pycom10g10480
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000261
Physical Location & Seq
Reverse (-)
13786666 .. 13787391
726 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g10480.1

Sequence Viewer

Length: 648 bp
ATGGCTTCTTTGATAGATTATATGGCCACCTCACGTAATTGGATTGATCATGAGGAAGATGTACTACTTACCATCCTCGAGGAGATGGTTGTTGATGGTGTTAGGTGTGAGACCGGCAATTTTAAGGCTGGTACTTTTGTAACGGTTGCCTCCAAGATGAGGGAACAGATTCATGGCATTAATATAGAGCCGAAGCATATACAAAACAAATTGAAGCGTCTGAAAGAAAAGTATTCGTCTGCATATGACATGATGAATACATCTGGATTTGGTTGGGATGATGAGAAAAAATGTGTTGTTGTGGATAGTGACGAAATACTACAGGAGTGGGTGAAGAAACATCCCAATGCATCTTGCAAACCAAATAAGCCATTCCCGTTGTATCCACGGCTATGTACGGTGTTTGGGAGAGACCGAGCCATGAGTAGCATTGCTGAATCAGCAGCAGATGCAATTGAAAATATGGGTTTGGAAAGTGAGGATTGTGAGACTTCTGAGATGCCTCGCTTTCACCTACCCCATCTCCTTCTGTTGCTACATCTAGTGCTTCTCAACCTGTTAGGAAGAGGAAGAGGAGCAGGAATGATGGTGATGCAAATATTGTATCTGTTATCAGTGAAGGTTGGAATAAAGCTGTTACTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

216

Amino Acids

24.35

Weight (kDa)

