pycom16g26310
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000261
Physical Location & Seq
Reverse (-)
28743559 .. 28744245
687 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g26310.1

Sequence Viewer

Length: 609 bp
ATGGCTTCTTTGATAGATTATATGGCCACCTCACGTAATTGGAATGTTCATGATGAGGATGTACTGCTTACCATCCTCGAGGAGATGGTAGTTGATGGTGTTAGGTGTGAGATTGTCAGTTTTAAGGCTGGTACATTTGTAATGGTTGCCACCAAGATGAGGGAGATGATTCCGGGCATTAATATAGAGCCAAAACATATACAAAACAAGCTGAAGTGTCTAAAAGAAAAGTATTCCTTTGCATATGACATGATGAATACCTCTGGATTTGGTTGGGATGATGAAAAAAAATATGTTGTTGTGGATAGTGACGATGTACTTCAGCTGTGGGTGAAGAAACATCCTAATGCATCTTACAAAACAAATATGCCATTTCTGTTGTATCGACGCTTATGTACGGTGTTTGGGAGGGATCGAGCCACGGGTAATATGGCTGAATCAACAGCAGATGCAATTGAAAACATGGATTGGAAAATGAAGATAGCGATGAGACATTCGAGATGCCTTCGACTTCACCAACCCCATCTCCTTCTATTGGTACATCCAGTGCATCTCAACTTATTAGGAAGAGGAAAAGGAATAAGAATGATGTTGATGCAAATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

203

Amino Acids

23.42

Weight (kDa)

8.84

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 12 - 91 2.3e-06 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 13 - 103 3.3e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 77
AclWI GGATC 1 cut(s) 420
AcoI YGGCCR 1 cut(s) 24
AcuI CTGAAG 2 cut(s) 233, 305
AfaI GTAC 5 cut(s) 63, 133, 318, 397, 540
AfiI CCNNNNNNNGG 2 cut(s) 159, 535
AgsI TTSAA 1 cut(s) 458
AluBI AGCT 2 cut(s) 211, 325
AluI AGCT 2 cut(s) 211, 325
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 1 cut(s) 420
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 24
AseI ATTAAT 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 343, 506
AvaI CYCGRG 1 cut(s) 77
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BalI TGGCCA 1 cut(s) 26
BccI CCATC 4 cut(s) 79, 80, 89, 531
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 484
Bme1390I CCNGG 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 5 cut(s) 359, 439, 491, 559, 585
BpuMI CCSGG 1 cut(s) 174
BsaAI YACGTR 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 535
Bse1I ACTGG 1 cut(s) 545
BseDI CCNNGG 1 cut(s) 420
BseGI GGATG 5 cut(s) 64, 72, 283, 340, 541
BseLI CCNNNNNNNGG 2 cut(s) 159, 535
BseNI ACTGG 1 cut(s) 545
BseRI GAGGAG 1 cut(s) 95
BshFI GGCC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 159, 535
BsmAI GTCTC 1 cut(s) 484
BsnI GGCC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 1 cut(s) 412
BspANI GGCC 1 cut(s) 26
BspHI TCATGA 1 cut(s) 49
BspPI GGATC 1 cut(s) 420
BsrI ACTGG 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 1 cut(s) 412
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 562
BstBAI YACGTR 1 cut(s) 35
BstDSI CCRYGG 1 cut(s) 420
BstF5I GGATG 5 cut(s) 64, 72, 283, 340, 541
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 1 cut(s) 412
BstSCI CCNGG 1 cut(s) 172
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 420
BtgZI GCGATG 1 cut(s) 500
BtsCI GGATG 5 cut(s) 64, 72, 283, 340, 541
BtsIMutI CAGTG 1 cut(s) 552
CciI TCATGA 1 cut(s) 49
CseI GACGC 1 cut(s) 396
Csp6I GTAC 5 cut(s) 62, 132, 317, 396, 539
CviAII CATG 3 cut(s) 50, 250, 463
CviJI RGCY 8 cut(s) 5, 26, 128, 190, 211, 325, 419, 434
CviKI_1 RGCY 8 cut(s) 5, 26, 128, 190, 211, 325, 419, 434
CviQI GTAC 5 cut(s) 62, 132, 317, 396, 539
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 562
Eco57I CTGAAG 2 cut(s) 233, 305
Eco88I CYCGRG 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 352
FaeI CATG 3 cut(s) 53, 253, 466
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 3 cut(s) 49, 249, 462
FauNDI CATATG 1 cut(s) 244
FokI GGATG 5 cut(s) 59, 71, 290, 327, 528
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 396
Hin1II CATG 3 cut(s) 53, 253, 466
HinfI GANTC 2 cut(s) 169, 437
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 343, 506
Hpy188III TCNNGA 3 cut(s) 50, 264, 498
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 2 cut(s) 515, 539
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 5 cut(s) 242, 350, 452, 550, 598
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 3 cut(s) 53, 253, 466
Kzo9I GATC 1 cut(s) 412
LpnPI CCDG 4 cut(s) 114, 186, 249, 558
LweI GCATC 5 cut(s) 359, 439, 491, 559, 585
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 3 cut(s) 346, 490, 579
MfeI CAATTG 1 cut(s) 453
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 2 cut(s) 37, 453
MluNI TGGCCA 1 cut(s) 26
MnlI CCTC 8 cut(s) 40, 49, 73, 86, 153, 271, 402, 563
Mox20I TGGCCA 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 352
MscI TGGCCA 1 cut(s) 26
MseI TTAA 2 cut(s) 123, 180
MslI CAYNNNNRTG 2 cut(s) 155, 345
Msp20I TGGCCA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 174
MunI CAATTG 1 cut(s) 453
NciI CCSGG 1 cut(s) 174
NdeI CATATG 1 cut(s) 244
NdeII GATC 1 cut(s) 412
NlaIII CATG 3 cut(s) 53, 253, 466
NmuCI GTSAC 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 49
PfeI GAWTC 2 cut(s) 169, 437
Ppu21I YACGTR 1 cut(s) 35
PshBI ATTAAT 1 cut(s) 180
PspXI VCTCGAGB 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 325
RsaI GTAC 5 cut(s) 63, 133, 318, 397, 540
RsaNI GTAC 5 cut(s) 62, 132, 317, 396, 539
RseI CAYNNNNRTG 2 cut(s) 155, 345
SaqAI TTAA 2 cut(s) 123, 180
Sau3AI GATC 1 cut(s) 412
ScrFI CCNGG 1 cut(s) 174
SetI ASST 6 cut(s) 32, 37, 107, 213, 263, 327
SfaNI GCATC 5 cut(s) 359, 439, 491, 559, 585
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 155, 345
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 37, 453
SspI AATATT 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 1 cut(s) 37
TaqI TCGA 5 cut(s) 78, 385, 415, 497, 508
TasI AATT 2 cut(s) 37, 453
TatI WGTACW 2 cut(s) 61, 316
TfiI GAWTC 2 cut(s) 169, 437
Tru1I TTAA 2 cut(s) 123, 180
Tru9I TTAA 2 cut(s) 123, 180
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 38, 269, 297, 491
TspRI CASTG 1 cut(s) 552
VspI ATTAAT 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XhoI CTCGAG 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.