pycom15g23440
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000261
Physical Location & Seq
Reverse (-)
17531635 .. 17532506
872 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23440.2

Sequence Viewer

Length: 639 bp
ATGGCTCAGTTTGAAACAGCTATTAATTTGAAATGTCCTAATTCCAATATAAAGGCAGTTCCACATATTGAGTCCAAAATGAGGAGGTGGAAAAAAGATTATGCAATAGTTTATGACATGGTTAATAAAACTAGTTTTGCATGGAATGATGTACGAAAGTGTATTGAGGTTGATAGCACTGAAGTATGGCAATCCTATGTAAAGGTTAACAAAGAAGCAGAAGGCTGGCTAGGAAAATCGTTTCTATTGTATGACAGATTGAATGTTATTTTTGGGAAAGACCGAGCAACCGGAATAATAGCTACAACTCCTACTGAGATGATGAATGAGCCTGAGCACATTAATGAAGATGAAGATGAAGATGAGGCGGAGACTAGTTCTCCCTCTGTTGCTCGACGGTCCAGTAGTTCAAGTACCCAGAAAAGGAAGAGAGCTACTAATGATAATGATCTTGATCTGGCATTTAAAGAAATGCTTTCTGAATCAGTTGATAAGTTGGGTGAAGTTTTACTAGTTGCTTTTGGGAAAGGAGTGGATCCAAAACTTGAGATTGTTTCAGAATTGTCAAAGATGGATTTGTCTATTGAGGATCGATCAAATCAAGGCACTAAATATCCTTTTCAAAAAGCCACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

213

Amino Acids

24.1

Weight (kDa)

