Rmu_sc0001718.1_g000001
MYB Family

nuclease HARBI1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001718.1
OG0000261
Physical Location & Seq
Reverse (-)
981 .. 7648
6668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001718.1_g000001.1.cds

Sequence Viewer

Length: 972 bp
atgatggaggagcagagcaacaatgaagatggcattgaagttgagaatgacacaagcccaatgtcaatgagcacaggacaatctcatgttagtcagaaaaagaggaaaagaaatgatgaagataaaattatgattgcattggataaattgtttgaagaatctggaaaaagaatgcaagcagtgactgatgctatagtgaaaggtaatgaagatcgatctgatattgccaaggaacttaagaaaatgggactttctgttatagaccaaattgaggcattgaaaatcattttggataagccccaaaatatctctgtgttcatgtccttagatgatgaagtgcgaaaagtgatgacggtcgactcctctcttcctctcctatacgcctgtggtcgtgatttggccggagaagctcgaattcaaaccaagaagattactgtagcagtttgttatttcaggcgatatcttccgattccggccgtctccggccaccaaactggcgtcgaaggtttttgggtagtccattttaggggtgactctgccgaatttttggtaaagatatccctaaggtgggccccacatggccacctcggatttcaaggtgaaattcggggcgggtcctgtcaattttcctatgcttctttctgcttcttcaagcttttcttcttcaagctttcatggtatcaagagccaggtttgatctgtgaccttggagcacctaaatcaaagcaccctaaccctaatacgacggcctctcgtcaatctgctgtcatctcttgcttcaagatggccacctcctcctccattgatgatgtcacagcttgctttgcagcatcgctggctctgccagggaacgatgtcattgatatctcacgcttgggaggcgctgctccactaaactctcaggccttcttactagcgtggccactgacggtgaaaccctttgcggcaatagatctgcaccggcatttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

323

Amino Acids

35.8

Weight (kDa)

