RchiOBHm_Chr7g0179011

S-adenosylmethionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000442
Physical Location & Seq
Forward (+)
1485003 .. 1485461
459 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGGCAGCAGAGGATACCAGTAAAGTCTGTGAAGCACATCCTATGACTGGTGGAGATGGCCCCAACAGCTATGCCAAGAACTCCACTTTCCAGAGAGGTGGTGTGGATGCTGCCAAAGAACTTTTGAGCAATGCAATTGCAGAGAAGCTTGACATACAAATTTTTCCTTCCAACACTTTCGTGTGGTGGATTTGGGTTGCTCTACTGGACCAAATACATTTCGGGCAGTTGAAAACATTCTTGAAGCTGTGGAAGCCAAGTTCCAAAGTCAAGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

92

Amino Acids

10.18

Weight (kDa)

7.88

Isoelectric Point (pI)

16.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000442)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g43021 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46860 FvH4_6g46882 FvH4_6g51201
rosa_chinensis RchiOBHm_Chr2g0171801 RchiOBHm_Chr6g0301581 RchiOBHm_Chr7g0179011
rosa_laevigata RLG00000005529 RLG00000009488 RLG00000017141 RLG00000019517 RLG00000022054 RLG00000022057 RLG00000022071 RLG00000022073 RLG00000022076 RLG00000022284 RLG00000023212 RLG00000023370 RLG00000024583 RLG00000027622 RLG00000033172
rosa_multiflora Rmu_sc0000888.1_g000012 Rmu_sc0002026.1_g000021
rosa_roxburghii Rroxscaffold_1G00033790 Rroxscaffold_2G00080150 Rroxscaffold_2G00080220 Rroxscaffold_2G00080240 Rroxscaffold_2G00080330 Rroxscaffold_2G00080440 Rroxscaffold_2G00080470 Rroxscaffold_4G00323360 Rroxscaffold_5G00345900
rosa_rugosa Rorug02G0085600 Rorug02G0555900 Rorug02G0556000 Rorug02G0556200 Rorug02G0556300
rosa_samantha Rh1AG323200 Rh1BG273400 Rh2AG630700 Rh2AG630900 Rh2AG631900 Rh2AG636400 Rh2BG636800 Rh2BG641800 Rh2BG641900 Rh2BG642000 Rh2BG643800 Rh2BG644200 Rh2BG644700 Rh2BG645400 Rh2BG649800 Rh2CG610100 Rh2CG610200 Rh2CG610900 Rh2CG611000 Rh2CG611100 Rh2CG611800 Rh2CG612100 Rh2CG612300 Rh2CG612400 Rh2DG357300 Rh2DG652600 Rh2DG652800 Rh2DG652900 Rh2DG653100 Rh2DG658100 Rh2DG659200 Rh2DG659300 Rh2DG659800 Rh2DG660100 Rh2DG660300 Rh2DG660400 Rh3AG273000 Rh3DG210900 Rh4AG004400 Rh4AG104800 Rh4AG105200 Rh4AG433400 Rh5AG430100 Rh5BG445500 Rh6AG494800 Rh6DG386400 Rh7AG193900 Rh7CG200400
rosa_wichuraiana Rw2G052220 Rw2G052280 Rw2G052290 Rw2G052320 Rw2G052330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 2 cut(s) 232, 244
AleI CACNNNNGTG 1 cut(s) 179
AloI GAACNNNNNNTCC 2 cut(s) 244, 276
AluBI AGCT 3 cut(s) 69, 148, 247
AluI AGCT 3 cut(s) 69, 148, 247
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 5, 110
ApoI RAATTY 1 cut(s) 159
Asp700I GAANNNNTTC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 59, 208
AvaII GGWCC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 17, 97
BccI CCATC 1 cut(s) 50
BciVI GTATCC 1 cut(s) 7
BfuI GTATCC 1 cut(s) 7
BisI GCNGC 2 cut(s) 6, 111
BlsI GCNGC 2 cut(s) 7, 112
Bme18I GGWCC 1 cut(s) 208
BmgT120I GGNCC 2 cut(s) 59, 208
BmiI GGNNCC 1 cut(s) 61
BmsI GCATC 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 3 cut(s) 18, 52, 210
Bse3DI GCAATG 1 cut(s) 136
BseGI GGATG 2 cut(s) 37, 112
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 136
BseNI ACTGG 3 cut(s) 18, 52, 210
BseXI GCAGC 2 cut(s) 17, 97
BshFI GGCC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 60
BspANI GGCC 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 136
BsrI ACTGG 3 cut(s) 18, 52, 210
BstF5I GGATG 2 cut(s) 37, 112
BstMWI GCNNNNNNNGC 2 cut(s) 66, 253
BstV1I GCAGC 2 cut(s) 17, 97
BstXI CCANNNNNNTGG 1 cut(s) 98
BsuI GTATCC 1 cut(s) 7
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 2 cut(s) 37, 112
Cfr13I GGNCC 2 cut(s) 59, 208
CviJI RGCY 6 cut(s) 60, 69, 148, 247, 256, 276
CviKI_1 RGCY 6 cut(s) 60, 69, 148, 247, 256, 276
Eco47I GGWCC 1 cut(s) 208
FaiI YATR 3 cut(s) 44, 72, 155
Fnu4HI GCNGC 2 cut(s) 6, 111
FokI GGATG 2 cut(s) 24, 119
Fsp4HI GCNGC 2 cut(s) 6, 111
GluI GCNGC 2 cut(s) 6, 111
HaeIII GGCC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 146
Hpy188III TCNNGA 2 cut(s) 91, 241
HpyAV CCTTC 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 134, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 253
LpnPI CCDG 4 cut(s) 31, 33, 104, 191
Lsp1109I GCAGC 2 cut(s) 17, 97
LweI GCATC 1 cut(s) 97
MfeI CAATTG 1 cut(s) 135
MluCI AATT 2 cut(s) 135, 159
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 2 cut(s) 4, 89
MroXI GAANNNNTTC 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 179
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 66, 253
NlaIV GGNNCC 1 cut(s) 61
OliI CACNNNNGTG 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 7, 112
PspN4I GGNNCC 1 cut(s) 61
PspPI GGNCC 2 cut(s) 59, 208
RseI CAYNNNNRTG 1 cut(s) 179
SatI GCNGC 2 cut(s) 6, 111
Sau96I GGNCC 2 cut(s) 59, 208
SetI ASST 4 cut(s) 71, 100, 150, 249
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 2 cut(s) 135, 159
TasI AATT 2 cut(s) 135, 159
TseI GCWGC 2 cut(s) 5, 110
VpaK11BI GGWCC 1 cut(s) 208
XapI RAATTY 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.