RchiOBHm_Chr1g0341831

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000294
Physical Location & Seq
Reverse (-)
33653861 .. 33655053
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 936 bp
ATGCGCAGTGATCAAGCTGCCGAAGTTAGGGGAATCAGTACACTTATTGAAGTATTCAAATGGAGGGATGTTATAATTTTATATGATAACAAAGAATATGAGAAAGACTTCATTCCATCATTAGTCAACTCTTTCCAAGAGATCACACATCGGAGTGTTTCATACAAGAGTTCCAATATTGCTTCCTGCTCATCAAATGAAGAAATCATTGAAGAGCTCCAAAAGCTGACGAGATTGAAGATTAAGGTATTTGTGGTGCATGTTGCAGATGGGATCTGGGCATATGATGCAACTTGGGCTCTAGCAGAAGCAGTTCAAAGAGCAAGGCTTAAAACTTCTACCACTAGATCCTCCAAAGATGGAACTGTGCTTCTTAGAGAGATTTTGCAGACTAGATTTAAAAGTTTAAGTGGTGAAATTCAATATGTGAATGGGAAACTGATTCCATCAGAACCATTTGAGATAGTTAATGTTATTGGAAAAGGTGAGATCAAAAGGATCGGATTTTGGCCTTGCAAAGAAGAAGTAAAATCCGGAAAAGGGTCACCCCAGCAGCAAACTATTCATAATGGGAGAAATTTAGCTTCTACAATTGATCTTGAAAGAATCATATGGCCTGGAGGTTCCAGGAGGGAATTGAGTAGTAGTGAAACAATTAAACTAAGAATTGGTGTTCCAATGAGATTCGGGTTCAAGGAACCTGTTCGTGTCGAGCACGATCTTGAAACCAATATAACTCATGTCACTGGCTTCTCTATAGATGTATTCAAAGATGCGATAGGAGCTTTGCCGTATGAAGTGCAGTACGAGTTTATTCCATTTGAGGATGCCAGTGGAAATTCTGCAGGGACTTTTAATAATCTTGTTTACCAGGTTTATCTCAAGGTACAGATATGCTTTAACTTACTATTACTAGCTCGTTTGTTAAGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

311

Amino Acids

35.31

Weight (kDa)

