Rmu_sc0007793.1_g000030

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007793.1
OG0000466
Physical Location & Seq
Forward (+)
143525 .. 144034
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007793.1_g000030.1.cds

Sequence Viewer

Length: 510 bp
atggcctcgagctcccaaacacttccttcgtcatcagctcctcagtggaagcatgatgtgtttctcagcttccggggtgaagacacccggaagggtattgtatcctctttataccatgaattgaaaaccagaggaatacaaacattcatggatgaccaagggcttcagcaagggatgcctatttctccaagtctcctaacagcaattgaggaatccaggtgtgcagtcgttcttctatccccaaactatgcttcttctacatggtgtttggatgaacttgcaaagattcttcaatgctctgaagccaacaagacactggttctaccaattttttataatgtggatccctctcatgtgcgacatcaaatggcaagttttgcagaagccttcactaagcatgaagagaggtataggcaaggcaatgatgatgcagagaaggtgaacaagtggagagctgctttaacacaagtggccaatctctctgggttggattcaaacaaatttgggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

169

Amino Acids

18.87

Weight (kDa)

6.19

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g35831 FvH4_3g44041 FvH4_5g15070 FvH4_5g15070 FvH4_7g08891
malus_domestica MD12G1125500.v1.1
prunus_persica Prupe.2G112700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322841 RchiOBHm_Chr1g0323391 RchiOBHm_Chr1g0327991 RchiOBHm_Chr1g0328961 RchiOBHm_Chr5g0080091 RchiOBHm_Chr6g0244841 RchiOBHm_Chr6g0250491
rosa_laevigata RLG00000024005 RLG00000024011 RLG00000024013 RLG00000024016 RLG00000024020 RLG00000024393 RLG00000030320 RLG00000030327 RLG00000030347 RLG00000030348 RLG00000030353 RLG00000030374 RLG00000034792 RLG00000035452 RLG00000036087 RLG00000036760 RLG00000036762 RLG00000036764 RLG00000036766 RLG00000036814 RLG00000036815 RLG00000036818 RLG00000036827 RLG00000036828 RLG00000036830 RLG00000036831 RLG00000036833 RLG00000036835
rosa_multiflora Rmu_co8082032.1_g000001 Rmu_co8162460.1_g000001 Rmu_co8167342.1_g000001 Rmu_co8180788.1_g000001 Rmu_co8300873.1_g000001 Rmu_sc0000252.1_g000008 Rmu_sc0000588.1_g000050 Rmu_sc0000595.1_g000020 Rmu_sc0000749.1_g000016 Rmu_sc0000749.1_g000039 Rmu_sc0000908.1_g000020 Rmu_sc0001148.1_g000040 Rmu_sc0001148.1_g000041 Rmu_sc0001226.1_g000014 Rmu_sc0001639.1_g000003 Rmu_sc0002075.1_g000005 Rmu_sc0002132.1_g000044 Rmu_sc0002634.1_g000026 Rmu_sc0003418.1_g000010 Rmu_sc0007793.1_g000030 Rmu_sc0012920.1_g000001 Rmu_sc0016164.1_g000016 Rmu_sc0019190.1_g000006 Rmu_sc0019291.1_g000001 Rmu_sc0021169.1_g000003 Rmu_sc0040474.1_g000001
rosa_roxburghii Rroxscaffold_1G00003030 Rroxscaffold_1G00003240 Rroxscaffold_1G00003280 Rroxscaffold_1G00003530 Rroxscaffold_1G00003600 Rroxscaffold_1G00003920 Rroxscaffold_3G00235100 Rroxscaffold_3G00240330 Rroxscaffold_4G00326470 Rroxscaffold_4G00326760 Rroxscaffold_4G00327070 Rroxscaffold_6G00393840 Rroxscaffold_6G00408110 Rroxscaffold_6G00408180
rosa_rugosa Rorug01G0036300 Rorug01G0038900 Rorug02G0108200 Rorug05G0459600 Rorug07G0125600 Rorug07G0204700
rosa_samantha Rh1DG060500 Rh6BG033900
rosa_wichuraiana Rw0G008150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AclWI GGATC 2 cut(s) 338, 351
AcoI YGGCCR 1 cut(s) 471
AcsI RAATTY 1 cut(s) 500
AcuI CTGAAG 2 cut(s) 149, 321
AgsI TTSAA 3 cut(s) 124, 293, 495
AjnI CCWGG 1 cut(s) 215
AjuI GAANNNNNNNTTGG 2 cut(s) 235, 267
AluBI AGCT 4 cut(s) 12, 38, 69, 455
AluI AGCT 4 cut(s) 12, 38, 69, 455
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 338, 351
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 2 cut(s) 3, 471
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 500
AsuC2I CCSGG 2 cut(s) 74, 88
AsuHPI GGTGA 2 cut(s) 89, 451
AvaI CYCGRG 1 cut(s) 7
BalI TGGCCA 1 cut(s) 473
BamHI GGATCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 442
BciT130I CCWGG 1 cut(s) 217
BciVI GTATCC 1 cut(s) 112
BcnI CCSGG 2 cut(s) 74, 88
BcoDI GTCTC 1 cut(s) 197
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 3 cut(s) 74, 88, 217
BmeT110I CYCGRG 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 3 cut(s) 74, 88, 217
BmsI GCATC 2 cut(s) 165, 418
BpiI GAAGAC 1 cut(s) 87
BpuMI CCSGG 2 cut(s) 74, 88
BsaJI CCNNGG 2 cut(s) 73, 157
Bse1I ACTGG 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 427
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 73, 157
BseGI GGATG 3 cut(s) 157, 180, 277
