 cut(s) 89, 117, 184
Bst6I CTCTTC 1 cut(s) 202
BstBI TTCGAA 1 cut(s) 789
BstC8I GCNNGC 2 cut(s) 541, 898
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 4 cut(s) 275, 334, 358, 879
BstKTI GATC 4 cut(s) 283, 340, 465, 712
BstMBI GATC 4 cut(s) 280, 337, 462, 709
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 4 cut(s) 170, 540, 680, 930
BstNI CCWGG 3 cut(s) 867, 921, 935
BstSCI CCNGG 6 cut(s) 75, 123, 176, 865, 919, 933
BstSLI GKGCMC 1 cut(s) 697
BstV1I GCAGC 3 cut(s) 44, 282, 743
BstX2I RGATCY 3 cut(s) 337, 462, 709
BstYI RGATCY 3 cut(s) 337, 462, 709
BsuI GTATCC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 924
BtsCI GGATG 4 cut(s) 275, 334, 358, 879
BtsIMutI CAGTG 1 cut(s) 674
Cac8I GCNNGC 2 cut(s) 541, 898
Cfr13I GGNCC 2 cut(s) 73, 251
Csp6I GTAC 1 cut(s) 90
CviAII CATG 4 cut(s) 325, 475, 773, 840
CviJI RGCY 9 cut(s) 25, 57, 164, 212, 295, 734, 807, 924, 938
CviKI_1 RGCY 9 cut(s) 25, 57, 164, 212, 295, 734, 807, 924, 938
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 1 cut(s) 21
DpnI GATC 4 cut(s) 282, 339, 464, 711
DpnII GATC 4 cut(s) 280, 337, 462, 709
DriI GACNNNNNGTC 1 cut(s) 835
Eam1104I CTCTTC 1 cut(s) 202
Eam1105I GACNNNNNGTC 1 cut(s) 835
EarI CTCTTC 1 cut(s) 202
EciI GGCGGA 1 cut(s) 731
Eco47I GGWCC 2 cut(s) 73, 251
Eco57I CTGAAG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 865, 919, 933
FaeI CATG 4 cut(s) 328, 478, 776, 843
FalI AAGNNNNNCTT 2 cut(s) 827, 859
FaqI GGGAC 1 cut(s) 193
FatI CATG 4 cut(s) 324, 474, 772, 839
FblI GTMKAC 1 cut(s) 664
Fnu4HI GCNGC 4 cut(s) 58, 174, 296, 732
FokI GGATG 4 cut(s) 262, 341, 365, 866
Fsp4HI GCNGC 4 cut(s) 58, 174, 296, 732
FspBI CTAG 1 cut(s) 165
GluI GCNGC 4 cut(s) 58, 174, 296, 732
HaeIII GGCC 1 cut(s) 924
HapII CCGG 3 cut(s) 76, 125, 177
Hin1II CATG 4 cut(s) 328, 478, 776, 843
HinfI GANTC 4 cut(s) 95, 389, 572, 611
HpaII CCGG 3 cut(s) 76, 125, 177
Hpy166II GTNNAC 1 cut(s) 665
Hpy188I TCNGA 4 cut(s) 142, 280, 418, 565
Hpy188III TCNNGA 2 cut(s) 158, 254
Hpy8I GTNNAC 1 cut(s) 665
HpyAV CCTTC 2 cut(s) 258, 634
HpyCH4III ACNGT 3 cut(s) 89, 117, 184
HpyCH4V TGCA 7 cut(s) 60, 298, 401, 474, 599, 674, 689
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 540, 680, 930
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 4 cut(s) 328, 478, 776, 843
Kzo9I GATC 4 cut(s) 280, 337, 462, 709
Lsp1109I GCAGC 3 cut(s) 44, 282, 743
LweI GCATC 2 cut(s) 343, 772
MaeI CTAG 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 106
MalI GATC 4 cut(s) 282, 339, 464, 711
MboI GATC 4 cut(s) 280, 337, 462, 709
MboII GAAGA 8 cut(s) 112, 189, 192, 332, 398, 423, 491, 791
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 3 cut(s) 337, 462, 709
MhlI GDGCHC 1 cut(s) 697
MluCI AATT 7 cut(s) 312, 381, 492, 581, 740, 756, 800
MmeI TCCRAC 1 cut(s) 396
MseI TTAA 2 cut(s) 803, 940
MspI CCGG 3 cut(s) 76, 125, 177
MspR9I CCNGG 6 cut(s) 77, 125, 178, 867, 921, 935
MunI CAATTG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 3 cut(s) 867, 921, 935
MwoI GCNNNNNNNGC 4 cut(s) 170, 540, 680, 930
NciI CCSGG 3 cut(s) 77, 125, 178
NdeII GATC 4 cut(s) 280, 337, 462, 709
NlaIII CATG 4 cut(s) 328, 478, 776, 843
NlaIV GGNNCC 3 cut(s) 74, 252, 519
NmuCI GTSAC 1 cut(s) 106
NspV TTCGAA 1 cut(s) 789
PctI GAATGC 1 cut(s) 543
PfeI GAWTC 4 cut(s) 95, 389, 572, 611
PfoI TCCNGGA 1 cut(s) 865
PkrI GCNGC 4 cut(s) 59, 175, 297, 733
PpuMI RGGWCCY 1 cut(s) 251
PsiI TTATAA 1 cut(s) 876
Psp5II RGGWCCY 1 cut(s) 251
Psp6I CCWGG 3 cut(s) 865, 919, 933
PspGI CCWGG 3 cut(s) 865, 919, 933
PspN4I GGNNCC 3 cut(s) 74, 252, 519
PspPI GGNCC 2 cut(s) 73, 251
PspPPI RGGWCCY 1 cut(s) 251
PsuI RGATCY 3 cut(s) 337, 462, 709
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 803, 940
SatI GCNGC 4 cut(s) 58, 174, 296, 732
Sau3AI GATC 4 cut(s) 280, 337, 462, 709
Sau96I GGNCC 2 cut(s) 73, 251
ScrFI CCNGG 6 cut(s) 77, 125, 178, 867, 921, 935
SduI GDGCHC 1 cut(s) 697
SetI ASST 9 cut(s) 27, 147, 166, 398, 605, 630, 645, 736, 809
SfaNI GCATC 2 cut(s) 343, 772
SfuI TTCGAA 1 cut(s) 789
SinI GGWCC 2 cut(s) 73, 251
Sse9I AATT 7 cut(s) 312, 381, 492, 581, 740, 756, 800
SsiI CCGC 2 cut(s) 174, 716
SspMI CTAG 1 cut(s) 165
StyD4I CCNGG 6 cut(s) 75, 123, 176, 865, 919, 933
TaaI ACNGT 3 cut(s) 89, 117, 184
TaqI TCGA 3 cut(s) 262, 614, 789
TaqII GACCGA 1 cut(s) 348
TasI AATT 7 cut(s) 312, 381, 492, 581, 740, 756, 800
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 4 cut(s) 95, 389, 572, 611
Tru1I TTAA 2 cut(s) 803, 940
Tru9I TTAA 2 cut(s) 803, 940
TscAI CASTG 1 cut(s) 681
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 3 cut(s) 57, 295, 731
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 192, 313, 792
TspRI CASTG 1 cut(s) 681
VpaK11BI GGWCC 2 cut(s) 73, 251
XapI RAATTY 1 cut(s) 492
XmiI GTMKAC 1 cut(s) 664
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.