Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000261

Physical Location & Seq

Genomic Coordinates Reverse (-)

6478256 .. 6479266

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAAGGTGGTGATGATAATTCAGAACAAGGGAGGCAAAGGCGTAAATGGACCAGTTTTGAAGAAGAATCATTGTTGAATGCCATTGATAGTGTTCTTGCTAGTGAACAACGCTGTGACACAGGAAGTTTCAAATCTGGTACGTTACTGAAAATTGAGCATGCTTTGAATGAGTTATGTCCTAATTCCAATCTCAAGGCCAATCCGCATATTGAGTCAAAACTAAAGAAACTGAAGAAGGATTATAGCATCATCTATGACATGATAAACAAGAGTGGATTTGCATGGAATGACATAAAGAAGTGTGTTGAAGTTGACAGTAATGAAGTATGGGATCAATATGTGCAGAGTAACAAAAAGGCAAAAGGCTGGAGAAACAAATCATATCCCCTGTATGAGAGGCTAGCCAACATCTTCGGAACTGATCGTGCTAATGGAAATGCAGCTGAGGTTCCTGCTGAAATGGTGGACGAGCAGAGCTATAATGAAGATGACTTAGATATTGAGAATGACACAAGTCCTCAGGAAATGGGACTTTCTGTTCTAGATCAAATTGAGGCATTGAAAATCATTTTGGAAAAGCCCCAAAATATCTCTGTGTTCATGTCCTTAGATGATGATGTGAGGAAAGTGTATGTCCAAAATCTTCTTACTGCTGCTACTAGGGGATCTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000012 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0034645 GO:0035510 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0070013 GO:0070988 GO:0071704 GO:0080111 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko03410 ko03420 ko03430 map03030 map03410 map03420 map03430

Pfam Domains

Protein Families

DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N

Protein Analysis

226

Amino Acids

25.51

Weight (kDa)

4.8

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	17 - 114	3.7e-09	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica	MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica	Prupe.6G228600_v2.0.a1
pyrus_communis	pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis	RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata	RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora	Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa	Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha	Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana	Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	206
AclWI	GGATC	2 cut(s)	342, 676
AcuI	CTGAAG	1 cut(s)	254
AfaI	GTAC	1 cut(s)	142
AgsI	TTSAA	6 cut(s)	62, 79, 133, 169, 311, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AloI	GAACNNNNNNTCC	2 cut(s)	525, 557
AluBI	AGCT	2 cut(s)	446, 480
AluI	AGCT	2 cut(s)	446, 480
AlwI	GGATC	2 cut(s)	342, 676
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	443, 656
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	1 cut(s)	23
AsuNHI	GCTAGC	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	455, 643
BfaI	CTAG	5 cut(s)	102, 404, 545, 663, 676
BisI	GCNGC	2 cut(s)	444, 657
BlsI	GCNGC	2 cut(s)	445, 658
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	453
BmsI	GCATC	1 cut(s)	258
BmtI	GCTAGC	1 cut(s)	407
BoxI	GACNNNNGTC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	391
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	54
Bse21I	CCTNAGG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	438, 536
BseNI	ACTGG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	455, 643
BsgI	GTGCAG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	546
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	200
Bsp143I	GATC	4 cut(s)	334, 424, 547, 668
BspACI	CCGC	1 cut(s)	206
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	2 cut(s)	439, 535
BspLI	GGNNCC	1 cut(s)	453
BspOI	GCTAGC	1 cut(s)	407
BspPI	GGATC	2 cut(s)	342, 676
BsrI	ACTGG	1 cut(s)	54
BssMI	GATC	4 cut(s)	334, 424, 547, 668
Bst4CI	ACNGT	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	162, 405
BstDEI	CTNAG	4 cut(s)	447, 496, 522, 610
BstKTI	GATC	4 cut(s)	337, 427, 550, 671
BstMBI	GATC	4 cut(s)	334, 424, 547, 668
BstNSI	RCATGY	1 cut(s)	164
BstPAI	GACNNNNGTC	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	455, 643
BstX2I	RGATCY	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	668
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	200
Cac8I	GCNNGC	2 cut(s)	162, 405
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	4 cut(s)	161, 262, 285, 604
CviJI	RGCY	7 cut(s)	200, 369, 403, 407, 446, 480, 583
CviKI_1	RGCY	7 cut(s)	200, 369, 403, 407, 446, 480, 583
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	4 cut(s)	447, 496, 522, 610
DpnI	GATC	4 cut(s)	336, 426, 549, 670
DpnII	GATC	4 cut(s)	334, 424, 547, 668
Eco47I	GGWCC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	254
Eco81I	CCTNAGG	1 cut(s)	522
FaeI	CATG	4 cut(s)	164, 265, 288, 607
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	4 cut(s)	160, 261, 284, 603
Fnu4HI	GCNGC	2 cut(s)	444, 657
Fsp4HI	GCNGC	2 cut(s)	444, 657
FspBI	CTAG	5 cut(s)	102, 404, 545, 663, 676
GluI	GCNGC	2 cut(s)	444, 657
GsuI	CTGGAG	1 cut(s)	391
HaeIII	GGCC	1 cut(s)	200
Hin1II	CATG	4 cut(s)	164, 265, 288, 607
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	68, 215
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	3 cut(s)	107, 316, 469
Hpy188I	TCNGA	2 cut(s)	25, 419
Hpy188III	TCNNGA	2 cut(s)	524, 545
Hpy8I	GTNNAC	3 cut(s)	107, 316, 469
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	284, 346, 443
HpyF3I	CTNAG	4 cut(s)	447, 496, 522, 610
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	164, 265, 288, 607
Kzo9I	GATC	4 cut(s)	334, 424, 547, 668
LpnPI	CCDG	7 cut(s)	67, 108, 123, 355, 404, 468, 509
Lsp1109I	GCAGC	2 cut(s)	455, 643
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	5 cut(s)	102, 404, 545, 663, 676
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	3 cut(s)	116, 144, 350
MalI	GATC	4 cut(s)	336, 426, 549, 670
MboI	GATC	4 cut(s)	334, 424, 547, 668
MboII	GAAGA	6 cut(s)	74, 77, 247, 406, 500, 638
MflI	RGATCY	1 cut(s)	668
MluCI	AATT	4 cut(s)	19, 153, 184, 552
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	6 cut(s)	27, 393, 442, 531, 550, 618
MspA1I	CMGCKG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	85
NdeII	GATC	4 cut(s)	334, 424, 547, 668
NheI	GCTAGC	1 cut(s)	403
NlaIII	CATG	4 cut(s)	164, 265, 288, 607
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	164
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	445, 658
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PshAI	GACNNNNGTC	1 cut(s)	516
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	668
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SatI	GCNGC	2 cut(s)	444, 657
Sau3AI	GATC	4 cut(s)	334, 424, 547, 668
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	224
SetI	ASST	6 cut(s)	10, 146, 448, 453, 482, 677
SfaNI	GCATC	1 cut(s)	258
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SphI	GCATGC	1 cut(s)	164
Sse9I	AATT	4 cut(s)	19, 153, 184, 552
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	5 cut(s)	102, 404, 545, 663, 676
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	146
TasI	AATT	4 cut(s)	19, 153, 184, 552
TfiI	GAWTC	1 cut(s)	68
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	443, 656
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	339, 501, 592
VpaK11BI	GGWCC	1 cut(s)	51
XbaI	TCTAGA	1 cut(s)	544
XceI	RCATGY	1 cut(s)	164
XspI	CTAG	5 cut(s)	102, 404, 545, 663, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.