pycom13g29080
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000261
Physical Location & Seq
Forward (+)
25443856 .. 25444277
422 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g29080.1

Sequence Viewer

Length: 378 bp
ATGGTTGAATCAACAACAGATGCAATCGAAAACATGGGATTGGAAAATGAGGATTGCGATAAGACCTCCGAGATTGCATCTCAACCTATTAGGAAGAGGAAAATGAATAAGAATGATGCTGATGCAAATATTGTAGTTGTTATCCGTGAAGGTTGGGATAAAGCAATTACTGAAATGAATAATTTAGGTGAAAGTTTTACTTTCGGAGAAGCGAAAGCCAGGTTACCTTCTGAGTTTCAGGCCATTGGTCTCCTATATGATCAGCTCCTAAAAATTTCAATGAAGTTAGTAAAAGTTACTGATCTGATGTGTATTTGGTGTACCTTGGATGACTCACACAAGGAAGATTTCATTAAGATGTTTATGGATGGCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

126

Amino Acids

14.2

Weight (kDa)

4.62

Isoelectric Point (pI)

47.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 1 cut(s) 322
AgsI TTSAA 2 cut(s) 8, 279
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 254
AoxI GGCC 2 cut(s) 240, 370
ApoI RAATTY 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 200
BccI CCATC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 220
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 254
Bme1390I CCNGG 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 4 cut(s) 10, 86, 106, 112
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 2 cut(s) 334, 373
BseMII CTCAG 1 cut(s) 222
BshFI GGCC 2 cut(s) 242, 372
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 2 cut(s) 242, 372
Bso31I GGTCTC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 259, 301
BspANI GGCC 2 cut(s) 242, 372
BspCNI CTCAG 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 2 cut(s) 259, 301
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 231
BstEII GGTNACC 1 cut(s) 222
BstF5I GGATG 2 cut(s) 334, 373
BstKTI GATC 2 cut(s) 262, 304
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 2 cut(s) 259, 301
BstNI CCWGG 1 cut(s) 220
BstPI GGTNACC 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 218
BsuRI GGCC 2 cut(s) 242, 372
BtsCI GGATG 2 cut(s) 334, 373
Csp6I GTAC 1 cut(s) 321
CviAII CATG 1 cut(s) 34
CviJI RGCY 4 cut(s) 218, 242, 265, 372
CviKI_1 RGCY 4 cut(s) 218, 242, 265, 372
CviQI GTAC 1 cut(s) 321
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 261, 303
DpnII GATC 2 cut(s) 259, 301
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 222
EcoO65I GGTNACC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 37
FaiI YATR 4 cut(s) 35, 256, 258, 365
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FatI CATG 1 cut(s) 33
FbaI TGATCA 1 cut(s) 259
FokI GGATG 1 cut(s) 341
HaeIII GGCC 2 cut(s) 242, 372
Hin1II CATG 1 cut(s) 37
HinfI GANTC 2 cut(s) 8, 332
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 5 cut(s) 70, 206, 232, 306, 377
Hpy8I GTNNAC 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 143, 237
HpyCH4V TGCA 3 cut(s) 23, 77, 125
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 259, 301
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 3 cut(s) 205, 224, 232
LweI GCATC 4 cut(s) 10, 86, 106, 112
MaeIII GTNAC 2 cut(s) 222, 295
MalI GATC 2 cut(s) 261, 303
MboI GATC 2 cut(s) 259, 301
MboII GAAGA 2 cut(s) 106, 356
MluCI AATT 3 cut(s) 165, 181, 273
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 3 cut(s) 43, 76, 90
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 220
NdeII GATC 2 cut(s) 259, 301
NlaIII CATG 1 cut(s) 37
PfeI GAWTC 1 cut(s) 8
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 218
PspEI GGTNACC 1 cut(s) 222
PspGI CCWGG 1 cut(s) 218
RsaI GTAC 1 cut(s) 322
RsaNI GTAC 1 cut(s) 321
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 1 cut(s) 354
Sau3AI GATC 2 cut(s) 259, 301
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 220
SetI ASST 8 cut(s) 68, 88, 154, 190, 224, 229, 267, 326
SfaNI GCATC 4 cut(s) 10, 86, 106, 112
SgeI CNNG 8 cut(s) 46, 82, 158, 231, 232, 251, 337, 352
SmiMI CAYNNNNRTG 1 cut(s) 356
Sse9I AATT 3 cut(s) 165, 181, 273
SspI AATATT 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 324
TaqI TCGA 1 cut(s) 27
TasI AATT 3 cut(s) 165, 181, 273
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TspDTI ATGAA 4 cut(s) 119, 191, 296, 340
TspGWI ACGGA 1 cut(s) 134
XapI RAATTY 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.