8.24

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 5 - 89 1.4e-08 Receptor family ligand binding region
ANF_receptor PF01094 91 - 159 2.2e-09 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07520 AT5G48400 AT5G48400 AT5G48410 AT5G48410 AT5G48410 AT5G48410
fragaria_vesca FvH4_1g26430 FvH4_7g07770 FvH4_7g07820 FvH4_7g07830 FvH4_7g07830
malus_domestica MD02G1232900.v1.1 MD02G1233100.v1.1 MD07G1080800.v1.1
prunus_persica Prupe.2G105100_v2.0.a1 Prupe.2G105200_v2.0.a1 Prupe.2G105300_v2.0.a1 Prupe.2G105400_v2.0.a1 Prupe.2G105500_v2.0.a1 Prupe.2G105600_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105700_v2.0.a1 Prupe.2G105800_v2.0.a1
pyrus_communis pycom02g20100 pycom07g06420
rosa_chinensis RchiOBHm_Chr1g0341721 RchiOBHm_Chr1g0341731 RchiOBHm_Chr1g0341751 RchiOBHm_Chr1g0341761 RchiOBHm_Chr1g0341831 RchiOBHm_Chr1g0341851 RchiOBHm_Chr1g0341911 RchiOBHm_Chr1g0342001 RchiOBHm_Chr1g0342301 RchiOBHm_Chr5g0063031 RchiOBHm_Chr5g0063061
rosa_laevigata RLG00000029107 RLG00000029109 RLG00000029110 RLG00000029111 RLG00000029123 RLG00000029125 RLG00000029131 RLG00000029136 RLG00000029150 RLG00000029650 RLG00000029651 RLG00000035598
rosa_multiflora Rmu_sc0000696.1_g000008 Rmu_sc0001055.1_g000009 Rmu_sc0001055.1_g000014 Rmu_sc0001547.1_g000003 Rmu_sc0002161.1_g000003 Rmu_sc0002302.1_g000023 Rmu_sc0002322.1_g000082 Rmu_sc0004658.1_g000002 Rmu_sc0005331.1_g000003 Rmu_sc0007655.1_g000001 Rmu_sc0007655.1_g000003 Rmu_sc0018911.1_g000004 Rmu_sc0018911.1_g000011 Rmu_sc0034500.1_g000001
rosa_roxburghii Rroxscaffold_4G00312490 Rroxscaffold_4G00312540 Rroxscaffold_4G00312660 Rroxscaffold_4G00312720 Rroxscaffold_4G00312820 Rroxscaffold_4G00312930
rosa_rugosa Rorug01G0151800.1 Rorug01G0151900.1 Rorug01G0152000.1 Rorug01G0154000.1 Rorug01G0154100.1 Rorug05G0353600 Rorug05G0353700 Rorug05G0353800
rosa_samantha Rh1AG166600 Rh1AG168100 Rh1AG169100 Rh1AG169200 Rh1AG169600 Rh1AG169800 Rh1BG132800 Rh1BG132900 Rh1BG133600 Rh1BG133700 Rh1BG134800 Rh1BG135300 Rh1BG135500 Rh1BG135900 Rh1BG136000 Rh1BG136100 Rh1BG136400 Rh1BG137300 Rh1BG137600 Rh1BG137800 Rh1CG155000 Rh1CG155600 Rh1CG156900 Rh1CG157500 Rh1CG157800 Rh1CG158100 Rh1DG167700 Rh1DG168200 Rh1DG168900 Rh1DG169000 Rh1DG169500 Rh5AG414400 Rh5BG429200 Rh5CG452600 Rh5DG379600 Rh5DG442600 Rh5DG442700
rosa_wichuraiana Rw0G014260 Rw0G017550 Rw1G013900 Rw1G014090 Rw1G014110 Rw1G014130 Rw1G014150 Rw5G038950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
Acc16I TGCGCA 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 533
AclWI GGATC 3 cut(s) 281, 342, 506
AcsI RAATTY 3 cut(s) 417, 577, 838
AfaI GTAC 3 cut(s) 40, 806, 888
AfiI CCNNNNNNNGG 2 cut(s) 27, 540
AjnI CCWGG 3 cut(s) 616, 626, 870
AluBI AGCT 6 cut(s) 17, 217, 226, 584, 785, 917
AluI AGCT 6 cut(s) 17, 217, 226, 584, 785, 917
Alw21I GWGCWC 2 cut(s) 219, 717
AlwI GGATC 3 cut(s) 281, 342, 506
Aor13HI TCCGGA 1 cut(s) 533
AoxI GGCC 2 cut(s) 509, 614
ApeKI GCWGC 2 cut(s) 17, 553
ApoI RAATTY 3 cut(s) 417, 577, 838
Asp700I GAANNNNTTC 3 cut(s) 107, 312, 702
AspLEI GCGC 1 cut(s) 6
AsuHPI GGTGA 3 cut(s) 425, 497, 537
BanII GRGCYC 2 cut(s) 219, 301
Bbv12I GWGCWC 2 cut(s) 219, 717
BbvI GCAGC 2 cut(s) 4, 565
BccI CCATC 4 cut(s) 124, 263, 353, 454
BceAI ACGGC 1 cut(s) 775
BciT130I CCWGG 3 cut(s) 618, 628, 872
BclI TGATCA 1 cut(s) 10
BfaI CTAG 4 cut(s) 302, 345, 393, 914
BfmI CTRYAG 2 cut(s) 756, 843
BisI GCNGC 2 cut(s) 18, 554
BlsI GCNGC 2 cut(s) 19, 555
