FvH4_1g18411
MYB Family

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000261
Physical Location & Seq
Reverse (-)
10722550 .. 10723516
967 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18411.t1

Sequence Viewer

Length: 858 bp
ATGGAAGTTGGTGATGAAAATTCTGAACAAGGGAAGCAAAGGCGTATATGGAGCAGTTTTGAGGAAGAATCTTTGTTGAATATACTTGATAGTATTGTTGCTGGTGGACAACACTGCGATACTGGAAGTTTCAAATCTGGTACGTTAACAAAAATAGAGCATGCTTTGAATGATACATGTCCTAATTCCAATTTGAAGGCAAGTCTACATATTGAGTCAAAGTTGAAGAAACTCAAAAAGGATTATAGCATCATCTATGACATGATAAACAAGAGTGGATTTGCATGGAATGACGTTAAAAAGTGTGTGGAAGTTGATAGTAATGAAGTATGGGACATGTATGTGCAGAACAACAAAAAGGCAAAAGGCTGGAGAAACAAATCTTATCCCATGTTTGAGAGGCTAGCTAACATCTTTGGGAATGACCGTGCTAACGGAATTGCAGCTGAGGCTCCTACTGATATGGTGAAGGAGCAGAGCAACAATGAAGATGAGGTTGATCTTGAGAATGACATAAGTCCCATGTCAGTAGAAGGCAGCCGAACCTCTCAGGTCAGTCAAAAAAAGAGGAAAAGAAATGATGAAGATAGAATCATTCTTGCATTGAATAGGATGTTTGAAGAATCTGGAAAAAGAATGCAAATGATGACTGATGCCATAGTGAAAGGAAATGAAGACCGGTCTGAAATTGCTAAGGAACTCAAGAATATGGGACTTTCTCCTCTAGACCAAATTGAGGTAATGAAAATGATTTTGGAAAAACCCCAAAATATCTCTTTGTTCATGTCCTTGGATGATGATGTGAAGAAAGTGTATGTGGAAAATCTACTTGGTGGTAGTGCTAGGGGATCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

286

Amino Acids

32.3

Weight (kDa)

