pycom10g15700
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000261
Physical Location & Seq
Forward (+)
18905522 .. 18906352
831 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15700.2

Sequence Viewer

Length: 711 bp
ATGGCTTATTTGATGGATTATATGGCCGCCTCACATAATTGGAATGATCATGACGAGGATGTATTGCTTACCATCCTCGAGGAGATGGTAGTTGATGGTGTTAGGTGTGAGACCAGCAGTTTTAAGGCTGGTACATTTGTAATGGTTGCCATGAAGATGAGGGAGATGATTCCGGGCATTAATATAGAGCCAAAGCATATACAAAACAAGCTGAAGCGTCTAAAAGAAAAGTATTCCTCTGCATATGACATGATGAATACCTCTGGATTTGGTTGGGATGACGAAAAAAAATGTAAACATCCTAATGCATCTTACAAACCAAATAAGCCATTTCTGTTGTATCCACGCTTGTGTACGGTGTTTGGGAGAGACCGAGCCACGGGTAGTATGGCTGAATCAGCAGCATATGCAATCGAAAACATGGTATTGGAAAATGAGGATGGCGATGAGACATTCGAGATGCCTCTGACTTCACCTACCCCATCTCTTTCTGTTGGTACATCTAGTGCATCTCAACCTATTAGGAAGAGGAAGAGGAATAAGAATGATGCTGATGCAAATATTGTAGTTGTTATCCATGAAGGTTGGGATAAAGCAATTATTGAAATGAAGAATTTAGGTGAAAGTTTTACTTTGAGAGAAGCAAAAGTCAGGTTACTTTCTCAGCTTCAGGCCATGGGTTTCCCATATGATCAGGTCCTGAGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

237

Amino Acids

26.79

Weight (kDa)

6.0

Isoelectric Point (pI)