Bme1390I CCNGG 3 cut(s) 618, 628, 872
BmiI GGNNCC 2 cut(s) 625, 699
BmrFI CCNGG 3 cut(s) 618, 628, 872
BmsI GCATC 3 cut(s) 277, 763, 817
BpmI CTGGAG 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 866
BsaWI WCCGGW 1 cut(s) 533
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 540
Bse1I ACTGG 2 cut(s) 751, 831
BseAI TCCGGA 1 cut(s) 533
BseBI CCWGG 3 cut(s) 618, 628, 872
BseGI GGATG 2 cut(s) 73, 832
BseLI CCNNNNNNNGG 2 cut(s) 27, 540
BseNI ACTGG 2 cut(s) 751, 831
BseXI GCAGC 2 cut(s) 4, 565
BseYI CCCAGC 1 cut(s) 549
BsgI GTGCAG 1 cut(s) 821
BshFI GGCC 2 cut(s) 511, 616
BsiHKAI GWGCWC 2 cut(s) 219, 717
BsiSI CCGG 1 cut(s) 534
BslFI GGGAC 1 cut(s) 862
BslI CCNNNNNNNGG 2 cut(s) 27, 540
BsmFI GGGAC 1 cut(s) 862
BsnI GGCC 2 cut(s) 511, 616
Bsp1286I GDGCHC 3 cut(s) 219, 301, 717
Bsp13I TCCGGA 1 cut(s) 533
Bsp143I GATC 8 cut(s) 10, 141, 273, 347, 489, 498, 595, 718
BspANI GGCC 2 cut(s) 511, 616
BspEI TCCGGA 1 cut(s) 533
BspLI GGNNCC 2 cut(s) 625, 699
BspMAI CTGCAG 1 cut(s) 847
BspPI GGATC 3 cut(s) 281, 342, 506
BspQI GCTCTTC 1 cut(s) 207
BsrI ACTGG 2 cut(s) 751, 831
BssMI GATC 8 cut(s) 10, 141, 273, 347, 489, 498, 595, 718
Bst2UI CCWGG 3 cut(s) 618, 628, 872
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 207
BstAPI GCANNNNNTGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 374, 662
BstEII GGTNACC 1 cut(s) 543
BstF5I GGATG 2 cut(s) 73, 832
BstHHI GCGC 1 cut(s) 6
BstKTI GATC 8 cut(s) 13, 144, 276, 350, 492, 501, 598, 721
BstMBI GATC 8 cut(s) 10, 141, 273, 347, 489, 498, 595, 718
BstMWI GCNNNNNNNGC 4 cut(s) 223, 287, 296, 782
BstNI CCWGG 3 cut(s) 618, 628, 872
BstNSI RCATGY 1 cut(s) 263
BstPI GGTNACC 1 cut(s) 543
BstSCI CCNGG 3 cut(s) 616, 626, 870
BstSFI CTRYAG 2 cut(s) 756, 843
BstV1I GCAGC 2 cut(s) 4, 565
BstX2I RGATCY 2 cut(s) 273, 347
BstYI RGATCY 2 cut(s) 273, 347
BsuRI GGCC 2 cut(s) 511, 616
BtsCI GGATG 2 cut(s) 73, 832
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 3 cut(s) 13, 744, 838
CfoI GCGC 1 cut(s) 6
CsiI ACCWGGT 1 cut(s) 870
Csp6I GTAC 3 cut(s) 39, 805, 887
CviAII CATG 2 cut(s) 260, 740
CviQI GTAC 3 cut(s) 39, 805, 887
DdeI CTNAG 2 cut(s) 374, 662
DpnI GATC 8 cut(s) 12, 143, 275, 349, 491, 500, 597, 720
DpnII GATC 8 cut(s) 10, 141, 273, 347, 489, 498, 595, 718
DraI TTTAAA 1 cut(s) 400
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 2 cut(s) 219, 301
Eco53kI GAGCTC 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 217
EcoO65I GGTNACC 1 cut(s) 543
EcoRII CCWGG 3 cut(s) 616, 626, 870
EcoT38I GRGCYC 2 cut(s) 219, 301
FaeI CATG 2 cut(s) 263, 743
FaqI GGGAC 1 cut(s) 862
FatI CATG 2 cut(s) 259, 739
FauNDI CATATG 2 cut(s) 283, 611
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 18, 554
FokI GGATG 2 cut(s) 80, 839
FriOI GRGCYC 2 cut(s) 219, 301
Fsp4HI GCNGC 2 cut(s) 18, 554
FspBI CTAG 4 cut(s) 302, 345, 393, 914
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 1 cut(s) 5
GluI GCNGC 2 cut(s) 18, 554
GsaI CCCAGC 1 cut(s) 553
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 2 cut(s) 511, 616
HapII CCGG 1 cut(s) 534
HhaI GCGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 263, 743
Hin6I GCGC 1 cut(s) 4
HinP1I GCGC 1 cut(s) 4
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 4 cut(s) 33, 442, 606, 684
HpaII CCGG 1 cut(s) 534
HphI GGTGA 3 cut(s) 425, 497, 537
Hpy166II GTNNAC 3 cut(s) 41, 127, 868
Hpy188I TCNGA 3 cut(s) 153, 451, 503
Hpy188III TCNNGA 3 cut(s) 534, 599, 722
