pycom01g07070
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000261
Physical Location & Seq
Forward (+)
7652921 .. 7653862
942 bp
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UTR
Exon/CDS
Intron
pycom01g07070.1

Sequence Viewer

Length: 708 bp
ATGGCTCAGTTTGAAACAGCTATTAATTTGAAATGTCCTAATGCCAATATAAAGGCAATTCCACATATTGAGTCCAAAATGAGGAGGTGGAAAAAAGATTATGCAATAGTTTATGACATGGTTAATAAAACTGGTTTTGCATGGAATGATGTACGAAAGTGTATTGAGGTTGATAGCACTGAAGTATGGCAATCCTATGTAAAGGTTAACAAAGAAGCAGAAGGCTGGCTAGGAAAATCGTTTCCATTGTATGACAGATTGAATGTTATTTTTGGGAAAGACCGAGCAACTGGAGTAGGAGTTGCAACTCCTATTGAGATGATGAATGAGCCTGAGCACATTAATGAAGATGAAGATGAGGCGGAGACTAGTTCTCCCTATGTTGCTCGACGGTCCAGTAGTTCAAGTACCCGGAAAAGGAAGAGAGCTACTAATGATAATGATCTTGCTGTGGCATTTAAAGAAATGCTTTCTGAATCAGTTGATAAGTTGGGTGAAGTTTTACAAGTTGCTTTTGGGAAAGGAGTGGATCCAAAACCTAAGATTGTTTCAGAATTGTCAAAGATGGATTTGTCTATTGAGGATCAAATCAAGGCACTAAATATCCTTTTTGAAAAGCCACAGAATGAGAGGACATTCTCGTCTTTGGATGGTGCAATGAAAAAAGCCTTTGTACTCATGTTACTTGGACAAAGTAACCTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

236

Amino Acids

26.54

Weight (kDa)

6.23

Isoelectric Point (pI)