54.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 77
AciI CCGC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 2 cut(s) 613, 705
AcuI CTGAAG 2 cut(s) 233, 653
AfaI GTAC 3 cut(s) 133, 355, 499
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 1 cut(s) 605
AleI CACNNNNGTG 1 cut(s) 349
AluBI AGCT 2 cut(s) 211, 667
AluI AGCT 2 cut(s) 211, 667
Alw26I GTCTC 3 cut(s) 104, 363, 443
AlwNI CAGNNNCTG 1 cut(s) 700
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 2 cut(s) 24, 672
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 2 cut(s) 613, 705
AseI ATTAAT 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 697
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 465, 632
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 1 cut(s) 697
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BbvI GCAGC 1 cut(s) 413
BccI CCATC 6 cut(s) 7, 79, 80, 89, 434, 490
BciVI GTATCC 1 cut(s) 351
BclI TGATCA 2 cut(s) 46, 691
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 3 cut(s) 104, 363, 443
BfaI CTAG 1 cut(s) 504
BfuI GTATCC 1 cut(s) 351
BisI GCNGC 2 cut(s) 27, 402
BlsI GCNGC 2 cut(s) 28, 403
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 1 cut(s) 697
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 697
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 5 cut(s) 317, 450, 518, 538, 544
BpuMI CCSGG 1 cut(s) 174
BsaI GGTCTC 2 cut(s) 104, 363
BsaJI CCNNGG 2 cut(s) 378, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 379
BseDI CCNNGG 2 cut(s) 378, 675
BseGI GGATG 5 cut(s) 64, 72, 283, 298, 445
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 677, 692
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 413
BshFI GGCC 2 cut(s) 26, 674
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 3 cut(s) 104, 363, 443
BsnI GGCC 2 cut(s) 26, 674
Bso31I GGTCTC 2 cut(s) 104, 363
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 2 cut(s) 46, 691
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 26, 674
BspCNI CTCAG 2 cut(s) 676, 693
BspHI TCATGA 1 cut(s) 49
BspTNI GGTCTC 2 cut(s) 104, 363
BssECI CCNNGG 2 cut(s) 378, 675
BssMI GATC 2 cut(s) 46, 691
BssT1I CCWWGG 1 cut(s) 675
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 2 cut(s) 521, 527
BstAPI GCANNNNNTGC 1 cut(s) 407
BstDEI CTNAG 2 cut(s) 663, 701
BstDSI CCRYGG 2 cut(s) 378, 675
BstF5I GGATG 5 cut(s) 64, 72, 283, 298, 445
BstKTI GATC 2 cut(s) 49, 694
BstMAI GTCTC 3 cut(s) 104, 363, 443
BstMBI GATC 2 cut(s) 46, 691
BstMWI GCNNNNNNNGC 2 cut(s) 398, 407
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 413
BsuI GTATCC 1 cut(s) 351
BsuRI GGCC 2 cut(s) 26, 674
BtgI CCRYGG 2 cut(s) 378, 675
BtgZI GCGATG 1 cut(s) 459
BtsCI GGATG 5 cut(s) 64, 72, 283, 298, 445
CaiI CAGNNNCTG 1 cut(s) 700
CciI TCATGA 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 697
CseI GACGC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 132, 354, 498
CviAII CATG 6 cut(s) 50, 151, 250, 421, 578, 676
CviQI GTAC 3 cut(s) 132, 354, 498
DdeI CTNAG 2 cut(s) 663, 701
DpnI GATC 2 cut(s) 48, 693
DpnII GATC 2 cut(s) 46, 691
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 521, 527
EarI CTCTTC 2 cut(s) 521, 527
Eco130I CCWWGG 1 cut(s) 675
Eco31I GGTCTC 2 cut(s) 104, 363
Eco47I GGWCC 1 cut(s) 697
Eco57I CTGAAG 2 cut(s) 233, 653
Eco88I CYCGRG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 675
EcoT22I ATGCAT 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 6 cut(s) 53, 154, 253, 424, 581, 679
FalI AAGNNNNNCTT 2 cut(s) 616, 648
FatI CATG 6 cut(s) 49, 150, 249, 420, 577, 675
FauNDI CATATG 3 cut(s) 244, 406, 688
FbaI TGATCA 2 cut(s) 46, 691
Fnu4HI GCNGC 2 cut(s) 27, 402
FokI GGATG 5 cut(s) 59, 71, 285, 290, 452
Fsp4HI GCNGC 2 cut(s) 27, 402
FspBI CTAG 1 cut(s) 504
GluI GCNGC 2 cut(s) 27, 402
HaeIII GGCC 2 cut(s) 26, 674
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 206
Hin1II CATG 6 cut(s) 53, 154, 253, 424, 581, 679
HinfI GANTC 2 cut(s) 169, 395
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 465, 632
Hpy166II GTNNAC 2 cut(s) 296, 354
Hpy188I TCNGA 1 cut(s) 468
Hpy188III TCNNGA 4 cut(s) 50, 264, 457, 700
Hpy8I GTNNAC 2 cut(s) 296, 354
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4V TGCA 5 cut(s) 242, 308, 410, 509, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 407
HpyF3I CTNAG 2 cut(s) 663, 701
Hsp92II CATG 6 cut(s) 53, 154, 253, 424, 581, 679
Ksp22I TGATCA 2 cut(s) 46, 691
Kzo9I GATC 2 cut(s) 46, 691
LpnPI CCDG 7 cut(s) 114, 127, 186, 249, 637, 656, 680
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 5 cut(s) 317, 450, 518, 538, 544
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 654
MalI GATC 2 cut(s) 48, 693
MboI GATC 2 cut(s) 46, 691
MboII GAAGA 4 cut(s) 166, 538, 544, 622
MluCI AATT 4 cut(s) 37, 597, 613, 705
Mph1103I ATGCAT 1 cut(s) 310
MseI TTAA 3 cut(s) 123, 180, 709
MslI CAYNNNNRTG 3 cut(s) 155, 303, 349
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 398, 407
NciI CCSGG 1 cut(s) 174
NcoI CCATGG 1 cut(s) 675
NdeI CATATG 3 cut(s) 244, 406, 688
NdeII GATC 2 cut(s) 46, 691
NlaIII CATG 6 cut(s) 53, 154, 253, 424, 581, 679
NsiI ATGCAT 1 cut(s) 310
OliI CACNNNNGTG 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 49
PfeI GAWTC 2 cut(s) 169, 395
PkrI GCNGC 2 cut(s) 28, 403
PpuMI RGGWCCY 1 cut(s) 697
PshBI ATTAAT 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 697
PspPI GGNCC 1 cut(s) 697
PspPPI RGGWCCY 1 cut(s) 697
PspXI VCTCGAGB 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 700
RsaI GTAC 3 cut(s) 133, 355, 499
RsaNI GTAC 3 cut(s) 132, 354, 498
RseI CAYNNNNRTG 3 cut(s) 155, 303, 349
SaqAI TTAA 3 cut(s) 123, 180, 709
SatI GCNGC 2 cut(s) 27, 402
Sau3AI GATC 2 cut(s) 46, 691
Sau96I GGNCC 1 cut(s) 697
ScrFI CCNGG 1 cut(s) 174
SfaNI GCATC 5 cut(s) 317, 450, 518, 538, 544
Sfr274I CTCGAG 1 cut(s) 77
SinI GGWCC 1 cut(s) 697
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 3 cut(s) 155, 303, 349
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 4 cut(s) 37, 597, 613, 705
SsiI CCGC 1 cut(s) 27
SspI AATATT 1 cut(s) 562
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 1 cut(s) 358
TaqI TCGA 3 cut(s) 78, 414, 456
TaqII GACCGA 1 cut(s) 387
TasI AATT 4 cut(s) 37, 597, 613, 705
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 2 cut(s) 169, 395
Tru1I TTAA 3 cut(s) 123, 180, 709
Tru9I TTAA 3 cut(s) 123, 180, 709
TseI GCWGC 1 cut(s) 401
TspDTI ATGAA 4 cut(s) 167, 269, 594, 623
VpaK11BI GGWCC 1 cut(s) 697
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 2 cut(s) 613, 705
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XhoI CTCGAG 1 cut(s) 77
XspI CTAG 1 cut(s) 504
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.