6.71

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 357
AciI CCGC 2 cut(s) 612, 944
AcoI YGGCCR 6 cut(s) 399, 474, 484, 580, 786, 920
AcsI RAATTY 3 cut(s) 414, 542, 603
AcyI GRCGYC 1 cut(s) 498
AfiI CCNNNNNNNGG 4 cut(s) 271, 526, 567, 568
AflII CTTAAG 1 cut(s) 236
AgsI TTSAA 8 cut(s) 38, 155, 280, 419, 596, 652, 667, 781
AjnI CCWGG 2 cut(s) 688, 844
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 4 cut(s) 410, 655, 670, 818
AluI AGCT 4 cut(s) 410, 655, 670, 818
Alw21I GWGCWC 2 cut(s) 74, 715
Alw26I GTCTC 1 cut(s) 484
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 9 cut(s) 399, 474, 484, 570, 580, 747, 786, 903, 920
ApaI GGGCCC 1 cut(s) 574
ApeKI GCWGC 2 cut(s) 827, 884
ApoI RAATTY 3 cut(s) 414, 542, 603
AspLEI GCGC 1 cut(s) 884
AspS9I GGNCC 3 cut(s) 570, 571, 615
AsuHPI GGTGA 3 cut(s) 542, 611, 943
AvaII GGWCC 1 cut(s) 615
AxyI CCTNAGG 1 cut(s) 563
BaeGI GKGCMC 1 cut(s) 574
BalI TGGCCA 3 cut(s) 582, 788, 922
BanII GRGCYC 1 cut(s) 574
Bbv12I GWGCWC 2 cut(s) 74, 715
BbvI GCAGC 2 cut(s) 839, 871
BccI CCATC 2 cut(s) 23, 778
BceAI ACGGC 2 cut(s) 461, 762
BciT130I CCWGG 2 cut(s) 690, 846
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 1 cut(s) 914
BfmI CTRYAG 2 cut(s) 192, 435
BfoI RGCGCY 1 cut(s) 885
BfrI CTTAAG 1 cut(s) 236
BglII AGATCT 1 cut(s) 952
BisI GCNGC 3 cut(s) 828, 885, 945
BlsI GCNGC 3 cut(s) 829, 886, 946
Bme1390I CCNGG 2 cut(s) 690, 846
Bme18I GGWCC 1 cut(s) 615
BmgT120I GGNCC 3 cut(s) 570, 571, 615
BmiI GGNNCC 3 cut(s) 572, 573, 616
BmrFI CCNGG 2 cut(s) 690, 846
BmsI GCATC 2 cut(s) 178, 839
Bsa29I ATCGAT 1 cut(s) 214
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 4 cut(s) 228, 586, 706, 845
Bsc4I CCNNNNNNNGG 4 cut(s) 271, 526, 567, 568
Bse118I RCCGGY 1 cut(s) 960
Bse1I ACTGG 1 cut(s) 499
Bse21I CCTNAGG 1 cut(s) 563
BseBI CCWGG 2 cut(s) 690, 846
BseCI ATCGAT 1 cut(s) 214
BseDI CCNNGG 4 cut(s) 228, 586, 706, 845
BseLI CCNNNNNNNGG 4 cut(s) 271, 526, 567, 568
BseMII CTCAG 1 cut(s) 914
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 4 cut(s) 23, 352, 784, 787
BseSI GKGCMC 1 cut(s) 574
BseX3I CGGCCG 1 cut(s) 474
BseXI GCAGC 2 cut(s) 839, 871
BsgI GTGCAG 1 cut(s) 941
Bsh1285I CGRYCG 2 cut(s) 357, 477
BshFI GGCC 9 cut(s) 401, 476, 486, 572, 582, 749, 788, 905, 922
BshVI ATCGAT 1 cut(s) 214
BsiEI CGRYCG 2 cut(s) 357, 477
BsiHKAI GWGCWC 2 cut(s) 74, 715
BsiSI CCGG 4 cut(s) 402, 473, 483, 961
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 4 cut(s) 271, 526, 567, 568
BsmAI GTCTC 1 cut(s) 484
BsmBI CGTCTC 1 cut(s) 484
BsmFI GGGAC 1 cut(s) 261
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 9 cut(s) 401, 476, 486, 572, 582, 749, 788, 905, 922
Bsp120I GGGCCC 1 cut(s) 570
Bsp1286I GDGCHC 3 cut(s) 74, 574, 715
Bsp143I GATC 4 cut(s) 211, 215, 696, 952
BspACI CCGC 2 cut(s) 612, 944
BspANI GGCC 9 cut(s) 401, 476, 486, 572, 582, 749, 788, 905, 922
BspCNI CTCAG 1 cut(s) 913
BspDI ATCGAT 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 572, 573, 616
BspTI CTTAAG 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 960
BsrI ACTGG 1 cut(s) 499
BssAI RCCGGY 1 cut(s) 960
BssECI CCNNGG 4 cut(s) 228, 586, 706, 845