5.29

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 17 - 114 2e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 205
AclWI GGATC 1 cut(s) 856
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 736
AflIII ACRYGT 2 cut(s) 176, 336
AgeI ACCGGT 1 cut(s) 678
AgsI TTSAA 7 cut(s) 79, 133, 169, 196, 226, 607, 620
AjuI GAANNNNNNNTTGG 4 cut(s) 737, 769, 813, 845
AluBI AGCT 2 cut(s) 407, 446
AluI AGCT 2 cut(s) 407, 446
AlwI GGATC 1 cut(s) 856
ApeKI GCWGC 2 cut(s) 443, 537
ApoI RAATTY 1 cut(s) 19
AsiGI ACCGGT 1 cut(s) 678
AsuHPI GGTGA 2 cut(s) 23, 478
AsuNHI GCTAGC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 681
BbvCI CCTCAGC 1 cut(s) 447
BbvI GCAGC 2 cut(s) 455, 549
BfaI CTAG 4 cut(s) 404, 725, 843, 856
BisI GCNGC 2 cut(s) 444, 538
BlsI GCNGC 2 cut(s) 445, 539
BmiI GGNNCC 1 cut(s) 453
BmsI GCATC 2 cut(s) 258, 643
BmtI GCTAGC 1 cut(s) 407
BoxI GACNNNNGTC 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 391
Bpu10I CCTNAGC 2 cut(s) 447, 693
BpuEI CTTGAG 2 cut(s) 524, 686
BsaJI CCNNGG 1 cut(s) 789
BsaWI WCCGGW 1 cut(s) 678
Bsc4I CCNNNNNNNGG 1 cut(s) 736
Bse118I RCCGGY 1 cut(s) 678
Bse1I ACTGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 789
BseGI GGATG 2 cut(s) 618, 799
BseLI CCNNNNNNNGG 1 cut(s) 736
BseMII CTCAG 2 cut(s) 438, 563
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 711
BseXI GCAGC 2 cut(s) 455, 549
BsgI GTGCAG 1 cut(s) 365
BshTI ACCGGT 1 cut(s) 678
BsiSI CCGG 1 cut(s) 679
BslFI GGGAC 3 cut(s) 347, 504, 726
BslI CCNNNNNNNGG 1 cut(s) 736
BsmFI GGGAC 3 cut(s) 347, 504, 726
BsmI GAATGC 1 cut(s) 642
Bsp143I GATC 2 cut(s) 499, 848
BspCNI CTCAG 2 cut(s) 439, 562
BspLI GGNNCC 1 cut(s) 453
BspOI GCTAGC 1 cut(s) 407
BspPI GGATC 1 cut(s) 856
BsrFI RCCGGY 1 cut(s) 678
BsrI ACTGG 1 cut(s) 127
BssAI RCCGGY 1 cut(s) 678
BssECI CCNNGG 1 cut(s) 789
BssMI GATC 2 cut(s) 499, 848
BssT1I CCWWGG 1 cut(s) 789
Bst4CI ACNGT 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 162, 405
BstDEI CTNAG 3 cut(s) 447, 549, 693
BstF5I GGATG 2 cut(s) 618, 799
BstKTI GATC 2 cut(s) 502, 851
BstMBI GATC 2 cut(s) 499, 848
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNSI RCATGY 3 cut(s) 164, 180, 340
BstPAI GACNNNNGTC 1 cut(s) 516
BstV1I GCAGC 2 cut(s) 455, 549
BstV2I GAAGAC 1 cut(s) 681
BstX2I RGATCY 1 cut(s) 848
BstYI RGATCY 1 cut(s) 848
BtsCI GGATG 2 cut(s) 618, 799
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 162, 405
Cfr10I RCCGGY 1 cut(s) 678
Csp6I GTAC 1 cut(s) 141
CspAI ACCGGT 1 cut(s) 678
CviAII CATG 8 cut(s) 161, 177, 262, 285, 337, 391, 523, 784
CviJI RGCY 6 cut(s) 369, 403, 407, 446, 452, 540
CviKI_1 RGCY 6 cut(s) 369, 403, 407, 446, 452, 540
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 3 cut(s) 447, 549, 693
DpnI GATC 2 cut(s) 501, 850
DpnII GATC 2 cut(s) 499, 848
Eco130I CCWWGG 1 cut(s) 789
EcoT14I CCWWGG 1 cut(s) 789
ErhI CCWWGG 1 cut(s) 789
FaeI CATG 8 cut(s) 164, 180, 265, 288, 340, 394, 526, 787
FaqI GGGAC 3 cut(s) 347, 504, 726
FatI CATG 8 cut(s) 160, 176, 261, 284, 336, 390, 522, 783
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 444, 538
FokI GGATG 2 cut(s) 625, 806