Hpy8I GTNNAC 3 cut(s) 41, 127, 868
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4V TGCA 7 cut(s) 259, 266, 290, 388, 516, 802, 845
HpyF10VI GCNNNNNNNGC 4 cut(s) 223, 287, 296, 782
HpyF3I CTNAG 2 cut(s) 374, 662
Hsp92II CATG 2 cut(s) 263, 743
HspAI GCGC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 533
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 8 cut(s) 10, 141, 273, 347, 489, 498, 595, 718
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 2 cut(s) 222, 782
Lsp1109I GCAGC 2 cut(s) 4, 565
LweI GCATC 3 cut(s) 277, 763, 817
MabI ACCWGGT 1 cut(s) 870
MaeI CTAG 4 cut(s) 302, 345, 393, 914
MaeIII GTNAC 2 cut(s) 543, 742
MalI GATC 8 cut(s) 12, 143, 275, 349, 491, 500, 597, 720
MboI GATC 8 cut(s) 10, 141, 273, 347, 489, 498, 595, 718
MboII GAAGA 4 cut(s) 212, 224, 250, 533
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 2 cut(s) 273, 347
MhlI GDGCHC 3 cut(s) 219, 301, 717
MluCI AATT 8 cut(s) 75, 417, 577, 591, 635, 654, 666, 838
MnlI CCTC 5 cut(s) 57, 361, 614, 624, 817
MroI TCCGGA 1 cut(s) 533
MroXI GAANNNNTTC 3 cut(s) 107, 312, 702
MseI TTAA 9 cut(s) 243, 330, 399, 407, 468, 657, 855, 900, 926
MslI CAYNNNNRTG 1 cut(s) 153
MspI CCGG 1 cut(s) 534
MspR9I CCNGG 3 cut(s) 618, 628, 872
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 3 cut(s) 618, 628, 872
MwoI GCNNNNNNNGC 4 cut(s) 223, 287, 296, 782
NdeI CATATG 2 cut(s) 283, 611
NdeII GATC 8 cut(s) 10, 141, 273, 347, 489, 498, 595, 718
NlaIII CATG 2 cut(s) 263, 743
NlaIV GGNNCC 2 cut(s) 625, 699
NmuCI GTSAC 2 cut(s) 543, 742
NsbI TGCGCA 1 cut(s) 5
NspI RCATGY 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 207
PdmI GAANNNNTTC 3 cut(s) 107, 312, 702
PfeI GAWTC 4 cut(s) 33, 442, 606, 684
PfoI TCCNGGA 1 cut(s) 626
PkrI GCNGC 2 cut(s) 19, 555
PsiI TTATAA 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 3 cut(s) 616, 626, 870
PspEI GGTNACC 1 cut(s) 543
PspFI CCCAGC 1 cut(s) 549
PspGI CCWGG 3 cut(s) 616, 626, 870
PspN4I GGNNCC 2 cut(s) 625, 699
PstI CTGCAG 1 cut(s) 847
PsuI RGATCY 2 cut(s) 273, 347
RsaI GTAC 3 cut(s) 40, 806, 888
RsaNI GTAC 3 cut(s) 39, 805, 887
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 9 cut(s) 243, 330, 399, 407, 468, 657, 855, 900, 926
SatI GCNGC 2 cut(s) 18, 554
Sau3AI GATC 8 cut(s) 10, 141, 273, 347, 489, 498, 595, 718
ScrFI CCNGG 3 cut(s) 618, 628, 872
SduI GDGCHC 3 cut(s) 219, 301, 717
SexAI ACCWGGT 1 cut(s) 870
SfaNI GCATC 3 cut(s) 277, 763, 817
SfcI CTRYAG 2 cut(s) 756, 843
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
Sse9I AATT 8 cut(s) 75, 417, 577, 591, 635, 654, 666, 838
SspI AATATT 1 cut(s) 178
SspMI CTAG 4 cut(s) 302, 345, 393, 914
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 616, 626, 870
TaaI ACNGT 1 cut(s) 367
TaqI TCGA 1 cut(s) 711
TasI AATT 8 cut(s) 75, 417, 577, 591, 635, 654, 666, 838
TatI WGTACW 1 cut(s) 38
TfiI GAWTC 4 cut(s) 33, 442, 606, 684
Tru1I TTAA 9 cut(s) 243, 330, 399, 407, 468, 657, 855, 900, 926
Tru9I TTAA 9 cut(s) 243, 330, 399, 407, 468, 657, 855, 900, 926
TscAI CASTG 3 cut(s) 13, 751, 838
TseFI GTSAC 2 cut(s) 543, 742
TseI GCWGC 2 cut(s) 17, 553
Tsp45I GTSAC 2 cut(s) 543, 742
TspDTI ATGAA 5 cut(s) 100, 150, 213, 554, 810
TspRI CASTG 3 cut(s) 13, 751, 838
XapI RAATTY 3 cut(s) 417, 577, 838
XceI RCATGY 1 cut(s) 263
XmnI GAANNNNTTC 3 cut(s) 107, 312, 702
XspI CTAG 4 cut(s) 302, 345, 393, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.