pycom16g11100
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000261
Physical Location & Seq
Forward (+)
7686153 .. 7686798
646 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g11100.3

Sequence Viewer

Length: 498 bp
ATGGCTTCTTTGATAGATTATATGGTAACCTCACGTAATTGGATTGATCATGAGGAGGATGTACTACTTACCATCCTCGAGGAGATGGTTGTTGATGGTGTTAGGTGTGAGACTGGCAGTTTTAAGGCTGGTACTTTTGTAATGGTTGCCTCCAAGATAAGGGAACAGATTCCTGGCATTAATATAGAGCCGAAACATATACAAAACAAATTGAAAAAAAAATGTGTTGTTATGGATAGTGATGAAATACTACAAAAGTGGGTGAAGAAACATCCCAATGCATCTTGCAAACCAAATAAGCCATTCCCGTTGTATCCACGGTGTTTGGGAGAGACCGAGCCATGGGGAGTATGGCTGAATCAGCAGCGGATGCAATCGAAAATATGGGTTTGGAAAGTTAGGATTTTGAGACTTCCGAGATGCCTCCATCTTCACCTACCCCATCTCCTTCTATTGCTACATATAGTGCATCTCAACCTGTTAGGAAGAGGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

166

Amino Acids

19.27

Weight (kDa)