6.17

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 12 - 92 7.5e-09 Myb/SANT-like DNA-binding domain
Myb_DNA-bind_3 PF12776 14 - 102 2.8e-11 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 24
AfaI GTAC 3 cut(s) 63, 133, 397
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 2 cut(s) 214, 458
AluBI AGCT 1 cut(s) 634
AluI AGCT 1 cut(s) 634
Alw26I GTCTC 3 cut(s) 104, 405, 482
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 443
AseI ATTAAT 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 343, 503, 601
AvaI CYCGRG 1 cut(s) 77
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BalI TGGCCA 1 cut(s) 26
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbvI GCAGC 1 cut(s) 455
BccI CCATC 5 cut(s) 79, 80, 89, 528, 580
BceAI ACGGC 1 cut(s) 404
BciVI GTATCC 1 cut(s) 393
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 3 cut(s) 104, 405, 482
BfaI CTAG 1 cut(s) 542
BfmI CTRYAG 1 cut(s) 320
BfuI GTATCC 1 cut(s) 393
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 77
BmsI GCATC 4 cut(s) 359, 439, 489, 582
BsaAI YACGTR 1 cut(s) 35
BsaI GGTCTC 2 cut(s) 104, 405
BsaJI CCNNGG 1 cut(s) 386
BsaXI ACNNNNNCTCC 2 cut(s) 507, 537
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse118I RCCGGY 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 386
BseGI GGATG 3 cut(s) 72, 283, 340
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 1 cut(s) 486
BseRI GAGGAG 2 cut(s) 95, 588
BseXI GCAGC 1 cut(s) 455
BshFI GGCC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 3 cut(s) 104, 405, 482
BsnI GGCC 1 cut(s) 26
Bso31I GGTCTC 2 cut(s) 104, 405
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 1 cut(s) 46
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 487
BspHI TCATGA 1 cut(s) 49
BspTNI GGTCTC 2 cut(s) 104, 405
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 386
BssMI GATC 1 cut(s) 46
Bst4CI ACNGT 2 cut(s) 145, 400
Bst6I CTCTTC 2 cut(s) 559, 565
BstAPI GCANNNNNTGC 1 cut(s) 449
BstBAI YACGTR 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 495
BstDSI CCRYGG 1 cut(s) 386
BstF5I GGATG 3 cut(s) 72, 283, 340
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 3 cut(s) 104, 405, 482
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 440, 449
BstSFI CTRYAG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 455
BsuI GTATCC 1 cut(s) 393
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 386
BtsCI GGATG 3 cut(s) 72, 283, 340
BtsIMutI CAGTG 1 cut(s) 621
CciI TCATGA 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 113
CseI GACGC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 62, 132, 396
CviAII CATG 4 cut(s) 50, 173, 250, 421
CviJI RGCY 8 cut(s) 5, 26, 128, 190, 370, 391, 419, 634
CviKI_1 RGCY 8 cut(s) 5, 26, 128, 190, 370, 391, 419, 634
CviQI GTAC 3 cut(s) 62, 132, 396
DdeI CTNAG 1 cut(s) 495
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 559, 565
EarI CTCTTC 2 cut(s) 559, 565
Eco31I GGTCTC 2 cut(s) 104, 405
Eco88I CYCGRG 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 352
FaeI CATG 4 cut(s) 53, 176, 253, 424
FatI CATG 4 cut(s) 49, 172, 249, 420
FauNDI CATATG 1 cut(s) 244
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 3 cut(s) 59, 290, 327
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 1 cut(s) 542
GluI GCNGC 1 cut(s) 444
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 114
HgaI GACGC 1 cut(s) 206
Hin1II CATG 4 cut(s) 53, 176, 253, 424
HinfI GANTC 2 cut(s) 169, 437
HpaII CCGG 1 cut(s) 114
HphI GGTGA 3 cut(s) 343, 503, 601
Hpy188I TCNGA 2 cut(s) 222, 496
Hpy188III TCNNGA 2 cut(s) 50, 264
HpyAV CCTTC 2 cut(s) 536, 613
HpyCH4III ACNGT 2 cut(s) 145, 400
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 5 cut(s) 242, 350, 357, 452, 595
HpyF10VI GCNNNNNNNGC 2 cut(s) 440, 449
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 4 cut(s) 53, 176, 253, 424
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 575
LpnPI CCDG 6 cut(s) 114, 127, 249, 308, 564, 569
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 4 cut(s) 359, 439, 489, 582
MaeI CTAG 1 cut(s) 542
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 3 cut(s) 139, 308, 636
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 4 cut(s) 68, 346, 576, 582
MfeI CAATTG 1 cut(s) 453
MlsI TGGCCA 1 cut(s) 26
MluCI AATT 4 cut(s) 37, 118, 209, 453
MluNI TGGCCA 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 604
Mox20I TGGCCA 1 cut(s) 26
Mph1103I ATGCAT 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 168
MscI TGGCCA 1 cut(s) 26
MseI TTAA 2 cut(s) 123, 180
MslI CAYNNNNRTG 2 cut(s) 345, 391
Msp20I TGGCCA 1 cut(s) 26
MspI CCGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 453
MwoI GCNNNNNNNGC 2 cut(s) 440, 449
NdeI CATATG 1 cut(s) 244
NdeII GATC 1 cut(s) 46
NlaIII CATG 4 cut(s) 53, 176, 253, 424
NmuCI GTSAC 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 352
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 169, 437
PkrI GCNGC 1 cut(s) 445
Ppu21I YACGTR 1 cut(s) 35
PshBI ATTAAT 1 cut(s) 180
PspXI VCTCGAGB 1 cut(s) 77
RsaI GTAC 3 cut(s) 63, 133, 397
RsaNI GTAC 3 cut(s) 62, 132, 396
RseI CAYNNNNRTG 2 cut(s) 345, 391
SaqAI TTAA 2 cut(s) 123, 180
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 1 cut(s) 46
SetI ASST 7 cut(s) 32, 37, 107, 516, 558, 624, 636
SfaNI GCATC 4 cut(s) 359, 439, 489, 582
SfcI CTRYAG 1 cut(s) 320
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 2 cut(s) 345, 391
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 4 cut(s) 37, 118, 209, 453
SspI AATATT 1 cut(s) 600
SspMI CTAG 1 cut(s) 542
TaaI ACNGT 2 cut(s) 145, 400
TaiI ACGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 78
TaqII GACCGA 1 cut(s) 429
TasI AATT 4 cut(s) 37, 118, 209, 453
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 2 cut(s) 169, 437
Tru1I TTAA 2 cut(s) 123, 180
Tru9I TTAA 2 cut(s) 123, 180
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 161, 269
TspRI CASTG 1 cut(s) 621
VspI ATTAAT 1 cut(s) 180
XhoI CTCGAG 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 542
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.