Fsp4HI GCNGC 2 cut(s) 444, 538
FspBI CTAG 4 cut(s) 404, 725, 843, 856
GluI GCNGC 2 cut(s) 444, 538
GsuI CTGGAG 1 cut(s) 391
HapII CCGG 1 cut(s) 679
Hin1II CATG 8 cut(s) 164, 180, 265, 288, 340, 394, 526, 787
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 4 cut(s) 68, 215, 591, 623
HpaI GTTAAC 1 cut(s) 147
HpaII CCGG 1 cut(s) 679
HphI GGTGA 2 cut(s) 23, 478
Hpy166II GTNNAC 3 cut(s) 107, 147, 206
Hpy188I TCNGA 2 cut(s) 25, 685
Hpy188III TCNNGA 4 cut(s) 503, 627, 703, 725
Hpy8I GTNNAC 3 cut(s) 107, 147, 206
HpyAV CCTTC 3 cut(s) 190, 463, 527
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 2 cut(s) 143, 294
HpyCH4V TGCA 5 cut(s) 284, 346, 443, 602, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 3 cut(s) 447, 549, 693
HpySE526I ACGT 2 cut(s) 143, 294
Hsp92II CATG 8 cut(s) 164, 180, 265, 288, 340, 394, 526, 787
KspAI GTTAAC 1 cut(s) 147
Kzo9I GATC 2 cut(s) 499, 848
LmnI GCTCC 3 cut(s) 51, 457, 472
LpnPI CCDG 7 cut(s) 87, 108, 123, 355, 536, 612, 692
Lsp1109I GCAGC 2 cut(s) 455, 549
LweI GCATC 2 cut(s) 258, 643
MaeI CTAG 4 cut(s) 404, 725, 843, 856
MaeII ACGT 2 cut(s) 143, 294
MalI GATC 2 cut(s) 501, 850
MboI GATC 2 cut(s) 499, 848
MboII GAAGA 7 cut(s) 77, 238, 500, 596, 632, 686, 817
MflI RGATCY 1 cut(s) 848
MluCI AATT 6 cut(s) 19, 184, 190, 438, 687, 732
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 8 cut(s) 55, 393, 442, 487, 556, 561, 730, 732
MseI TTAA 2 cut(s) 146, 297
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 446
MspI CCGG 1 cut(s) 679
Mva1269I GAATGC 1 cut(s) 642
MwoI GCNNNNNNNGC 1 cut(s) 449
NdeII GATC 2 cut(s) 499, 848
NheI GCTAGC 1 cut(s) 403
NlaIII CATG 8 cut(s) 164, 180, 265, 288, 340, 394, 526, 787
NlaIV GGNNCC 1 cut(s) 453
NspI RCATGY 3 cut(s) 164, 180, 340
PaeI GCATGC 1 cut(s) 164
PciI ACATGT 2 cut(s) 176, 336
PctI GAATGC 1 cut(s) 642
PfeI GAWTC 3 cut(s) 68, 591, 623
PinAI ACCGGT 1 cut(s) 678
PkrI GCNGC 2 cut(s) 445, 539
PleI GAGTC 1 cut(s) 223
PpsI GAGTC 1 cut(s) 223
PscI ACATGT 2 cut(s) 176, 336
PshAI GACNNNNGTC 1 cut(s) 516
PspN4I GGNNCC 1 cut(s) 453
PsuI RGATCY 1 cut(s) 848
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 2 cut(s) 146, 297
SatI GCNGC 2 cut(s) 444, 538
Sau3AI GATC 2 cut(s) 499, 848
SchI GAGTC 1 cut(s) 224
SetI ASST 8 cut(s) 146, 297, 409, 448, 498, 548, 555, 741
SfaNI GCATC 2 cut(s) 258, 643
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 503, 701
SmoI CTYRAG 2 cut(s) 503, 701
SphI GCATGC 1 cut(s) 164
Sse9I AATT 6 cut(s) 19, 184, 190, 438, 687, 732
SspMI CTAG 4 cut(s) 404, 725, 843, 856
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 2 cut(s) 146, 297
TasI AATT 6 cut(s) 19, 184, 190, 438, 687, 732
TfiI GAWTC 3 cut(s) 68, 591, 623
Tru1I TTAA 2 cut(s) 146, 297
Tru9I TTAA 2 cut(s) 146, 297
TscAI CASTG 1 cut(s) 119
TseI GCWGC 2 cut(s) 443, 537
TspDTI ATGAA 7 cut(s) 30, 339, 501, 597, 687, 758, 772
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 1 cut(s) 119
XapI RAATTY 1 cut(s) 19
XbaI TCTAGA 1 cut(s) 724
XceI RCATGY 3 cut(s) 164, 180, 340
XmiI GTMKAC 1 cut(s) 205
XspI CTAG 4 cut(s) 404, 725, 843, 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.