BssMI GATC 4 cut(s) 211, 215, 696, 952
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 2 cut(s) 228, 706
Bst2UI CCWGG 2 cut(s) 690, 846
Bst4CI ACNGT 3 cut(s) 355, 436, 931
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 498
BstAFI CTTAAG 1 cut(s) 236
BstC8I GCNNGC 3 cut(s) 177, 820, 837
BstDEI CTNAG 3 cut(s) 325, 563, 900
BstH2I RGCGCY 1 cut(s) 885
BstHHI GCGC 1 cut(s) 884
BstKTI GATC 4 cut(s) 214, 218, 699, 955
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 4 cut(s) 211, 215, 696, 952
BstMCI CGRYCG 2 cut(s) 357, 477
BstMWI GCNNNNNNNGC 5 cut(s) 407, 824, 836, 841, 879
BstNI CCWGG 2 cut(s) 690, 846
BstSCI CCNGG 2 cut(s) 688, 844
BstSFI CTRYAG 2 cut(s) 192, 435
BstSLI GKGCMC 1 cut(s) 574
BstV1I GCAGC 2 cut(s) 839, 871
BstX2I RGATCY 1 cut(s) 952
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 1 cut(s) 952
BstZI CGGCCG 1 cut(s) 474
Bsu15I ATCGAT 1 cut(s) 214
Bsu36I CCTNAGG 1 cut(s) 563
BsuRI GGCC 9 cut(s) 401, 476, 486, 572, 582, 749, 788, 905, 922
BsuTUI ATCGAT 1 cut(s) 214
BtgZI GCGATG 1 cut(s) 816
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 186, 923
Cac8I GCNNGC 3 cut(s) 177, 820, 837
CaiI CAGNNNCTG 1 cut(s) 185
CfoI GCGC 1 cut(s) 884
Cfr10I RCCGGY 1 cut(s) 960
Cfr13I GGNCC 3 cut(s) 570, 571, 615
ClaI ATCGAT 1 cut(s) 214
CseI GACGC 1 cut(s) 487
CviAII CATG 4 cut(s) 86, 319, 578, 675
DdeI CTNAG 3 cut(s) 325, 563, 900
DpnI GATC 4 cut(s) 213, 217, 698, 954
DpnII GATC 4 cut(s) 211, 215, 696, 952
EaeI YGGCCR 6 cut(s) 399, 474, 484, 580, 786, 920
EagI CGGCCG 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EclXI CGGCCG 1 cut(s) 474
Eco130I CCWWGG 2 cut(s) 228, 706
Eco147I AGGCCT 1 cut(s) 905
Eco24I GRGCYC 1 cut(s) 574
Eco32I GATATC 3 cut(s) 461, 558, 865
Eco47I GGWCC 1 cut(s) 615
Eco52I CGGCCG 1 cut(s) 474
Eco81I CCTNAGG 1 cut(s) 563
EcoO109I RGGNCCY 2 cut(s) 571, 615
EcoRI GAATTC 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 688, 844
EcoRV GATATC 3 cut(s) 461, 558, 865
EcoT14I CCWWGG 2 cut(s) 228, 706
EcoT38I GRGCYC 1 cut(s) 574
ErhI CCWWGG 2 cut(s) 228, 706
Esp3I CGTCTC 1 cut(s) 484
FaeI CATG 4 cut(s) 89, 322, 581, 678
FaiI YATR 9 cut(s) 87, 131, 194, 260, 320, 379, 579, 633, 676
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FaqI GGGAC 1 cut(s) 261
FatI CATG 4 cut(s) 85, 318, 577, 674
FauI CCCGC 1 cut(s) 605
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 828, 885, 945
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 3 cut(s) 828, 885, 945
FspBI CTAG 1 cut(s) 914
GlaI GCGC 1 cut(s) 883
GluI GCNGC 3 cut(s) 828, 885, 945
HaeII RGCGCY 1 cut(s) 885
HaeIII GGCC 9 cut(s) 401, 476, 486, 572, 582, 749, 788, 905, 922
HapII CCGG 4 cut(s) 402, 473, 483, 961
HgaI GACGC 1 cut(s) 487
HhaI GCGC 1 cut(s) 884
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 4 cut(s) 89, 322, 581, 678
Hin6I GCGC 1 cut(s) 882
HinP1I GCGC 1 cut(s) 882
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 2 cut(s) 653, 668
HinfI GANTC 4 cut(s) 158, 359, 469, 533
HpaII CCGG 4 cut(s) 402, 473, 483, 961
HphI GGTGA 3 cut(s) 542, 611, 943
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 4 cut(s) 96, 220, 468, 590
