Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Reverse (-)

18372720 .. 18373085

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG200200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGATGCAAACTTCAAAGGAGCAAATGCAAGTACTAATCGAAAATCTGCAGTCGAAAGATAAAAATGAGTCCCTGCAACCAAAAGATGTCAATGAGTCTATATCCAAAGATAAGAATGAATCTCAGCAATCCAAAGGTAACAATGAATCTCTGCCATCAAAAGATAACAGAACAGGTCAGTTACGGTCTGAGCTTAAAAAGTTGGGGCTTTCTATTACTGATCGAGTGAAAGCATTAAGACTACTCATGGCTGATACTTGGAATGCTGATTTTTTTCTTACTTTGGATGAGGAAGAGAAATTGGAATTTGTAAAGCAACTCATTGATGAATCATCTAAGAAGGTGTATATTGTGGGTTATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006338 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0051276 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MRG Tudor-knot

Protein Analysis

121

Amino Acids

13.94

Weight (kDa)

5.29

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	15
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	305
BccI	CCATC	1 cut(s)	163
BfmI	CTRYAG	1 cut(s)	47
BmcAI	AGTACT	1 cut(s)	33
BseGI	GGATG	1 cut(s)	292
BseMII	CTCAG	2 cut(s)	137, 180
BslFI	GGGAC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	268
Bsp143I	GATC	1 cut(s)	220
BspCNI	CTCAG	2 cut(s)	136, 181
BspMAI	CTGCAG	1 cut(s)	51
BssMI	GATC	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	288
BstDEI	CTNAG	3 cut(s)	123, 189, 336
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstSFI	CTRYAG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	3 cut(s)	193, 208, 251
CviKI_1	RGCY	3 cut(s)	193, 208, 251
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	3 cut(s)	123, 189, 336
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
FaeI	CATG	1 cut(s)	250
FaiI	YATR	4 cut(s)	101, 248, 348, 360
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	246
FokI	GGATG	1 cut(s)	299
Hin1II	CATG	1 cut(s)	250
HinfI	GANTC	5 cut(s)	68, 95, 119, 146, 329
Hpy188I	TCNGA	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	4 cut(s)	7, 28, 49, 76
HpyF3I	CTNAG	3 cut(s)	123, 189, 336
Hsp92II	CATG	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	2 cut(s)	86, 159
MaeIII	GTNAC	2 cut(s)	137, 180
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	305
MluCI	AATT	2 cut(s)	299, 305
MlyI	GAGTC	2 cut(s)	77, 104
MnlI	CCTC	1 cut(s)	283
MseI	TTAA	2 cut(s)	195, 236
Mva1269I	GAATGC	1 cut(s)	268
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	250
PctI	GAATGC	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	119, 146, 329
PleI	GAGTC	2 cut(s)	76, 103
PpsI	GAGTC	2 cut(s)	76, 103
PstI	CTGCAG	1 cut(s)	51
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	195, 236
Sau3AI	GATC	1 cut(s)	220
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	2 cut(s)	77, 104
SetI	ASST	4 cut(s)	139, 178, 195, 345
SfcI	CTRYAG	1 cut(s)	47
SgeI	CNNG	6 cut(s)	41, 85, 186, 236, 259, 270
Sse9I	AATT	2 cut(s)	299, 305
TaaI	ACNGT	1 cut(s)	186
TaqI	TCGA	3 cut(s)	39, 53, 223
TasI	AATT	2 cut(s)	299, 305
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	3 cut(s)	119, 146, 329
Tru1I	TTAA	2 cut(s)	195, 236
Tru9I	TTAA	2 cut(s)	195, 236
TspDTI	ATGAA	3 cut(s)	132, 159, 342
XapI	RAATTY	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.