pycom08g08760
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
7068410 .. 7069225
816 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08760.2

Sequence Viewer

Length: 738 bp
ATGGCTTCTTTGATAGATTATATGGCCACCTCACGTTATTGGATTGATCATGAGAAAGATGTACAACTTACCATCCTTAAGGAGATGGTTGATGATGGTGTTAGGTGTGAGACCGGCAGTTTTAAGGCTAGTACTTTTGTAATGGTTGCCTCCAAGATGAGGGAACAGATTCTTGACATTGATATAGAGCCGAAGCATATACAATATAAATTGAAGTATCTGAAAGAAAAGTATTCATCTGCATATGACATGATGAATACATCTGGATTTGGTTGGGATGATGAGAAAAAATGTTTTGTTGTGAATAGTTACGAAACACTACACGAGTGGGTAAAGAAACATCCCAATGCATCTTGCAAACCAAATAAGTTATTCCCATTGTATCCATGGCTATGTACGATGTTTGGGAGAGACCGAGCCACGGGTAGTCTGGCTGAATCAGCAGCAAATGTAATCAAAATTATAGGTTTGGAAAGTGAAACTTGTGAGACTTCCGAGATGCCTCCTTCACCTACCCCATCTCCTTATGTTGCTACATCTAGTGCATCTCAACTTGTTAGAAAGAGGAAAATGAGTAGGAATGATGGTGATGCAAATATTGTATCTGTTATCAGTGAAGGTTGGAATAAAGCTGTTGCTGGAATGAAGAAATTAGGTGAAAGTTTTACTTTCAGAGAAGTGAAAGCTAGACTACCCTCTGAGCTTCAGGCCATGGGTCTCCCATACGATCGGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

246

Amino Acids

27.76

Weight (kDa)