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 56, 79
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 442
BsgI GTGCAG 1 cut(s) 243
BshFI GGCC 2 cut(s) 5, 473
BsiHKAI GWGCWC 1 cut(s) 14
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 2 cut(s) 73, 88
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 2 cut(s) 5, 473
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 343
BspANI GGCC 2 cut(s) 5, 473
BspCNI CTCAG 2 cut(s) 55, 78
BspLI GGNNCC 1 cut(s) 345
BspPI GGATC 2 cut(s) 338, 351
BsrDI GCAATG 1 cut(s) 427
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 73, 157
BssMI GATC 1 cut(s) 343
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 396
BstAPI GCANNNNNTGC 2 cut(s) 175, 377
BstDEI CTNAG 3 cut(s) 42, 65, 393
BstF5I GGATG 3 cut(s) 157, 180, 277
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 2 cut(s) 175, 377
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 72, 86, 215
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 2 cut(s) 5, 473
BtsCI GGATG 3 cut(s) 157, 180, 277
BtsIMutI CAGTG 2 cut(s) 50, 314
CviAII CATG 6 cut(s) 53, 116, 148, 261, 353, 398
CviJI RGCY 9 cut(s) 5, 12, 38, 69, 163, 305, 386, 455, 473
CviKI_1 RGCY 9 cut(s) 5, 12, 38, 69, 163, 305, 386, 455, 473
DdeI CTNAG 3 cut(s) 42, 65, 393
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Ecl136II GAGCTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 12
Eco57I CTGAAG 2 cut(s) 149, 321
Eco88I CYCGRG 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 6 cut(s) 56, 119, 151, 264, 356, 401
FatI CATG 6 cut(s) 52, 115, 147, 260, 352, 397
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 3 cut(s) 164, 187, 284
FriOI GRGCYC 1 cut(s) 14
Fsp4HI GCNGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 456
HaeIII GGCC 2 cut(s) 5, 473
HapII CCGG 2 cut(s) 73, 88
Hin1II CATG 6 cut(s) 56, 119, 151, 264, 356, 401
HinfI GANTC 3 cut(s) 212, 286, 491
HpaII CCGG 2 cut(s) 73, 88
HphI GGTGA 2 cut(s) 89, 451
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 1 cut(s) 301
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 4 cut(s) 36, 85, 397, 430
HpyCH4V TGCA 4 cut(s) 224, 281, 380, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 377
HpyF3I CTNAG 3 cut(s) 42, 65, 393
Hsp92II CATG 6 cut(s) 56, 119, 151, 264, 356, 401
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 2 cut(s) 17, 43
LpnPI CCDG 7 cut(s) 86, 101, 142, 202, 229, 302, 468
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 2 cut(s) 165, 418
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 5 cut(s) 92, 224, 246, 281, 413
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 14
MlsI TGGCCA 1 cut(s) 473
MluCI AATT 4 cut(s) 119, 204, 327, 500
MluNI TGGCCA 1 cut(s) 473
MmeI TCCRAC 1 cut(s) 468
MnlI CCTC 7 cut(s) 16, 51, 115, 125, 202, 358, 399
Mox20I TGGCCA 1 cut(s) 473
MscI TGGCCA 1 cut(s) 473
MseI TTAA 1 cut(s) 461
Msp20I TGGCCA 1 cut(s) 473
MspI CCGG 2 cut(s) 73, 88
MspR9I CCNGG 3 cut(s) 74, 88, 217
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 175, 377
NciI CCSGG 2 cut(s) 74, 88
NdeII GATC 1 cut(s) 343
NlaIII CATG 6 cut(s) 56, 119, 151, 264, 356, 401
NlaIV GGNNCC 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 7
PfeI GAWTC 3 cut(s) 212, 286, 491
PkrI GCNGC 1 cut(s) 457
PsiI TTATAA 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 345
PspXI VCTCGAGB 1 cut(s) 7
PsuI RGATCY 1 cut(s) 343
SacI GAGCTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 1 cut(s) 343
ScrFI CCNGG 3 cut(s) 74, 88, 217
SduI GDGCHC 1 cut(s) 14
SetI ASST 7 cut(s) 14, 40, 71, 221, 410, 441, 457
SfaNI GCATC 2 cut(s) 165, 418
Sfr274I CTCGAG 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 4 cut(s) 119, 204, 327, 500
SstI GAGCTC 1 cut(s) 14
StyD4I CCNGG 3 cut(s) 72, 86, 215
StyI CCWWGG 1 cut(s) 157
TaqI TCGA 1 cut(s) 8
TasI AATT 4 cut(s) 119, 204, 327, 500
TfiI GAWTC 3 cut(s) 212, 286, 491
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 2 cut(s) 50, 321
TseI GCWGC 1 cut(s) 455
TspDTI ATGAA 4 cut(s) 132, 136, 288, 414
TspRI CASTG 2 cut(s) 50, 321
XapI RAATTY 1 cut(s) 500
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.