58.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 640
AciI CCGC 1 cut(s) 362
AclWI GGATC 3 cut(s) 524, 537, 591
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 3 cut(s) 153, 409, 675
AfiI CCNNNNNNNGG 2 cut(s) 81, 417
AgsI TTSAA 5 cut(s) 14, 31, 262, 405, 614
AhlI ACTAGT 1 cut(s) 368
AluBI AGCT 2 cut(s) 20, 428
AluI AGCT 2 cut(s) 20, 428
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 3 cut(s) 524, 537, 591
AseI ATTAAT 2 cut(s) 24, 342
AspS9I GGNCC 1 cut(s) 393
AsuC2I CCSGG 1 cut(s) 412
AsuHPI GGTGA 1 cut(s) 506
AvaII GGWCC 1 cut(s) 393
BamHI GGATCC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 339
BccI CCATC 2 cut(s) 559, 644
BcnI CCSGG 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 359
BcuI ACTAGT 1 cut(s) 368
BfaI CTAG 2 cut(s) 230, 369
Bme1390I CCNGG 1 cut(s) 412
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 1 cut(s) 412
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 412
BsaBI GATNNNNATC 1 cut(s) 441
BsaXI ACNNNNNCTCC 4 cut(s) 285, 315, 358, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 417
Bse1I ACTGG 3 cut(s) 136, 295, 396
Bse3DI GCAATG 1 cut(s) 663
Bse8I GATNNNNATC 1 cut(s) 441
BseGI GGATG 1 cut(s) 655
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 81, 417
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 2 cut(s) 20, 324
BseNI ACTGG 3 cut(s) 136, 295, 396
BseRI GAGGAG 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 412
BslI CCNNNNNNNGG 2 cut(s) 81, 417
BsmAI GTCTC 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 3 cut(s) 442, 529, 583
BspACI CCGC 1 cut(s) 362
BspCNI CTCAG 2 cut(s) 19, 325
BspLI GGNNCC 1 cut(s) 531
BspPI GGATC 3 cut(s) 524, 537, 591
BsrDI GCAATG 1 cut(s) 663
BsrI ACTGG 3 cut(s) 136, 295, 396
BssMI GATC 3 cut(s) 442, 529, 583
Bst4CI ACNGT 1 cut(s) 393
Bst6I CTCTTC 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 6, 333, 540
BstF5I GGATG 1 cut(s) 655
BstKTI GATC 3 cut(s) 445, 532, 586
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 442, 529, 583
BstSCI CCNGG 1 cut(s) 410
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BtsCI GGATG 1 cut(s) 655
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 393
Csp6I GTAC 3 cut(s) 152, 408, 674
CviAII CATG 3 cut(s) 118, 141, 679
CviJI RGCY 8 cut(s) 5, 20, 225, 229, 331, 428, 619, 668
CviKI_1 RGCY 8 cut(s) 5, 20, 225, 229, 331, 428, 619, 668
CviQI GTAC 3 cut(s) 152, 408, 674
DdeI CTNAG 3 cut(s) 6, 333, 540
DpnI GATC 3 cut(s) 444, 531, 585
DpnII GATC 3 cut(s) 442, 529, 583
DraI TTTAAA 1 cut(s) 460
DrdI GACNNNNNNGTC 1 cut(s) 640
DseDI GACNNNNNNGTC 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
EciI GGCGGA 1 cut(s) 377
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 201
FaeI CATG 3 cut(s) 121, 144, 682
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FatI CATG 3 cut(s) 117, 140, 678
FokI GGATG 1 cut(s) 662
FspBI CTAG 2 cut(s) 230, 369
GsuI CTGGAG 1 cut(s) 312
HapII CCGG 1 cut(s) 412
Hin1II CATG 3 cut(s) 121, 144, 682
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 2 cut(s) 71, 476
HpaI GTTAAC 1 cut(s) 208
HpaII CCGG 1 cut(s) 412
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 475, 553
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 393
HpyCH4V TGCA 4 cut(s) 104, 140, 305, 656
HpyF3I CTNAG 3 cut(s) 6, 333, 540
Hsp92II CATG 3 cut(s) 121, 144, 682
KspAI GTTAAC 1 cut(s) 208
Kzo9I GATC 3 cut(s) 442, 529, 583
LpnPI CCDG 6 cut(s) 117, 211, 276, 345, 409, 425
MaeI CTAG 2 cut(s) 230, 369
MaeIII GTNAC 2 cut(s) 681, 695
MalI GATC 3 cut(s) 444, 531, 585
MboI GATC 3 cut(s) 442, 529, 583
MboII GAAGA 3 cut(s) 359, 365, 433
MfeI CAATTG 1 cut(s) 703
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 4 cut(s) 25, 57, 554, 703
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 6 cut(s) 75, 78, 160, 352, 574, 624
MseI TTAA 5 cut(s) 24, 123, 207, 342, 459
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 1 cut(s) 412
MspR9I CCNGG 1 cut(s) 412
MunI CAATTG 1 cut(s) 703
NciI CCSGG 1 cut(s) 412
NdeII GATC 3 cut(s) 442, 529, 583
NlaIII CATG 3 cut(s) 121, 144, 682
NlaIV GGNNCC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 476
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PshBI ATTAAT 2 cut(s) 24, 342
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 1 cut(s) 393
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 3 cut(s) 153, 409, 675
RsaNI GTAC 3 cut(s) 152, 408, 674
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 5 cut(s) 24, 123, 207, 342, 459
Sau3AI GATC 3 cut(s) 442, 529, 583
Sau96I GGNCC 1 cut(s) 393
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 412
SduI GDGCHC 1 cut(s) 339
SetI ASST 7 cut(s) 22, 89, 171, 207, 430, 541, 702
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 342
SpeI ACTAGT 1 cut(s) 368
Sse9I AATT 4 cut(s) 25, 57, 554, 703
SsiI CCGC 1 cut(s) 362
SspMI CTAG 2 cut(s) 230, 369
StyD4I CCNGG 1 cut(s) 410
TaaI ACNGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 388
TaqII GACCGA 1 cut(s) 297
TasI AATT 4 cut(s) 25, 57, 554, 703
TatI WGTACW 1 cut(s) 673
TfiI GAWTC 1 cut(s) 476
Tru1I TTAA 5 cut(s) 24, 123, 207, 342, 459
Tru9I TTAA 5 cut(s) 24, 123, 207, 342, 459
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 4 cut(s) 338, 360, 366, 674
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 393
VspI ATTAAT 2 cut(s) 24, 342
XspI CTAG 2 cut(s) 230, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.