7.57

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 689
AfaI GTAC 3 cut(s) 63, 133, 397
AfiI CCNNNNNNNGG 2 cut(s) 159, 421
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 3 cut(s) 632, 686, 703
AluI AGCT 3 cut(s) 632, 686, 703
Alw26I GTCTC 4 cut(s) 104, 405, 482, 722
AoxI GGCC 2 cut(s) 24, 708
ApeKI GCWGC 1 cut(s) 443
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 501, 599, 668
BalI TGGCCA 1 cut(s) 26
BauI CACGAG 1 cut(s) 323
BbvI GCAGC 1 cut(s) 455
BccI CCATC 5 cut(s) 79, 80, 89, 526, 578
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 4 cut(s) 104, 405, 482, 722
BfaI CTAG 3 cut(s) 129, 540, 687
BfrI CTTAAG 1 cut(s) 77
BfuI GTATCC 1 cut(s) 393
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
BmcAI AGTACT 1 cut(s) 133
BmsI GCATC 4 cut(s) 359, 489, 554, 580
BsaI GGTCTC 3 cut(s) 104, 405, 722
BsaJI CCNNGG 3 cut(s) 386, 420, 711
BsaXI ACNNNNNCTCC 2 cut(s) 505, 535
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 421
Bse118I RCCGGY 1 cut(s) 113
BseDI CCNNGG 3 cut(s) 386, 420, 711
BseGI GGATG 3 cut(s) 72, 283, 340
BseLI CCNNNNNNNGG 2 cut(s) 159, 421
BseMII CTCAG 1 cut(s) 690
BseXI GCAGC 1 cut(s) 455
Bsh1285I CGRYCG 1 cut(s) 730
BshFI GGCC 2 cut(s) 26, 710
BsiEI CGRYCG 1 cut(s) 730
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 159, 421
BsmAI GTCTC 4 cut(s) 104, 405, 482, 722
BsnI GGCC 2 cut(s) 26, 710
Bso31I GGTCTC 3 cut(s) 104, 405, 722
Bsp1407I TGTACA 1 cut(s) 61
Bsp143I GATC 2 cut(s) 46, 727
Bsp19I CCATGG 2 cut(s) 386, 711
BspANI GGCC 2 cut(s) 26, 710
BspCNI CTCAG 1 cut(s) 691
BspHI TCATGA 1 cut(s) 49
BspTI CTTAAG 1 cut(s) 77
BspTNI GGTCTC 3 cut(s) 104, 405, 722
BsrFI RCCGGY 1 cut(s) 113
BsrGI TGTACA 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 3 cut(s) 386, 420, 711
BssMI GATC 2 cut(s) 46, 727
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 2 cut(s) 386, 711
Bst2BI CACGAG 1 cut(s) 323
BstAFI CTTAAG 1 cut(s) 77
BstAUI TGTACA 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 699
BstDSI CCRYGG 3 cut(s) 386, 420, 711
BstF5I GGATG 3 cut(s) 72, 283, 340
BstKTI GATC 2 cut(s) 49, 730
BstMAI GTCTC 4 cut(s) 104, 405, 482, 722
BstMBI GATC 2 cut(s) 46, 727
BstMCI CGRYCG 1 cut(s) 730
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 455
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 2 cut(s) 26, 710
BtgI CCRYGG 3 cut(s) 386, 420, 711
BtsCI GGATG 3 cut(s) 72, 283, 340
BtsIMutI CAGTG 1 cut(s) 619
CciI TCATGA 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 113
Csp6I GTAC 3 cut(s) 62, 132, 396
CviAII CATG 4 cut(s) 50, 250, 387, 712
CviQI GTAC 3 cut(s) 62, 132, 396
DdeI CTNAG 1 cut(s) 699
DpnI GATC 2 cut(s) 48, 729
DpnII GATC 2 cut(s) 46, 727
EaeI YGGCCR 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 386, 711
Eco31I GGTCTC 3 cut(s) 104, 405, 722
Eco57I CTGAAG 1 cut(s) 689
EcoT14I CCWWGG 2 cut(s) 386, 711
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 2 cut(s) 386, 711
FaeI CATG 4 cut(s) 53, 253, 390, 715
FalI AAGNNNNNCTT 4 cut(s) 466, 498, 652, 684
FatI CATG 4 cut(s) 49, 249, 386, 711
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 3 cut(s) 59, 290, 327
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 3 cut(s) 129, 540, 687
GluI GCNGC 1 cut(s) 444
HaeIII GGCC 2 cut(s) 26, 710
HapII CCGG 1 cut(s) 114
Hin1II CATG 4 cut(s) 53, 253, 390, 715
HinfI GANTC 2 cut(s) 169, 437
HpaII CCGG 1 cut(s) 114
HphI GGTGA 3 cut(s) 501, 599, 668
Hpy188I TCNGA 4 cut(s) 222, 496, 674, 700
Hpy188III TCNNGA 3 cut(s) 50, 173, 264
HpyAV CCTTC 2 cut(s) 516, 611
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 5 cut(s) 242, 350, 357, 545, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 1 cut(s) 699
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 4 cut(s) 53, 253, 390, 715
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 2 cut(s) 46, 727
LpnPI CCDG 5 cut(s) 127, 249, 416, 624, 692
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 4 cut(s) 359, 489, 554, 580
MaeI CTAG 3 cut(s) 129, 540, 687
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 308
MalI GATC 2 cut(s) 48, 729
MboI GATC 2 cut(s) 46, 727
MboII GAAGA 1 cut(s) 658
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 3 cut(s) 209, 459, 650
MluNI TGGCCA 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 602
MnlI CCTC 6 cut(s) 40, 153, 160, 513, 558, 706
Mox20I TGGCCA 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 168
MscI TGGCCA 1 cut(s) 26
MseI TTAA 2 cut(s) 78, 123
MslI CAYNNNNRTG 2 cut(s) 345, 391
Msp20I TGGCCA 1 cut(s) 26
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 440
NcoI CCATGG 2 cut(s) 386, 711
NdeI CATATG 1 cut(s) 244
NdeII GATC 2 cut(s) 46, 727
NlaIII CATG 4 cut(s) 53, 253, 390, 715
NsiI ATGCAT 1 cut(s) 352
PagI TCATGA 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 169, 437
PkrI GCNGC 1 cut(s) 445
Ple19I CGATCG 1 cut(s) 730
PvuI CGATCG 1 cut(s) 730
RsaI GTAC 3 cut(s) 63, 133, 397
RsaNI GTAC 3 cut(s) 62, 132, 396
RseI CAYNNNNRTG 2 cut(s) 345, 391
SaqAI TTAA 2 cut(s) 78, 123
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 2 cut(s) 46, 727
ScaI AGTACT 1 cut(s) 133
SfaNI GCATC 4 cut(s) 359, 489, 554, 580
SmiMI CAYNNNNRTG 2 cut(s) 345, 391
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 3 cut(s) 209, 459, 650
SspI AATATT 1 cut(s) 598
SspMI CTAG 3 cut(s) 129, 540, 687
StyI CCWWGG 2 cut(s) 386, 711
TaiI ACGT 1 cut(s) 37
TaqII GACCGA 1 cut(s) 429
TasI AATT 3 cut(s) 209, 459, 650
TatI WGTACW 2 cut(s) 61, 131
TfiI GAWTC 2 cut(s) 169, 437
Tru1I TTAA 2 cut(s) 78, 123
Tru9I TTAA 2 cut(s) 78, 123
TscAI CASTG 1 cut(s) 619
TseI GCWGC 1 cut(s) 443
TspDTI ATGAA 3 cut(s) 225, 269, 659
TspRI CASTG 1 cut(s) 619
Vha464I CTTAAG 1 cut(s) 77
XcmI CCANNNNNNNNNTGG 2 cut(s) 384, 427
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 3 cut(s) 129, 540, 687
ZrmI AGTACT 1 cut(s) 133
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.