Hpy188III TCNNGA 4 cut(s) 162, 392, 683, 781
Hpy8I GTNNAC 1 cut(s) 358
Hpy99I CGWCG 2 cut(s) 503, 748
HpyAV CCTTC 2 cut(s) 497, 916
HpyCH4III ACNGT 3 cut(s) 355, 436, 931
HpyCH4V TGCA 4 cut(s) 137, 175, 827, 958
HpyF10VI GCNNNNNNNGC 5 cut(s) 407, 824, 836, 841, 879
HpyF3I CTNAG 3 cut(s) 325, 563, 900
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 4 cut(s) 89, 322, 581, 678
HspAI GCGC 1 cut(s) 882
Kzo9I GATC 4 cut(s) 211, 215, 696, 952
LmnI GCTCC 3 cut(s) 10, 710, 892
Lsp1109I GCAGC 2 cut(s) 839, 871
LweI GCATC 2 cut(s) 178, 839
MaeI CTAG 1 cut(s) 914
MaeIII GTNAC 4 cut(s) 181, 530, 701, 811
MalI GATC 4 cut(s) 213, 217, 698, 954
MboI GATC 4 cut(s) 211, 215, 696, 952
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 3 cut(s) 74, 574, 715
MlsI TGGCCA 3 cut(s) 582, 788, 922
MluCI AATT 7 cut(s) 126, 146, 267, 414, 542, 603, 623
MluNI TGGCCA 3 cut(s) 582, 788, 922
MlyI GAGTC 2 cut(s) 353, 527
Mox20I TGGCCA 3 cut(s) 582, 788, 922
MscI TGGCCA 3 cut(s) 582, 788, 922
MseI TTAA 1 cut(s) 237
Msp20I TGGCCA 3 cut(s) 582, 788, 922
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 4 cut(s) 402, 473, 483, 961
MspR9I CCNGG 2 cut(s) 690, 846
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 2 cut(s) 690, 846
MwoI GCNNNNNNNGC 5 cut(s) 407, 824, 836, 841, 879
NdeII GATC 4 cut(s) 211, 215, 696, 952
NlaIII CATG 4 cut(s) 89, 322, 581, 678
NlaIV GGNNCC 3 cut(s) 572, 573, 616
NmuCI GTSAC 4 cut(s) 181, 530, 701, 811
PceI AGGCCT 1 cut(s) 905
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 158, 469
PkrI GCNGC 3 cut(s) 829, 886, 946
PleI GAGTC 2 cut(s) 353, 527
PpsI GAGTC 2 cut(s) 353, 527
PpuMI RGGWCCY 1 cut(s) 615
Psp5II RGGWCCY 1 cut(s) 615
Psp6I CCWGG 2 cut(s) 688, 844
PspGI CCWGG 2 cut(s) 688, 844
PspN4I GGNNCC 3 cut(s) 572, 573, 616
PspOMI GGGCCC 1 cut(s) 570
PspPI GGNCC 3 cut(s) 570, 571, 615
PspPPI RGGWCCY 1 cut(s) 615
PstNI CAGNNNCTG 1 cut(s) 185
PsuI RGATCY 1 cut(s) 952
SalI GTCGAC 1 cut(s) 356
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 3 cut(s) 828, 885, 945
Sau3AI GATC 4 cut(s) 211, 215, 696, 952
Sau96I GGNCC 3 cut(s) 570, 571, 615
SchI GAGTC 2 cut(s) 353, 527
ScrFI CCNGG 2 cut(s) 690, 846
SduI GDGCHC 3 cut(s) 74, 574, 715
SfaNI GCATC 2 cut(s) 178, 839
SfcI CTRYAG 2 cut(s) 192, 435
SinI GGWCC 1 cut(s) 615
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 7 cut(s) 126, 146, 267, 414, 542, 603, 623
SseBI AGGCCT 1 cut(s) 905
SsiI CCGC 2 cut(s) 612, 944
SspMI CTAG 1 cut(s) 914
StuI AGGCCT 1 cut(s) 905
StyD4I CCNGG 2 cut(s) 688, 844
StyI CCWWGG 2 cut(s) 228, 706
TaaI ACNGT 3 cut(s) 355, 436, 931
TaqI TCGA 4 cut(s) 214, 357, 412, 501
TasI AATT 7 cut(s) 126, 146, 267, 414, 542, 603, 623
TauI GCSGC 1 cut(s) 947
TfiI GAWTC 2 cut(s) 158, 469
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 186, 930
TseFI GTSAC 4 cut(s) 181, 530, 701, 811
TseI GCWGC 2 cut(s) 827, 884
Tsp45I GTSAC 4 cut(s) 181, 530, 701, 811
TspDTI ATGAA 6 cut(s) 39, 132, 222, 307, 348, 663
TspRI CASTG 2 cut(s) 186, 930
Vha464I CTTAAG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 615
XapI RAATTY 3 cut(s) 414, 542, 603
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.