FvH4_4g15171
MYB Family

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000261
Physical Location & Seq
Reverse (-)
18759685 .. 18761276
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15171.t1

Sequence Viewer

Length: 681 bp
ATGGAAAATGTTGATATGATTGACTCTATTGAAGCATCAGATCAGACGGCATGGAGGAATGAGAAAGCCTCTCAAATGTTTGATGATTGGACAAGACGCATGAATGGTAGAGGTGGTCCTAGAGGCCAGAGTTTCAAATCTGGAACTTTGCTTCAAATAGAAAAGTCTTTAGAGCTCTTGTGCCCTAACTCCAATCTCAAGGCATATCCACACATTGAATCAAAATTGATGAAATGGAAACAAAATTTTAGTATTGTGTATGACATGACAAACACAAGTGGTTTTGCATGGAGTGATGCCAAGAAGTGCATTGAAGTTGATAGCAACGATGCATGGGATATGTATGTTCAGGATCGTGCCAATGGAAGAGGAGCTGAAACCCCTGCTGATATGGCGGATGACCAAAGCAATAATGATATCAATCCTGAGAATGTTGTTAATGATAAAGTATTTGAAGAATCAGGAAAGAGAATGCAAATGGTAACTGAGGCCATATTGAAGGGTAATGAAGATCGCTCTGACATTGCCAAAGAATTGAAGAACATGGGATTATCTGTTGATGATCAAATTGCTGCATTAGGAATCATCCTAGAGAGACCACAGAACATCTCTATCTTCAAGTCATTGGATGATGATGTTAAAGCGGTATATGTTCAGAACTTGCTTATGGGCAATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

227

Amino Acids

25.54

Weight (kDa)