9.42

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000261)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18411 FvH4_1g22560 FvH4_1g24290 FvH4_1g24290 FvH4_1g24290 FvH4_1g29434 FvH4_2g04031 FvH4_2g04811 FvH4_2g07610 FvH4_2g09412 FvH4_3g15552 FvH4_3g30720 FvH4_4g05810 FvH4_4g09541 FvH4_4g15171 FvH4_6g09145 FvH4_6g49541 FvH4_7g00320 FvH4_7g11552
malus_domestica MD00G1072400.v1.1 MD01G1188100.v1.1 MD07G1132000.v1.1 MD08G1190700.v1.1 MD10G1011200.v1.1 MD14G1164100.v1.1 MD15G1289200.v1.1 MD15G1289300.v1.1 MD17G1245100.v1.1
prunus_persica Prupe.6G228600_v2.0.a1
pyrus_communis pycom01g07070 pycom02g06890 pycom02g06900 pycom02g13930 pycom04g07470 pycom04g11770 pycom04g21930 pycom05g08520 pycom06g04490 pycom06g09560 pycom07g03750 pycom08g08760 pycom08g13660 pycom09g11520 pycom09g14250 pycom09g14770 pycom10g00720 pycom10g01290 pycom10g10480 pycom10g15700 pycom12420g00130 pycom12g05380 pycom12g08750 pycom13g19010 pycom13g29080 pycom14g06210 pycom14g13680 pycom14g19850 pycom15g22070 pycom15g23440 pycom15g24950 pycom15g25280 pycom16g11100 pycom16g17080 pycom16g26310 pycom17g15650 pycom17g15670 pycom17g20370
rosa_chinensis RchiOBHm_Chr1g0373591 RchiOBHm_Chr2g0105551 RchiOBHm_Chr2g0106711 RchiOBHm_Chr2g0106721 RchiOBHm_Chr7g0219611
rosa_laevigata RLG00000013773 RLG00000017436 RLG00000017533
rosa_multiflora Rmu_co8001842.1_g000001 Rmu_co8158450.1_g000001 Rmu_sc0000516.1_g000067 Rmu_sc0000566.1_g000009 Rmu_sc0000965.1_g000025 Rmu_sc0001718.1_g000001 Rmu_sc0001719.1_g000020 Rmu_sc0001822.1_g000025 Rmu_sc0002219.1_g000003 Rmu_sc0002460.1_g000059 Rmu_sc0002757.1_g000001 Rmu_sc0002860.1_g000001 Rmu_sc0004531.1_g000001 Rmu_sc0005558.1_g000003 Rmu_sc0011218.1_g000001 Rmu_sc0011998.1_g000003 Rmu_sc0015560.1_g000002 Rmu_sc0015560.1_g000003
rosa_roxburghii Rroxscaffold_1G00004200 Rroxscaffold_1G00026570 Rroxscaffold_1G00040370 Rroxscaffold_1G00044120 Rroxscaffold_1G00049590 Rroxscaffold_1G00059030 Rroxscaffold_2G00108440 Rroxscaffold_2G00108850 Rroxscaffold_2G00130680 Rroxscaffold_2G00132980 Rroxscaffold_2G00136860 Rroxscaffold_3G00218610 Rroxscaffold_4G00309940 Rroxscaffold_6G00405560
rosa_rugosa Rorug02G0138000 Rorug02G0138100 Rorug02G0138100 Rorug06G0154000
rosa_samantha Rh1AG121500 Rh1CG116300 Rh2AG189000 Rh2AG509600 Rh2BG200200 Rh2CG194100 Rh2DG195300 Rh5AG114400 Rh5DG488800
rosa_wichuraiana Rw0G022020 Rw1G023650 Rw1G026380 Rw1G034750 Rw1G040770 Rw2G014870 Rw2G016560 Rw4G031190 Rw5G026570 Rw6G003020 Rw6G012060 Rw7G014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 77
AciI CCGC 1 cut(s) 367
AfaI GTAC 2 cut(s) 63, 133
AfiI CCNNNNNNNGG 2 cut(s) 159, 342
AgsI TTSAA 1 cut(s) 214
AjnI CCWGG 1 cut(s) 172
Alw26I GTCTC 3 cut(s) 104, 326, 403
Ama87I CYCGRG 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 364
AseI ATTAAT 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 274, 425
AvaI CYCGRG 1 cut(s) 77
BaeI ACNNNNGTAYC 2 cut(s) 123, 156
BbvI GCAGC 1 cut(s) 376
BccI CCATC 5 cut(s) 79, 80, 89, 435, 450
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 324
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 3 cut(s) 104, 326, 403
BfuI GTATCC 1 cut(s) 324
BisI GCNGC 1 cut(s) 365
BlsI GCNGC 1 cut(s) 366
Bme1390I CCNGG 1 cut(s) 174
BmeT110I CYCGRG 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 4 cut(s) 290, 360, 410, 478
BsaAI YACGTR 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 317, 341
BsaXI ACNNNNNCTCC 2 cut(s) 429, 459
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 342
Bse1I ACTGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 2 cut(s) 317, 341
BseGI GGATG 4 cut(s) 64, 72, 271, 375
BseLI CCNNNNNNNGG 2 cut(s) 159, 342
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 2 cut(s) 68, 95
BseXI GCAGC 1 cut(s) 376
BsiHKCI CYCGRG 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 159, 342
BsmAI GTCTC 3 cut(s) 104, 326, 403
Bso31I GGTCTC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 77
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 341
BspACI CCGC 1 cut(s) 367
BspHI TCATGA 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 326
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 317, 341
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 481
BstAPI GCANNNNNTGC 1 cut(s) 370
BstBAI YACGTR 1 cut(s) 35
BstDSI CCRYGG 2 cut(s) 317, 341
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 4 cut(s) 64, 72, 271, 375
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 3 cut(s) 104, 326, 403
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 361, 370
BstNI CCWGG 1 cut(s) 174
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 376
BsuI GTATCC 1 cut(s) 324
BtgI CCRYGG 2 cut(s) 317, 341
BtsCI GGATG 4 cut(s) 64, 72, 271, 375
CciI TCATGA 1 cut(s) 49
Csp6I GTAC 2 cut(s) 62, 132
CspCI CAANNNNNGTGG 2 cut(s) 306, 341
CviAII CATG 2 cut(s) 50, 342
CviJI RGCY 6 cut(s) 5, 128, 190, 301, 340, 355
CviKI_1 RGCY 6 cut(s) 5, 128, 190, 301, 340, 355
CviQI GTAC 2 cut(s) 62, 132
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 341
EcoT22I ATGCAT 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 341
FaeI CATG 2 cut(s) 53, 345
FatI CATG 2 cut(s) 49, 341
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 365
FokI GGATG 4 cut(s) 59, 71, 258, 382
Fsp4HI GCNGC 1 cut(s) 365
GluI GCNGC 1 cut(s) 365
Hin1II CATG 2 cut(s) 53, 345
HinfI GANTC 2 cut(s) 169, 358
HphI GGTGA 2 cut(s) 274, 425
Hpy188I TCNGA 1 cut(s) 417
Hpy188III TCNNGA 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 1 cut(s) 321
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 281, 288, 373, 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 370
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 2 cut(s) 53, 345
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 5 cut(s) 99, 114, 159, 186, 491
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 4 cut(s) 290, 360, 410, 478
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 277, 422, 498
MluCI AATT 2 cut(s) 37, 209
MnlI CCTC 8 cut(s) 40, 46, 49, 73, 86, 160, 434, 482
Mph1103I ATGCAT 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 2 cut(s) 123, 180
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 367
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 361, 370
NcoI CCATGG 1 cut(s) 341
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 53, 345
NsiI ATGCAT 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 2 cut(s) 169, 358
PkrI GCNGC 1 cut(s) 366
Ppu21I YACGTR 1 cut(s) 35
PshBI ATTAAT 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 172
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 1 cut(s) 172
PspXI VCTCGAGB 1 cut(s) 77
RsaI GTAC 2 cut(s) 63, 133
RsaNI GTAC 2 cut(s) 62, 132
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 2 cut(s) 123, 180
SatI GCNGC 1 cut(s) 365
Sau3AI GATC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 174
SetI ASST 5 cut(s) 32, 37, 107, 438, 480
SfaNI GCATC 4 cut(s) 290, 360, 410, 478
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 2 cut(s) 37, 209
SsiI CCGC 1 cut(s) 367
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 341
TaaI ACNGT 1 cut(s) 321
TaiI ACGT 1 cut(s) 37
TaqI TCGA 2 cut(s) 78, 377
TaqII GACCGA 1 cut(s) 350
TasI AATT 2 cut(s) 37, 209
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 2 cut(s) 169, 358
Tru1I TTAA 2 cut(s) 123, 180
Tru9I TTAA 2 cut(s) 123, 180
TseI GCWGC 1 cut(s) 364
TspDTI ATGAA 1 cut(s) 258
VspI ATTAAT 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 348
XhoI CTCGAG 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.