5.12

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 368
AclWI GGATC 3 cut(s) 530, 543, 597
AcuI CTGAAG 1 cut(s) 201
AfaI GTAC 2 cut(s) 153, 415
AfiI CCNNNNNNNGG 2 cut(s) 81, 423
AgsI TTSAA 5 cut(s) 14, 31, 262, 411, 623
AhlI ACTAGT 3 cut(s) 131, 374, 511
AluBI AGCT 3 cut(s) 20, 302, 434
AluI AGCT 3 cut(s) 20, 302, 434
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 3 cut(s) 530, 543, 597
AseI ATTAAT 2 cut(s) 24, 342
AspS9I GGNCC 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 512
AvaII GGWCC 1 cut(s) 399
BamHI GGATCC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 339
BccI CCATC 1 cut(s) 565
BcoDI GTCTC 1 cut(s) 365
BcuI ACTAGT 3 cut(s) 131, 374, 511
BfaI CTAG 4 cut(s) 132, 230, 375, 512
Bme18I GGWCC 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 399
BmiI GGNNCC 1 cut(s) 537
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 566
Bsa29I ATCGAT 1 cut(s) 592
BsaBI GATNNNNATC 2 cut(s) 447, 453
BsaWI WCCGGW 1 cut(s) 290
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 423
Bse1I ACTGG 1 cut(s) 402
Bse8I GATNNNNATC 2 cut(s) 447, 453
BseCI ATCGAT 1 cut(s) 592
BseJI GATNNNNATC 2 cut(s) 447, 453
BseLI CCNNNNNNNGG 2 cut(s) 81, 423
BseMII CTCAG 3 cut(s) 20, 306, 324
BseNI ACTGG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 97
BshVI ATCGAT 1 cut(s) 592
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 81, 423
BsmAI GTCTC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 5 cut(s) 448, 454, 535, 589, 593
BspACI CCGC 1 cut(s) 368
BspCNI CTCAG 3 cut(s) 19, 307, 325
BspDI ATCGAT 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 537
BspPI GGATC 3 cut(s) 530, 543, 597
BsrI ACTGG 1 cut(s) 402
BssMI GATC 5 cut(s) 448, 454, 535, 589, 593
Bst4CI ACNGT 1 cut(s) 399
Bst6I CTCTTC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 3 cut(s) 6, 315, 333
BstKTI GATC 5 cut(s) 451, 457, 538, 592, 596
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 5 cut(s) 448, 454, 535, 589, 593
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
Bsu15I ATCGAT 1 cut(s) 592
BsuTUI ATCGAT 1 cut(s) 592
BtsIMutI CAGTG 2 cut(s) 177, 630
Cac8I GCNNGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 399
ClaI ATCGAT 1 cut(s) 592
Csp6I GTAC 2 cut(s) 152, 414
CviAII CATG 2 cut(s) 118, 141
CviJI RGCY 8 cut(s) 5, 20, 225, 229, 302, 331, 434, 629
CviKI_1 RGCY 8 cut(s) 5, 20, 225, 229, 302, 331, 434, 629
CviQI GTAC 2 cut(s) 152, 414
DdeI CTNAG 3 cut(s) 6, 315, 333
DpnI GATC 5 cut(s) 450, 456, 537, 591, 595
DpnII GATC 5 cut(s) 448, 454, 535, 589, 593
DraI TTTAAA 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EciI GGCGGA 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 399
Eco57I CTGAAG 1 cut(s) 201
FaeI CATG 2 cut(s) 121, 144
FaiI YATR 9 cut(s) 50, 66, 102, 114, 119, 142, 187, 198, 252
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FatI CATG 2 cut(s) 117, 140
FspBI CTAG 4 cut(s) 132, 230, 375, 512
HapII CCGG 1 cut(s) 291
Hin1II CATG 2 cut(s) 121, 144
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HinfI GANTC 2 cut(s) 71, 482
HpaI GTTAAC 1 cut(s) 208
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 481, 559
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 1 cut(s) 399
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 2 cut(s) 104, 140
HpyF3I CTNAG 3 cut(s) 6, 315, 333
Hsp92II CATG 2 cut(s) 121, 144
KspAI GTTAAC 1 cut(s) 208
Kzo9I GATC 5 cut(s) 448, 454, 535, 589, 593
LpnPI CCDG 6 cut(s) 211, 304, 345, 415, 431, 443
MaeI CTAG 4 cut(s) 132, 230, 375, 512
MalI GATC 5 cut(s) 450, 456, 537, 591, 595
MboI GATC 5 cut(s) 448, 454, 535, 589, 593
MboII GAAGA 4 cut(s) 359, 365, 371, 439
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 3 cut(s) 25, 40, 560
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 6 cut(s) 75, 78, 160, 358, 394, 580
MseI TTAA 5 cut(s) 24, 123, 207, 342, 465
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 1 cut(s) 291
NdeII GATC 5 cut(s) 448, 454, 535, 589, 593
NlaIII CATG 2 cut(s) 121, 144
NlaIV GGNNCC 1 cut(s) 537
PfeI GAWTC 1 cut(s) 482
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PshBI ATTAAT 2 cut(s) 24, 342
PspN4I GGNNCC 1 cut(s) 537
PspPI GGNCC 1 cut(s) 399
PsuI RGATCY 1 cut(s) 535
RsaI GTAC 2 cut(s) 153, 415
RsaNI GTAC 2 cut(s) 152, 414
RseI CAYNNNNRTG 1 cut(s) 342
SaqAI TTAA 5 cut(s) 24, 123, 207, 342, 465
Sau3AI GATC 5 cut(s) 448, 454, 535, 589, 593
Sau96I GGNCC 1 cut(s) 399
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 339
SetI ASST 6 cut(s) 22, 89, 171, 207, 304, 436
SinI GGWCC 1 cut(s) 399
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SpeI ACTAGT 3 cut(s) 131, 374, 511
Sse9I AATT 3 cut(s) 25, 40, 560
SsiI CCGC 1 cut(s) 368
SspMI CTAG 4 cut(s) 132, 230, 375, 512
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 394, 592
TaqII GACCGA 1 cut(s) 297
TasI AATT 3 cut(s) 25, 40, 560
TfiI GAWTC 1 cut(s) 482
Tru1I TTAA 5 cut(s) 24, 123, 207, 342, 465
Tru9I TTAA 5 cut(s) 24, 123, 207, 342, 465
TscAI CASTG 2 cut(s) 184, 637
TspDTI ATGAA 4 cut(s) 338, 360, 366, 372
TspRI CASTG 2 cut(s) 184, 637
VpaK11BI GGWCC 1 cut(s) 399
VspI ATTAAT 2 cut(s) 24, 342
XspI CTAG 4 cut(s) 132, 230, 375, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.