4.68

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 395, 644
AclWI GGATC 1 cut(s) 360
AcsI RAATTY 1 cut(s) 244
AgsI TTSAA 9 cut(s) 32, 136, 155, 218, 314, 455, 499, 538, 619
AluBI AGCT 2 cut(s) 175, 374
AluI AGCT 2 cut(s) 175, 374
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 589
AlwI GGATC 1 cut(s) 360
AoxI GGCC 2 cut(s) 124, 489
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 559
BceAI ACGGC 1 cut(s) 63
BclI TGATCA 1 cut(s) 562
BcoDI GTCTC 1 cut(s) 589
BfaI CTAG 2 cut(s) 120, 590
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmsI GCATC 3 cut(s) 44, 286, 319
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpuEI CTTGAG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 420
BsaI GGTCTC 1 cut(s) 589
Bse3DI GCAATG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 420
BseGI GGATG 3 cut(s) 403, 585, 634
BseJI GATNNNNATC 1 cut(s) 420
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 2 cut(s) 417, 477
BseRI GAGGAG 1 cut(s) 384
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 1 cut(s) 559
BshFI GGCC 2 cut(s) 126, 491
BsiHKAI GWGCWC 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 589
BsmI GAATGC 1 cut(s) 477
BsnI GGCC 2 cut(s) 126, 491
Bso31I GGTCTC 1 cut(s) 589
Bsp1286I GDGCHC 2 cut(s) 177, 185
Bsp143I GATC 4 cut(s) 40, 352, 511, 562
BspACI CCGC 2 cut(s) 395, 644
BspANI GGCC 2 cut(s) 126, 491
BspCNI CTCAG 2 cut(s) 418, 478
BspPI GGATC 1 cut(s) 360
BspTNI GGTCTC 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 522
BssMI GATC 4 cut(s) 40, 352, 511, 562
Bst6I CTCTTC 1 cut(s) 361
BstDEI CTNAG 2 cut(s) 426, 486
BstF5I GGATG 3 cut(s) 403, 585, 634
BstKTI GATC 4 cut(s) 43, 355, 514, 565
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 4 cut(s) 40, 352, 511, 562
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 559
BsuRI GGCC 2 cut(s) 126, 491
BtsCI GGATG 3 cut(s) 403, 585, 634
Cfr13I GGNCC 1 cut(s) 116
CseI GACGC 1 cut(s) 105
CviAII CATG 6 cut(s) 51, 100, 265, 288, 333, 544
CviJI RGCY 5 cut(s) 68, 126, 175, 374, 491
CviKI_1 RGCY 5 cut(s) 68, 126, 175, 374, 491
DdeI CTNAG 2 cut(s) 426, 486
DpnI GATC 4 cut(s) 42, 354, 513, 564
DpnII GATC 4 cut(s) 40, 352, 511, 562
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
EciI GGCGGA 1 cut(s) 410
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco31I GGTCTC 1 cut(s) 589
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoRV GATATC 1 cut(s) 418
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 6 cut(s) 54, 103, 268, 291, 336, 547
FatI CATG 6 cut(s) 50, 99, 264, 287, 332, 543
FbaI TGATCA 1 cut(s) 562
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 3 cut(s) 410, 572, 641
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 2 cut(s) 120, 590
GluI GCNGC 1 cut(s) 573
HaeIII GGCC 2 cut(s) 126, 491
HgaI GACGC 1 cut(s) 105
Hin1II CATG 6 cut(s) 54, 103, 268, 291, 336, 547
HinfI GANTC 4 cut(s) 23, 218, 458, 582
Hpy188I TCNGA 4 cut(s) 40, 45, 520, 657
Hpy188III TCNNGA 4 cut(s) 141, 350, 425, 462
HpyAV CCTTC 1 cut(s) 493
HpyCH4V TGCA 5 cut(s) 287, 309, 332, 475, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
HpyF3I CTNAG 2 cut(s) 426, 486
Hsp92II CATG 6 cut(s) 54, 103, 268, 291, 336, 547
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 4 cut(s) 40, 352, 511, 562
LmnI GCTCC 1 cut(s) 371
LpnPI CCDG 6 cut(s) 126, 140, 335, 396, 438, 447
Lsp1109I GCAGC 1 cut(s) 559
LweI GCATC 3 cut(s) 44, 286, 319
MaeI CTAG 2 cut(s) 120, 590
MaeIII GTNAC 1 cut(s) 481
MalI GATC 4 cut(s) 42, 354, 513, 564
MboI GATC 4 cut(s) 40, 352, 511, 562
MboII GAAGA 5 cut(s) 378, 467, 521, 550, 607
MhlI GDGCHC 2 cut(s) 177, 185
MluCI AATT 4 cut(s) 224, 244, 533, 567
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 6 cut(s) 48, 79, 104, 116, 362, 481
Mph1103I ATGCAT 1 cut(s) 334
MseI TTAA 2 cut(s) 438, 639
Mva1269I GAATGC 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 392
NdeII GATC 4 cut(s) 40, 352, 511, 562
NlaIII CATG 6 cut(s) 54, 103, 268, 291, 336, 547
NsiI ATGCAT 1 cut(s) 334
PctI GAATGC 1 cut(s) 477
PfeI GAWTC 3 cut(s) 218, 458, 582
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 116
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 438, 639
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 4 cut(s) 40, 352, 511, 562
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 17
SduI GDGCHC 2 cut(s) 177, 185
SetI ASST 3 cut(s) 115, 177, 376
SfaNI GCATC 3 cut(s) 44, 286, 319
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 4 cut(s) 224, 244, 533, 567
SsiI CCGC 2 cut(s) 395, 644
SspMI CTAG 2 cut(s) 120, 590
SstI GAGCTC 1 cut(s) 177
TasI AATT 4 cut(s) 224, 244, 533, 567
TfiI GAWTC 3 cut(s) 218, 458, 582
Tru1I TTAA 2 cut(s) 438, 639
Tru9I TTAA 2 cut(s) 438, 639
TseI GCWGC 1 cut(s) 572
TspDTI ATGAA 3 cut(s) 116, 245, 522
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 244
XspI CTAG 2 cut(s) 120, 590
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.